mRNA_M-pyrifera_M_contig74029.17533.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74029.17533.1
Unique NamemRNA_M-pyrifera_M_contig74029.17533.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Match: D8LK66_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK66_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.870e-51
Identity = 79/102 (77.45%), Postives = 93/102 (91.18%), Query Frame = 1
Query:    1 WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVPPLPFAVTTMVFTFVALLGWREVYTAFNPTGEGDKQAGIMDGFRMITTLLQRW 306
            WLA+SPLLGAYT++AT T G AAK+L+PAWG+SIP  IFLRALSKGGEVPP+PFAVT+M+FT  AL+ WR++YTA NPTGEGDKQAG++DGFRMITTLLQRW
Sbjct:  261 WLAVSPLLGAYTRSATETPGGAAKALLPAWGISIPVGIFLRALSKGGEVPPVPFAVTSMIFTLAALMAWRQLYTAVNPTGEGDKQAGLLDGFRMITTLLQRW 362          
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Match: A0A835ZDH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDH1_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.720e-29
Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVPPLPFAVTTMVFTFVALLGWREVYTAFNPTGEGD-KQAGIMDGFRMITTLLQRW 306
            WL LSPLLGAYT  ATAT  D   +LVPAW VSIP A+ +R   KG +VPP+PF + +++ T   L  WR +Y   NPT   + K+ GI+DGFRMITTLL+RW
Sbjct:  171 WLGLSPLLGAYTNQATATQKDMISTLVPAWAVSIPVALAIRGAVKG-DVPPVPFIIVSLIATGSLLAAWRGLYVVINPTSTAETKRGGILDGFRMITTLLRRW 272          
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Match: A0A7S2UZN6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN6_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.810e-27
Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVPPLPFAVTTMVFTFVALLGWREVYTAFNPTGEGDKQ---AGIMDGFRMITTLLQRW 306
            WL L+PL GAYT+ A    G +AKS+  AW  SIP  IF RAL+KGGE+PP  F   +M  T V LL WR ++   N  G  DK+    GI+DGFRMITTL++RW
Sbjct:  179 WLLLAPLAGAYTRQAVTDQGSSAKSVAVAWVASIPAGIFARALTKGGEIPPTSFIAVSMTATLVLLLTWRAIFVKVN--GSPDKEFRDGGIIDGFRMITTLIKRW 281          
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Match: R7QL50_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL50_CHOCR)

HSP 1 Score: 92.8 bits (229), Expect = 7.000e-20
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = 1
Query:    1 WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVPPLPFAVTTMVFTFVALLGWREVYTAF--NPTGEGDKQAGIMDGFRMITTLLQRW 306
            WLA SPLLGAYT+ ATA      K+   +W +++P  I LR +     VPP  FAV T+V TF  + GWR +YT    + T E  ++ GI+DGF M++TLL+RW
Sbjct:  405 WLATSPLLGAYTRAATANVAATVKTFAKSWAIAVPMGIGLRGVLTD-HVPPAVFAVVTLVSTFAIVGGWRVLYTKIRGDETDEA-RRGGILDGFNMVSTLLRRW 506          
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Match: A0A1X6P744_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P744_PORUM)

HSP 1 Score: 82.4 bits (202), Expect = 3.000e-16
Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    1 WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVPPLPFAVTTMVFTFVALLGWREVYTAFN--PTGEGDKQAGIMDGFRMITTLLQRW 306
            WLA++PL+GAYT+ A  T   AA +   AW V +P  + LR +     +PP  FAV T++ T V L  WR  Y         EG K+ G++DGFRMITTLL+RW
Sbjct:  337 WLAVAPLMGAYTRRAVGTYQGAAVTTARAWLVGVPSGLALRGVVTS-HLPPPSFAVVTLLSTAVLLGVWRGSYVKLRGAEVAEG-KRGGVLDGFRMITTLLRRW 438          
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Match: A0A2V3IEJ3_9FLOR (Adenylate kinase, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEJ3_9FLOR)

HSP 1 Score: 80.9 bits (198), Expect = 1.130e-15
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVPPLPFAVTTMVFTFVALLGWREVYTAFN-PTGEGDKQAGIMDGFRMITTLLQRW 306
            WL  SPLLGAYT+ ATA      K  V AW V++P  I LR +     VPP+ FAV ++V T + +  WR +Y        +  ++ G+++ F+M+TTLL+RW
Sbjct:  368 WLISSPLLGAYTRAATANIPATLKYFVRAWAVAVPMGIGLRGVVTD-HVPPVVFAVISLVATLLLMGSWRTLYVLIRGDETDSARRGGVVETFKMVTTLLRRW 469          
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Match: A0A5J4YRR5_PORPP (Adenylate kinase 8 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRR5_PORPP)

HSP 1 Score: 67.4 bits (163), Expect = 6.720e-11
Identity = 37/103 (35.92%), Postives = 57/103 (55.34%), Query Frame = 1
Query:    1 WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVPPLPFAVTTMVFTFVALLGWREVYTAFNPTGEG--DKQAGIMDGFRMITTLLQR 303
            W+  SP+LGAYT  AT++       +  +  V++P  + +R L     VPP  FA   M+   + L  WR  Y +   T +   +K+ G++DGF+MITTLL+R
Sbjct:  643 WVLGSPVLGAYTAAATSSQSAVLACVARSALVALPLGLAIRGLETS-HVPPPSFAGIAMITNLILLSAWRSAYISVAGTSDPGPEKRGGLLDGFKMITTLLRR 744          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74029.17533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LK66_ECTSI1.870e-5177.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZDH1_9STRA1.720e-2955.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2UZN6_9STRA9.810e-2752.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R7QL50_CHOCR7.000e-2046.15Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6P744_PORUM3.000e-1645.19Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A2V3IEJ3_9FLOR1.130e-1540.78Adenylate kinase, chloroplastic n=1 Tax=Gracilario... [more]
A0A5J4YRR5_PORPP6.720e-1135.92Adenylate kinase 8 n=1 Tax=Porphyridium purpureum ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74029contigM-pyrifera_M_contig74029:645..953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue8.9e-42
Seed eggNOG ortholog2880.D8LK66
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Protein of unknown function (DUF3054)
EggNOG OGs2CM8N@1,2QPMJ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.2731926-CDS-M-pyrifera_M_contig74029:644..9531622816638.2731926-CDS-M-pyrifera_M_contig74029:644..953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74029 645..953 -
1692278092.0341783-CDS-M-pyrifera_M_contig74029:644..9531692278092.0341783-CDS-M-pyrifera_M_contig74029:644..953Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74029 645..953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74029.17533.1prot_M-pyrifera_M_contig74029.17533.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74029 645..953 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74029.17533.1

>prot_M-pyrifera_M_contig74029.17533.1 ID=prot_M-pyrifera_M_contig74029.17533.1|Name=mRNA_M-pyrifera_M_contig74029.17533.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
WLALSPLLGAYTKTATATAGDAAKSLVPAWGVSIPFAIFLRALSKGGEVP
PLPFAVTTMVFTFVALLGWREVYTAFNPTGEGDKQAGIMDGFRMITTLLQ
RW*
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mRNA from alignment at M-pyrifera_M_contig74029:645..953-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74029.17533.1 ID=mRNA_M-pyrifera_M_contig74029.17533.1|Name=mRNA_M-pyrifera_M_contig74029.17533.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=309bp|location=Sequence derived from alignment at M-pyrifera_M_contig74029:645..953- (Macrocystis pyrifera P11B4 male)
TGGTTGGCGCTCTCCCCGCTCCTGGGAGCGTACACGAAGACAGCCACGGC AACCGCGGGGGATGCGGCCAAGTCGCTGGTCCCGGCGTGGGGGGTTTCCA TTCCGTTCGCCATTTTTTTGCGCGCTCTGTCGAAGGGGGGAGAGGTGCCT CCCCTCCCCTTTGCGGTCACCACGATGGTGTTCACGTTCGTCGCGCTGTT GGGGTGGAGGGAGGTGTACACAGCGTTCAACCCAACCGGGGAGGGGGACA AACAGGCGGGGATCATGGACGGGTTCCGAATGATCACGACGCTTCTGCAG CGGTGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74029:645..953-

>mRNA_M-pyrifera_M_contig74029.17533.1 ID=mRNA_M-pyrifera_M_contig74029.17533.1|Name=mRNA_M-pyrifera_M_contig74029.17533.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig74029:645..953- (Macrocystis pyrifera P11B4 male)
TGGTTGGCGCTCTCCCCGCTCCTGGGAGCGTACACGAAGACAGCCACGGC
AACCGCGGGGGATGCGGCCAAGTCGCTGGTCCCGGCGTGGGGGGTTTCCA
TTCCGTTCGCCATTTTTTTGCGCGCTCTGTCGAAGGGGGGAGAGGTGCCT
CCCCTCCCCTTTGCGGTCACCACGATGGTGTTCACGTTCGTCGCGCTGTT
GGGGTGGAGGGAGGTGTACACAGCGTTCAACCCAACCGGGGAGGGGGACA
AACAGGCGGGGATCATGGACGGGTTCCGAATGATCACGACGCTTCTGCAG
CGGTGGTAGTGGTTGGCGCTCTCCCCGCTCCTGGGAGCGTACACGAAGAC
AGCCACGGCAACCGCGGGGGATGCGGCCAAGTCGCTGGTCCCGGCGTGGG
GGGTTTCCATTCCGTTCGCCATTTTTTTGCGCGCTCTGTCGAAGGGGGGA
GAGGTGCCTCCCCTCCCCTTTGCGGTCACCACGATGGTGTTCACGTTCGT
CGCGCTGTTGGGGTGGAGGGAGGTGTACACAGCGTTCAACCCAACCGGGG
AGGGGGACAAACAGGCGGGGATCATGGACGGGTTCCGAATGATCACGACG
CTTCTGCAGCGGTGGTAG
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