mRNA_M-pyrifera_M_contig74019.17532.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig74019.17532.1
Unique NamemRNA_M-pyrifera_M_contig74019.17532.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig74019.17532.1 vs. uniprot
Match: A0A517PG51_9PLAN (Uncharacterized protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517PG51_9PLAN)

HSP 1 Score: 730 bits (1884), Expect = 1.040e-259
Identity = 358/360 (99.44%), Postives = 359/360 (99.72%), Query Frame = 1 
Query:    1 INGKANLNQLRFHLGSEKKGGWPTYQDIQALEREAFYKVRGQIVDGRIEEERTSIVLIVRHLEKIEPRPIMFADLVDRNTTFTGTAAENGTFVTEQGQAKLQGLEQWPQAVQGQQVFVRGTLRQQPNGFQIEQAIWHPADLELLVDKPVALEGTLWDENHPSFMKYEKEFLYLSFPPSRRAMFLQKYQHRRVPVRVSGTLVRESRPPLNWNGPDLEAPFQACYVIRDARVEYLLPADFEYDEYKAIYSRHPVSQGVPELVAEYPFPGNRQEDPSDAQDFVWRNEATIQSILTGTTLRTRNVLTERMQDPQQPAELRKIYAAMLAHLNDQRGRDYLLKSLEDRSPDAFDDTVFCLGMFPSL 1080
            INGKANLNQ+RFHLGSEKKGGWPTYQDIQALEREAFYKVRGQIVDGRIEEERTSIVLIVRHLEKIEPRPIMFADLVDRNTTFTGTAAENGTFVTEQGQAKLQGLEQWPQAVQGQQVFVRGTLRQQPNGFQIEQAIWHPADLELLVDKPVALEGTLWDENHPSFMKYEKEFLYLSFPPSRRAMFLQKYQHRRVPVRVSGTLVRESRPPLNWNGPDLEAPFQACYVIRDARVEYLLPADFEYDEYKAIYSRHPVSQGVPELVAEYPFPGNRQEDPSDAQDFVWRNEATIQSILTGTTLRTRNVLTERMQDPQQPAELRKIYAAMLAHLNDQRGRDYLLKSLEDRSPDAFDDTVFCLG FPSL
Sbjct:   77 INGKANLNQVRFHLGSEKKGGWPTYQDIQALEREAFYKVRGQIVDGRIEEERTSIVLIVRHLEKIEPRPIMFADLVDRNTTFTGTAAENGTFVTEQGQAKLQGLEQWPQAVQGQQVFVRGTLRQQPNGFQIEQAIWHPADLELLVDKPVALEGTLWDENHPSFMKYEKEFLYLSFPPSRRAMFLQKYQHRRVPVRVSGTLVRESRPPLNWNGPDLEAPFQACYVIRDARVEYLLPADFEYDEYKAIYSRHPVSQGVPELVAEYPFPGNRQEDPSDAQDFVWRNEATIQSILTGTTLRTRNVLTERMQDPQQPAELRKIYAAMLAHLNDQRGRDYLLKSLEDRSPDAFDDTVFCLGTFPSL 436
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BLAST of mRNA_M-pyrifera_M_contig74019.17532.1 vs. uniprot
Match: A0A517V658_9PLAN (Uncharacterized protein n=2 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V658_9PLAN)

HSP 1 Score: 400 bits (1029), Expect = 9.260e-131
Identity = 196/362 (54.14%), Postives = 268/362 (74.03%), Query Frame = 1 
Query:    1 INGKANLNQLRFHLGSEKKGGWPTYQDIQALEREAFYKVRGQIVDGRIEEERTSIVLIVRHLEKIEPRPIMFADLVDRNTTFTGTAAENGTFVTEQGQ-AKLQGLEQWPQAVQGQQVFVRGTLRQQPNGFQIEQAIWHPADLELLVDKPVALEGTLWDENHPSFMKYEKEFLYLSFPPSRRAMFLQKYQHRRVPVRVSGTLVRESRPPLNWNGPDLEAPFQACYVIRDARVEYLLPADFEYDEYKAIYSRHP-VSQGVPELVAEYPFPGNRQEDPSDAQDFVWRNEATIQSILTGTTLRTRNVLTERMQDPQQPAELRKIYAAMLAHLNDQRGRDYLLKSLEDRSPDAFDDTVFCLGMFPSL 1080
            I G+ N +++ FHL S+   G P +++ +ALER  +Y+V+G+I+DGRI E   +I L+V  +E +  R I F+DLVDR +TF+GTAA  G  +T+Q Q A ++G+ +WP++V G+ + VRGT RQ+ +GF+IEQA WHP +L+ ++ + V+LEG LW + +  FM+YEK+FLYL++P +R  MFLQKY+ +RVPVRV+GTLVRE RP L W+GPDLE PFQ+CYVIRDA +EYLLP DF YD YK IYS  P VS+GVPEL+AEYP P N+Q +P+ A+ +  RNE TI+SI+   T    N+L +RMQD +Q + + KIYAAMLAHLNDQRGR YL+ SL++   D F DT+FCLG FP +
Sbjct:   74 IEGRVNEDKIFFHLCSDILTGKPAFKEFKALERGEYYRVQGRIIDGRICESEKAITLVVNKIELVPDRAIQFSDLVDRISTFSGTAAPQGMLLTDQQQRAFVEGISKWPESVAGKPIVVRGTFRQRSDGFRIEQATWHPLELKAMLGQRVSLEGVLWGDKNIRFMEYEKQFLYLAYPATRETMFLQKYEGKRVPVRVTGTLVREERPVLKWSGPDLEVPFQSCYVIRDASLEYLLPVDFHYDRYKPIYSSLPRVSEGVPELIAEYPPPANQQFNPAPARMYARRNEGTIKSIIAEATPDVCNILAKRMQDSRQNSAICKIYAAMLAHLNDQRGRSYLIDSLQNSGQDQFPDTLFCLGEFPFM 435
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BLAST of mRNA_M-pyrifera_M_contig74019.17532.1 vs. uniprot
Match: A0A517ZZD6_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A517ZZD6_9PLAN)

HSP 1 Score: 293 bits (749), Expect = 3.650e-91
Identity = 156/361 (43.21%), Postives = 220/361 (60.94%), Query Frame = 1 
Query:    1 INGKANLNQLRFHLGSEKKGGWPTYQDIQALEREAFYKVRGQIVDGRIEEERTSIVLIVRHLEKIEPRPIMFADLVDRNTTFTGTAAENGTFVTEQGQAKLQGLEQWPQAVQGQQVFVRGTLRQQPNGFQIEQAIWHPADLELLVDKPVALEGTLWDENHPSFMKYEKEFLYLSFPPSRRAMFLQKYQHRRVPVRVSGTLVRESRPPLNWNGPDLEAPFQACYVIRDARVEYLLPADFEYDEYKAIYSR-HPVSQGVPELVAEYPFPGNRQEDPSDAQDFVWRNEATIQSILTGTTLRTRNVLTERMQDPQQPAELRKIYAAMLAHLNDQRGRDYLLKSLEDRSPDAFDDTVFCLGMFPSL 1080
            ING+A+ +++ FHL   K GGWP Y+D ++L+R  FYK+RG I++GRI   R +  L+V+ +E +  R I  ADLVDR     G A   G     +G+A++  L  WP++V G+QVFVRGTLR+    FQI    WHP DL+ LV K V LEGT+  ++     +Y K++LYL  P      +   ++ RRV  RVSG L+ E RP LNWNGP  + P    YVI++A + +L   D E ++   IY+  + VS+GVPEL+AE    GN Q + +    ++ RNE  I  IL+  T  T+NVL  RM D +Q   +R IYAAMLAHLND+RG+ +L++S  D   +   D ++CLG+ PSL
Sbjct:   78 INGRASQDRIFFHLCRAKPGGWPAYKDFKSLKRYEFYKIRGHIIEGRINCARKAFTLVVKQMESVPSREIKLADLVDREIALEGIAVPGGIIKASEGEARIDQLTDWPESVLGKQVFVRGTLRKSQGTFQINALNWHPVDLDELVGKEVTLEGTISSDSKFKSFEYRKKYLYLEVPDELLWKYRGHFRDRRV--RVSGKLILEDRPELNWNGPKRKNPKSPWYVIQEASLTFLEKMDGESEDGIPIYATLYTVSEGVPELIAECAHRGNCQVNRATVMYYIRRNEEMINRILSQATPETQNVLARRMNDEKQHRLVRLIYAAMLAHLNDKRGQAFLIESTRDHDIEKLPDALYCLGIVPSL 436
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig74019.17532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A517PG51_9PLAN1.040e-25999.44Uncharacterized protein n=1 Tax=Gimesia chilikensi... [more]
A0A517V658_9PLAN9.260e-13154.14Uncharacterized protein n=2 Tax=Gimesia algae TaxI... [more]
A0A517ZZD6_9PLAN3.650e-9143.21Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig74019contigM-pyrifera_M_contig74019:4..1083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1080
Cds size1080
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.2337623-CDS-M-pyrifera_M_contig74019:3..10831622816638.2337623-CDS-M-pyrifera_M_contig74019:3..1083Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74019 4..1083 +
1692278092.0168176-CDS-M-pyrifera_M_contig74019:3..10831692278092.0168176-CDS-M-pyrifera_M_contig74019:3..1083Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig74019 4..1083 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig74019.17532.1prot_M-pyrifera_M_contig74019.17532.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig74019 4..1083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig74019.17532.1

>prot_M-pyrifera_M_contig74019.17532.1 ID=prot_M-pyrifera_M_contig74019.17532.1|Name=mRNA_M-pyrifera_M_contig74019.17532.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=360bp
INGKANLNQLRFHLGSEKKGGWPTYQDIQALEREAFYKVRGQIVDGRIEE
ERTSIVLIVRHLEKIEPRPIMFADLVDRNTTFTGTAAENGTFVTEQGQAK
LQGLEQWPQAVQGQQVFVRGTLRQQPNGFQIEQAIWHPADLELLVDKPVA
LEGTLWDENHPSFMKYEKEFLYLSFPPSRRAMFLQKYQHRRVPVRVSGTL
VRESRPPLNWNGPDLEAPFQACYVIRDARVEYLLPADFEYDEYKAIYSRH
PVSQGVPELVAEYPFPGNRQEDPSDAQDFVWRNEATIQSILTGTTLRTRN
VLTERMQDPQQPAELRKIYAAMLAHLNDQRGRDYLLKSLEDRSPDAFDDT
VFCLGMFPSL
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mRNA from alignment at M-pyrifera_M_contig74019:4..1083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig74019.17532.1 ID=mRNA_M-pyrifera_M_contig74019.17532.1|Name=mRNA_M-pyrifera_M_contig74019.17532.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig74019:4..1083+ (Macrocystis pyrifera P11B4 male)
ATCAATGGCAAGGCGAATCTGAATCAGTTGCGGTTTCATCTCGGCAGTGA
GAAAAAGGGAGGTTGGCCGACCTATCAGGATATACAGGCACTCGAACGGG
AAGCGTTTTACAAAGTACGCGGCCAGATCGTTGACGGGCGGATTGAAGAG
GAAAGAACGTCCATCGTCCTGATTGTCAGGCATCTCGAAAAAATCGAACC
CCGCCCGATCATGTTTGCCGATCTGGTTGATCGAAATACGACGTTTACAG
GAACCGCTGCGGAGAATGGTACCTTCGTCACCGAACAGGGGCAGGCGAAG
CTACAGGGTCTGGAGCAGTGGCCCCAGGCGGTGCAGGGCCAACAGGTCTT
TGTCCGGGGCACACTCCGTCAGCAGCCGAACGGTTTTCAGATTGAACAGG
CCATCTGGCATCCTGCCGATCTGGAACTACTGGTCGATAAGCCGGTTGCT
CTGGAAGGAACTCTCTGGGATGAGAACCATCCCAGCTTTATGAAGTACGA
GAAAGAGTTTCTCTATCTCTCATTTCCCCCCTCCCGCAGGGCAATGTTCC
TGCAGAAATATCAGCACAGACGCGTTCCCGTGCGCGTCTCGGGCACGCTG
GTCAGGGAGTCGCGTCCACCACTCAACTGGAACGGGCCCGATCTGGAAGC
GCCATTTCAAGCCTGTTACGTCATTCGCGATGCACGGGTTGAATATCTGC
TCCCGGCCGATTTTGAATATGACGAGTACAAAGCCATCTATTCCCGGCAT
CCTGTCAGTCAAGGGGTGCCGGAACTCGTGGCAGAATATCCCTTTCCCGG
AAACCGACAGGAAGATCCTTCCGATGCACAGGATTTTGTCTGGCGGAATG
AAGCGACGATACAATCTATTTTGACTGGTACGACTCTCCGGACGCGCAAT
GTCCTGACAGAGCGGATGCAGGATCCTCAACAGCCTGCAGAGTTACGTAA
GATCTATGCAGCGATGCTGGCACATCTGAATGACCAGCGGGGAAGAGATT
ATCTGCTGAAGTCACTGGAGGATCGTAGTCCGGATGCATTCGATGATACG
GTGTTCTGTCTCGGGATGTTTCCTTCACTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig74019:4..1083+

>mRNA_M-pyrifera_M_contig74019.17532.1 ID=mRNA_M-pyrifera_M_contig74019.17532.1|Name=mRNA_M-pyrifera_M_contig74019.17532.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2160bp|location=Sequence derived from alignment at M-pyrifera_M_contig74019:4..1083+ (Macrocystis pyrifera P11B4 male)
ATCAATGGCAAGGCGAATCTGAATCAGTTGCGGTTTCATCTCGGCAGTGA
GAAAAAGGGAGGTTGGCCGACCTATCAGGATATACAGGCACTCGAACGGG
AAGCGTTTTACAAAGTACGCGGCCAGATCGTTGACGGGCGGATTGAAGAG
GAAAGAACGTCCATCGTCCTGATTGTCAGGCATCTCGAAAAAATCGAACC
CCGCCCGATCATGTTTGCCGATCTGGTTGATCGAAATACGACGTTTACAG
GAACCGCTGCGGAGAATGGTACCTTCGTCACCGAACAGGGGCAGGCGAAG
CTACAGGGTCTGGAGCAGTGGCCCCAGGCGGTGCAGGGCCAACAGGTCTT
TGTCCGGGGCACACTCCGTCAGCAGCCGAACGGTTTTCAGATTGAACAGG
CCATCTGGCATCCTGCCGATCTGGAACTACTGGTCGATAAGCCGGTTGCT
CTGGAAGGAACTCTCTGGGATGAGAACCATCCCAGCTTTATGAAGTACGA
GAAAGAGTTTCTCTATCTCTCATTTCCCCCCTCCCGCAGGGCAATGTTCC
TGCAGAAATATCAGCACAGACGCGTTCCCGTGCGCGTCTCGGGCACGCTG
GTCAGGGAGTCGCGTCCACCACTCAACTGGAACGGGCCCGATCTGGAAGC
GCCATTTCAAGCCTGTTACGTCATTCGCGATGCACGGGTTGAATATCTGC
TCCCGGCCGATTTTGAATATGACGAGTACAAAGCCATCTATTCCCGGCAT
CCTGTCAGTCAAGGGGTGCCGGAACTCGTGGCAGAATATCCCTTTCCCGG
AAACCGACAGGAAGATCCTTCCGATGCACAGGATTTTGTCTGGCGGAATG
AAGCGACGATACAATCTATTTTGACTGGTACGACTCTCCGGACGCGCAAT
GTCCTGACAGAGCGGATGCAGGATCCTCAACAGCCTGCAGAGTTACGTAA
GATCTATGCAGCGATGCTGGCACATCTGAATGACCAGCGGGGAAGAGATT
ATCTGCTGAAGTCACTGGAGGATCGTAGTCCGGATGCATTCGATGATACG
GTGTTCTGTCTCGGGATGTTTCCTTCACTGATCAATGGCAAGGCGAATCT
GAATCAGTTGCGGTTTCATCTCGGCAGTGAGAAAAAGGGAGGTTGGCCGA
CCTATCAGGATATACAGGCACTCGAACGGGAAGCGTTTTACAAAGTACGC
GGCCAGATCGTTGACGGGCGGATTGAAGAGGAAAGAACGTCCATCGTCCT
GATTGTCAGGCATCTCGAAAAAATCGAACCCCGCCCGATCATGTTTGCCG
ATCTGGTTGATCGAAATACGACGTTTACAGGAACCGCTGCGGAGAATGGT
ACCTTCGTCACCGAACAGGGGCAGGCGAAGCTACAGGGTCTGGAGCAGTG
GCCCCAGGCGGTGCAGGGCCAACAGGTCTTTGTCCGGGGCACACTCCGTC
AGCAGCCGAACGGTTTTCAGATTGAACAGGCCATCTGGCATCCTGCCGAT
CTGGAACTACTGGTCGATAAGCCGGTTGCTCTGGAAGGAACTCTCTGGGA
TGAGAACCATCCCAGCTTTATGAAGTACGAGAAAGAGTTTCTCTATCTCT
CATTTCCCCCCTCCCGCAGGGCAATGTTCCTGCAGAAATATCAGCACAGA
CGCGTTCCCGTGCGCGTCTCGGGCACGCTGGTCAGGGAGTCGCGTCCACC
ACTCAACTGGAACGGGCCCGATCTGGAAGCGCCATTTCAAGCCTGTTACG
TCATTCGCGATGCACGGGTTGAATATCTGCTCCCGGCCGATTTTGAATAT
GACGAGTACAAAGCCATCTATTCCCGGCATCCTGTCAGTCAAGGGGTGCC
GGAACTCGTGGCAGAATATCCCTTTCCCGGAAACCGACAGGAAGATCCTT
CCGATGCACAGGATTTTGTCTGGCGGAATGAAGCGACGATACAATCTATT
TTGACTGGTACGACTCTCCGGACGCGCAATGTCCTGACAGAGCGGATGCA
GGATCCTCAACAGCCTGCAGAGTTACGTAAGATCTATGCAGCGATGCTGG
CACATCTGAATGACCAGCGGGGAAGAGATTATCTGCTGAAGTCACTGGAG
GATCGTAGTCCGGATGCATTCGATGATACGGTGTTCTGTCTCGGGATGTT
TCCTTCACTG
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