mRNA_M-pyrifera_M_contig7401.17527.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7401.17527.1
Unique NamemRNA_M-pyrifera_M_contig7401.17527.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7401.17527.1 vs. uniprot
Match: A0A6H5JUY0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.660e-24
Identity = 103/213 (48.36%), Postives = 117/213 (54.93%), Query Frame = 3 
Query:   18 MAQSWITEVSMEVDASETSQILNPPXXXXVXXXXXHVD--QPPSTATHVSDSTGAIA-----TLPGPASGFYQDPYSSFSQYGAAQQ-TDPQISQWTGYYGGYPMNTYASNNAQQHPGFPTSSYQGYNGFHGTQPQYGQAYPQQQWQGYAPLPHMHGVQPQPIAAQAPAFASQPPQPYGQPYLQTPETSPAVVYEAQPPLPVQEAPGSLVPLP 632
            MAQSWITEVSME+D +ET +     XXXX XXXXX     Q  +  ++ +   GA        +P  A  FYQDPYSSFSQYG AQQ  DPQ SQW GYY GY  N       Q +P  P  SYQGY      Q Q+GQ    QQW GYA        QPQP+A QA  + +Q P   GQPYL TPE        AQ P+P Q APG   PLP
Sbjct:    1 MAQSWITEVSMELD-TETPKPXXXXXXXXXXXXXXXXSAVQAGAQISYAAAPPGATGGGPNGVMPSGAPAFYQDPYSSFSQYGGAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYP--PAPSYQGYVQ-DAQQQQFGQQAYAQQWPGYATAV----PQPQPVAPQA--YPAQAPHLQGQPYLPTPEI-------AQAPVPAQ-APGIAAPLP 195
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BLAST of mRNA_M-pyrifera_M_contig7401.17527.1 vs. uniprot
Match: D7G4Q3_ECTSI (PCI domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.480e-24
Identity = 102/215 (47.44%), Postives = 112/215 (52.09%), Query Frame = 3 
Query:   18 MAQSWITEVSMEVDASETSQILNPPXXXXVXXXXXHVDQPPSTATHVSDSTGAIATLPGPASG------------FYQDPYSSFSQYGAAQQ-TDPQISQWTGYYGGYPMNTYASNNAQQHPGFPTSSYQGYNGFHGTQPQYGQAYPQQQWQGYAPLPHMHGVQPQPIAAQAPAFASQPPQPYGQPYLQTPETSPAVVYEAQPPLPVQEAPGSLV 623
            MAQSWITEVSME+DA        P  XXX XXXXX       +A          A  PGP  G            FYQDPYSSFSQYGAAQQ  DPQ SQW GYY GY  N       Q +P  P  SYQGY      Q Q+GQ    QQW GYA        QPQP+A QA  + +Q P   GQPYL TPE        AQPP+P Q APG+ +
Sbjct:    1 MAQSWITEVSMELDAE------TPKPXXXXXXXXXXXXXXXXSAVQAGAQISYAAAPPGPTGGGPNGIMPPGAPAFYQDPYSSFSQYGAAQQYADPQASQWAGYYPGYNYNNGHPQQYQAYP--PAPSYQGYVQ-DAQQQQFGQQAYAQQWAGYATAV----PQPQPVAPQA--YPAQAPYLQGQPYLPTPEI-------AQPPVPAQ-APGAFL 192
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7401.17527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUY0_9PHAE1.660e-2448.36Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7G4Q3_ECTSI4.480e-2447.44PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7401contigM-pyrifera_M_contig7401:10517..11505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D7G4Q3
Preferred nameLENG8
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.transcription, DNA-templated
EggNOG OGsKOG1861@1,KOG1861@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size648
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7401.17527.1prot_M-pyrifera_M_contig7401.17527.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7401 10517..11488 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.9744034-CDS-M-pyrifera_M_contig7401:10516..108941622816637.9744034-CDS-M-pyrifera_M_contig7401:10516..10894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7401 10517..10894 -
1692278091.8686037-CDS-M-pyrifera_M_contig7401:10516..108941692278091.8686037-CDS-M-pyrifera_M_contig7401:10516..10894Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7401 10517..10894 -
1622816637.9907901-CDS-M-pyrifera_M_contig7401:11236..114881622816637.9907901-CDS-M-pyrifera_M_contig7401:11236..11488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7401 11237..11488 -
1692278091.8826172-CDS-M-pyrifera_M_contig7401:11236..114881692278091.8826172-CDS-M-pyrifera_M_contig7401:11236..11488Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7401 11237..11488 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816638.0007856-UTR-M-pyrifera_M_contig7401:11488..115051622816638.0007856-UTR-M-pyrifera_M_contig7401:11488..11505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7401 11489..11505 -
1692278091.8919652-UTR-M-pyrifera_M_contig7401:11488..115051692278091.8919652-UTR-M-pyrifera_M_contig7401:11488..11505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7401 11489..11505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7401.17527.1

>prot_M-pyrifera_M_contig7401.17527.1 ID=prot_M-pyrifera_M_contig7401.17527.1|Name=mRNA_M-pyrifera_M_contig7401.17527.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=210bp
MAQSWITEVSMEVDASETSQILNPPPPPPVPAPPPHVDQPPSTATHVSDS
TGAIATLPGPASGFYQDPYSSFSQYGAAQQTDPQISQWTGYYGGYPMNTY
ASNNAQQHPGFPTSSYQGYNGFHGTQPQYGQAYPQQQWQGYAPLPHMHGV
QPQPIAAQAPAFASQPPQPYGQPYLQTPETSPAVVYEAQPPLPVQEAPGS
LVPLPPLPPP
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mRNA from alignment at M-pyrifera_M_contig7401:10517..11505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7401.17527.1 ID=mRNA_M-pyrifera_M_contig7401.17527.1|Name=mRNA_M-pyrifera_M_contig7401.17527.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=989bp|location=Sequence derived from alignment at M-pyrifera_M_contig7401:10517..11505- (Macrocystis pyrifera P11B4 male)
CTCCGCGCTATCGAGTTATGGCGCAATCGTGGATTACAGAGGTCAGCATG
GAGGTGGATGCGAGTGAGACATCTCAGATCCTAAACCCCCCACCCCCACC
ACCCGTCCCCGCGCCACCTCCTCATGTAGATCAGCCTCCAAGCACTGCTA
CCCACGTCTCAGATAGTACCGGGGCCATCGCTACGCTTCCAGGTCCTGCA
TCGGGCTTCTACCAGGATCCCTACAGCTCCTTCTCTCAGTACGGTGCAGC
GCAGCAGACAGATCCTCAGGTACGGAAGCTTCCCTAAATATGAATGTGGC
AGGACACGCGGTCGGAAGGTTCCACTCTTTCTCATTTGTTTGATTTTGTG
CCAGTCTCGTGAACCTTTATTAGTATGAGAATCTGTCTCCTGGCACTCGG
CACTCGTCAACAAAGAGGGTAAATGCGGCGTCTCTTGTATAGTTTCGTTC
GAGTGGTCGAGTGGGAAGTGCTGCCCCGCATTTCCTGTTGTTTTACTGCT
GTACCTGCGTAGTTTCCACAACAAAGCTGCACGCAAAGGGAACCCGGCTC
ACACTAATATGAACTCCTCCTCAAATCGTTGGCGCCGGACTTCTGCTGTA
CCTGGTATCAGATTTCTCAGTGGACTGGCTACTACGGAGGGTATCCAATG
AACACCTACGCCAGCAACAACGCGCAGCAGCACCCGGGCTTCCCCACTTC
TAGCTACCAGGGATACAACGGTTTTCACGGCACACAACCTCAGTATGGAC
AGGCTTACCCACAGCAGCAGTGGCAAGGGTATGCCCCTCTCCCTCATATG
CATGGCGTGCAACCCCAGCCAATCGCCGCACAGGCGCCAGCTTTTGCAAG
CCAGCCTCCCCAGCCTTACGGTCAACCGTATCTACAGACTCCCGAGACCT
CACCAGCAGTTGTATACGAAGCCCAGCCACCATTACCGGTACAAGAAGCA
CCAGGTAGTCTGGTACCGTTGCCGCCGCTGCCGCCGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7401:10517..11505-

>mRNA_M-pyrifera_M_contig7401.17527.1 ID=mRNA_M-pyrifera_M_contig7401.17527.1|Name=mRNA_M-pyrifera_M_contig7401.17527.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1260bp|location=Sequence derived from alignment at M-pyrifera_M_contig7401:10517..11505- (Macrocystis pyrifera P11B4 male)
ATGGCGCAATCGTGGATTACAGAGGTCAGCATGGAGGTGGATGCGAGTGA
GACATCTCAGATCCTAAACCCCCCACCCCCACCACCCGTCCCCGCGCCAC
CTCCTCATGTAGATCAGCCTCCAAGCACTGCTACCCACGTCTCAGATAGT
ACCGGGGCCATCGCTACGCTTCCAGGTCCTGCATCGGGCTTCTACCAGGA
TCCCTACAGCTCCTTCTCTCAGTACGGTGCAGCGCAGCAGACAGATCCTC
AGATGGCGCAATCGTGGATTACAGAGGTCAGCATGGAGGTGGATGCGAGT
GAGACATCTCAGATCCTAAACCCCCCACCCCCACCACCCGTCCCCGCGCC
ACCTCCTCATGTAGATCAGCCTCCAAGCACTGCTACCCACGTCTCAGATA
GTACCGGGGCCATCGCTACGCTTCCAGGTCCTGCATCGGGCTTCTACCAG
GATCCCTACAGCTCCTTCTCTCAGTACGGTGCAGCGCAGCAGACAGATCC
TCAGATTTCTCAGTGGACTGGCTACTACGGAGGGTATCCAATGAACACCT
ACGCCAGCAACAACGCGCAGCAGCACCCGGGCTTCCCCACTTCTAGCTAC
CAGGGATACAACGGTTTTCACGGCACACAACCTCAGTATGGACAGGCTTA
CCCACAGCAGCAGTGGCAAGGGTATGCCCCTCTCCCTCATATGCATGGCG
TGCAACCCCAGCCAATCGCCGCACAGGCGCCAGCTTTTGCAAGCCAGCCT
CCCCAGCCTTACGGTCAACCGTATCTACAGACTCCCGAGACCTCACCAGC
AGTTGTATACGAAGCCCAGCCACCATTACCGGTACAAGAAGCACCAGGTA
GTCTGGTACCGTTGCCGCCGCTGCCGCCGCCGATTTCTCAGTGGACTGGC
TACTACGGAGGGTATCCAATGAACACCTACGCCAGCAACAACGCGCAGCA
GCACCCGGGCTTCCCCACTTCTAGCTACCAGGGATACAACGGTTTTCACG
GCACACAACCTCAGTATGGACAGGCTTACCCACAGCAGCAGTGGCAAGGG
TATGCCCCTCTCCCTCATATGCATGGCGTGCAACCCCAGCCAATCGCCGC
ACAGGCGCCAGCTTTTGCAAGCCAGCCTCCCCAGCCTTACGGTCAACCGT
ATCTACAGACTCCCGAGACCTCACCAGCAGTTGTATACGAAGCCCAGCCA
CCATTACCGGTACAAGAAGCACCAGGTAGTCTGGTACCGTTGCCGCCGCT
GCCGCCGCCG
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