mRNA_M-pyrifera_M_contig7398.17521.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig7398.17521.1
Unique Name	mRNA_M-pyrifera_M_contig7398.17521.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig7398.17521.1 vs. uniprot
Match: D8LMK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMK9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.370e-25
Identity = 66/112 (58.93%), Postives = 76/112 (67.86%), Query Frame = 1

Query:    1 MPPTDCFGESDACSASLSCVAEQHRGLLLPTTRSPLHHGTDPDLSAPTPPPSGVAVTGLDLSPVTAGSCGL-VSMSKRKQRGSPARXXXXXXXXXXXGLMSSIPSRLSRSFP 333
            MPPTDCF ++ A  AS+S V E     LLPTTRSPLHHGTDPDLSAPTP PSGVA TGLDLSPV   +  + V+ +KRK RGSPAR           G +S + +RLSR FP
Sbjct:    1 MPPTDCFDDAGASCASMSGVPEPG---LLPTTRSPLHHGTDPDLSAPTPSPSGVAATGLDLSPVMGPTPTVFVTKAKRKLRGSPARGGGCGG-----GPVSPMATRLSRGFP 104

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig7398.17521.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig7398.17521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D8LMK9_ECTSI	3.370e-25	58.93	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig7398	contig	M-pyrifera_M_contig7398:10409..12826 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Zinc finger, TAZ-type
Ec32 ortholog	Ec-05_003120.1
Exons	4
Model size	804
Cds size	804
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig7398.17521.1	prot_M-pyrifera_M_contig7398.17521.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig7398 10409..12826 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816637.4905865-CDS-M-pyrifera_M_contig7398:10408..10464	1622816637.4905865-CDS-M-pyrifera_M_contig7398:10408..10464	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 10409..10464 +
1692278091.4864752-CDS-M-pyrifera_M_contig7398:10408..10464	1692278091.4864752-CDS-M-pyrifera_M_contig7398:10408..10464	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 10409..10464 +
1622816637.503447-CDS-M-pyrifera_M_contig7398:10806..10969	1622816637.503447-CDS-M-pyrifera_M_contig7398:10806..10969	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 10807..10969 +
1692278091.5017831-CDS-M-pyrifera_M_contig7398:10806..10969	1692278091.5017831-CDS-M-pyrifera_M_contig7398:10806..10969	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 10807..10969 +
1622816637.5145779-CDS-M-pyrifera_M_contig7398:11833..11980	1622816637.5145779-CDS-M-pyrifera_M_contig7398:11833..11980	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 11834..11980 +
1692278091.5156584-CDS-M-pyrifera_M_contig7398:11833..11980	1692278091.5156584-CDS-M-pyrifera_M_contig7398:11833..11980	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 11834..11980 +
1622816637.52626-CDS-M-pyrifera_M_contig7398:12388..12826	1622816637.52626-CDS-M-pyrifera_M_contig7398:12388..12826	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 12389..12826 +
1692278091.5277746-CDS-M-pyrifera_M_contig7398:12388..12826	1692278091.5277746-CDS-M-pyrifera_M_contig7398:12388..12826	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig7398 12389..12826 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig7398:10409..12826+
coding sequence from alignment at M-pyrifera_M_contig7398:10409..12826+

protein sequence of mRNA_M-pyrifera_M_contig7398.17521.1

>prot_M-pyrifera_M_contig7398.17521.1 ID=prot_M-pyrifera_M_contig7398.17521.1|Name=mRNA_M-pyrifera_M_contig7398.17521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=268bp
MPPTDCFGESDACSASLSCVAEQHRGLLLPTTRSPLHHGTDPDLSAPTPP
PSGVAVTGLDLSPVTAGSCGLVSMSKRKQRGSPARGRGRGAGGGGGGLMS
SIPSRLSRSFPHEARAESQAKREGEAPPPGLMPLGGGSRPASGDVSPTSP
SPAFTRAAAGGATAGSINSSAAAAGMVQQHCCSPPSSPSPSSPPSSGGAA
TAGSPVPAANGSDCAAVSRADSGVANNNSSGSAAAVAATQDSKQAALKAM
MLKAKMASDNIRLLLHAQ

mRNA from alignment at M-pyrifera_M_contig7398:10409..12826+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig7398.17521.1 ID=mRNA_M-pyrifera_M_contig7398.17521.1|Name=mRNA_M-pyrifera_M_contig7398.17521.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2418bp|location=Sequence derived from alignment at M-pyrifera_M_contig7398:10409..12826+ (Macrocystis pyrifera P11B4 male)
ATGCCCCCAACGGACTGCTTCGGCGAATCCGACGCTTGCAGCGCCTCGCT
CTCGTGGTGAGTCTCGGCTGTAGCTCTCGCAGTGGTGGCTTGCTTGATTG
CTTTTTGACAGAGTGGTTGATTCTCGTTTGTCGATCGCACGACGAGAAGG
GCATCGAGTGCATAGAAACTCCACACCCTCTGAGCTTCTCGCCATGTCTT
ACCTCGGTAGGCACCTTCAGCGCTCCCAGTGCCGCGTGGCCCTGGTCGGG
TTGGCGCCCGGAGTTGCTGTGCCGGAGCTGTACTGCATGCAACATCGAGA
TGACCACTCTATCGATCGGCCCTCGGTCCTCCCCATAAATGTCGTTGTTT
GTTGTTTCTCGCTCTTTCTGAACAACACCTCAACTCGCATCTCACCAGTG
TTGCCGAGCAGCATCGAGGACTGCTGTTGCCCACGACGCGGTCACCACTG
CACCATGGCACTGACCCAGACCTATCTGCACCAACCCCTCCCCCTTCGGG
CGTAGCGGTCACTGGGCTAGACCTGTCTCCCGTCACTGCGGGCAGCTGTG
GGCTGGTGAGTGTCCAGTTCCCTGCAATGTACCTTTCTTTGCACGTCCCC
ACCCACCCCCTCTTTTTCTTTTCACTGCTGAACTGTGTTGTAGGTATGGG
CAACATTTGTGTTAAAATACGTATATATCACACCATCTGTCCAAACCAGA
CAAAGTCGCAGGTTGGTACTAATGTCTACCAGGTACCTGGTATATTTTAT
TGTAGTGATGTGGTGTTGTTTCAAAAGCGCGGAGCGAATCGATTCGGAAC
TCTATGAAGGACAGCCAGTTTAGAGAGGTTCCTCAAAGACACGCTTCGCA
CCCTCTGCTTATGACGAGCGATGGGTGCACTGCTGCCGTACTCTCTGCGG
TTCCTATCCCTCGTCAAGCACCTTGTTGCTGCCTCCAGTTGATGGACCTT
TTCGTCTCTCATATCGCTAGGCTCGGTTGGTGCCAAGCGAGTGAGTGATT
GGACTGGCTTGACTAACCATCAAGGCGTTTCCGCTCGTGTTTCGACCAAC
AGACGAATTCGTGGTGTGCTGTCATATTTATTTTCTTGCAACCCATAGCG
GCGGCAGCAGCAGCAGCGGCACCTGCCTCTGCTGGCCAAACCCGATAAGC
ACAGCTTGTTTCGTTATTATAAATCAGTGTATATATACTCTCCTCCCCCT
TTCACCCCGAAACCCTCGCTTTAGATCCTACGCACGCCATGAACATCACC
CACTCAAGTACCTGGTACTAAAAGCAGGTATTATTAATAATAGACGGGTC
TGGTTGCCCAAACCTTAACCTAGCGAGCCATTCTGTACGCAACTACTCAA
CTGACCCTTCACCTTATCCCCGCTGACTGACTGCCGTCTTTGCTTGTTTG
ATACTGGTATCATATAACTCTTTAGATGTCCAAACGCAAGCAGCGAGGTA
GTCCTGCTAGAGGACGAGGACGAGGAGCAGGAGGAGGAGGAGGAGGTCTC
ATGTCCTCGATACCGTCCCGTCTTTCAAGAAGCTTTCCACACGAGGCAAG
GGCTGAGTCTCAGGCCAAGCGCGTGGCAACCCTCATCCCTCTCGAGGAAT
CGCCCCAGAAGCAACACCAGCACCAGCAAGCCCGGCCTGCAATGCACAGC
AGTCCGGCAGCAGCAAAAGCCCGAGCAGCGGCAGCAGCAGTAAAAACGAC
AACAGCAGCAACAAGAATAGCCGCAGCAACAACAACCTCCAGCAGCAGAG
AAGAACCCAGCAGCAGCAGCAGCAGCAGCTACAGTATGCCTGGCAGCAGC
ACCTTGCCAAGAAGCGGTGCCACTGCTGGTGCTGGTGTTGCTTTCGCGGA
AGCAAGCTTGCGGGTCGCCTTTAAAGAGGAAGAAGTGGTGGAGCCGGGTC
GTGGGGCGCTGTTTGTGGGGCGTATGGAGTCTGCTAGTCGAGGGGAATGG
GACCAGCATGATTGCCAGAGAGCACCGGAGGAGGGGGAGGCCCCCCCTCC
CGGTTTGATGCCTCTCGGTGGCGGCTCCCGTCCAGCCTCTGGGGATGTAT
CTCCTACCTCTCCTTCTCCTGCTTTCACTCGTGCTGCTGCCGGTGGTGCT
ACTGCTGGTTCTATCAACAGCAGTGCTGCAGCTGCCGGGATGGTGCAGCA
GCATTGCTGTTCGCCACCCTCTTCTCCCTCCCCCTCATCACCACCATCAT
CTGGAGGTGCTGCTACTGCTGGTAGCCCTGTTCCTGCTGCTAATGGCAGT
GATTGTGCTGCTGTTAGTCGTGCGGACTCTGGCGTTGCTAATAATAATAG
TAGTGGGAGTGCTGCTGCTGTGGCGGCGACGCAAGACAGCAAGCAGGCGG
CATTGAAAGCGATGATGTTGAAGGCCAAGATGGCTTCGGACAACATCCGA
CTACTTTTGCATGCACAG

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7398:10409..12826+

>mRNA_M-pyrifera_M_contig7398.17521.1 ID=mRNA_M-pyrifera_M_contig7398.17521.1|Name=mRNA_M-pyrifera_M_contig7398.17521.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1608bp|location=Sequence derived from alignment at M-pyrifera_M_contig7398:10409..12826+ (Macrocystis pyrifera P11B4 male)
ATGCCCCCAACGGACTGCTTCGGCGAATCCGACGCTTGCAGCGCCTCGCT
CTCGTGATGCCCCCAACGGACTGCTTCGGCGAATCCGACGCTTGCAGCGC
CTCGCTCTCGTGTGTTGCCGAGCAGCATCGAGGACTGCTGTTGCCCACGA
CGCGGTCACCACTGCACCATGGCACTGACCCAGACCTATCTGCACCAACC
CCTCCCCCTTCGGGCGTAGCGGTCACTGGGCTAGACCTGTCTCCCGTCAC
TGCGGGCAGCTGTGGGCTGGTGAGTTGTTGCCGAGCAGCATCGAGGACTG
CTGTTGCCCACGACGCGGTCACCACTGCACCATGGCACTGACCCAGACCT
ATCTGCACCAACCCCTCCCCCTTCGGGCGTAGCGGTCACTGGGCTAGACC
TGTCTCCCGTCACTGCGGGCAGCTGTGGGCTGGTGAGTATGTCCAAACGC
AAGCAGCGAGGTAGTCCTGCTAGAGGACGAGGACGAGGAGCAGGAGGAGG
AGGAGGAGGTCTCATGTCCTCGATACCGTCCCGTCTTTCAAGAAGCTTTC
CACACGAGGCAAGGGCTGAGTCTCAGGCCAAGCGCATGTCCAAACGCAAG
CAGCGAGGTAGTCCTGCTAGAGGACGAGGACGAGGAGCAGGAGGAGGAGG
AGGAGGTCTCATGTCCTCGATACCGTCCCGTCTTTCAAGAAGCTTTCCAC
ACGAGGCAAGGGCTGAGTCTCAGGCCAAGCGCGAGGGGGAGGCCCCCCCT
CCCGGTTTGATGCCTCTCGGTGGCGGCTCCCGTCCAGCCTCTGGGGATGT
ATCTCCTACCTCTCCTTCTCCTGCTTTCACTCGTGCTGCTGCCGGTGGTG
CTACTGCTGGTTCTATCAACAGCAGTGCTGCAGCTGCCGGGATGGTGCAG
CAGCATTGCTGTTCGCCACCCTCTTCTCCCTCCCCCTCATCACCACCATC
ATCTGGAGGTGCTGCTACTGCTGGTAGCCCTGTTCCTGCTGCTAATGGCA
GTGATTGTGCTGCTGTTAGTCGTGCGGACTCTGGCGTTGCTAATAATAAT
AGTAGTGGGAGTGCTGCTGCTGTGGCGGCGACGCAAGACAGCAAGCAGGC
GGCATTGAAAGCGATGATGTTGAAGGCCAAGATGGCTTCGGACAACATCC
GACTACTTTTGCATGCACAGGAGGGGGAGGCCCCCCCTCCCGGTTTGATG
CCTCTCGGTGGCGGCTCCCGTCCAGCCTCTGGGGATGTATCTCCTACCTC
TCCTTCTCCTGCTTTCACTCGTGCTGCTGCCGGTGGTGCTACTGCTGGTT
CTATCAACAGCAGTGCTGCAGCTGCCGGGATGGTGCAGCAGCATTGCTGT
TCGCCACCCTCTTCTCCCTCCCCCTCATCACCACCATCATCTGGAGGTGC
TGCTACTGCTGGTAGCCCTGTTCCTGCTGCTAATGGCAGTGATTGTGCTG
CTGTTAGTCGTGCGGACTCTGGCGTTGCTAATAATAATAGTAGTGGGAGT
GCTGCTGCTGTGGCGGCGACGCAAGACAGCAAGCAGGCGGCATTGAAAGC
GATGATGTTGAAGGCCAAGATGGCTTCGGACAACATCCGACTACTTTTGC
ATGCACAG