mRNA_M-pyrifera_M_contig73916.17510.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73916.17510.1
Unique NamemRNA_M-pyrifera_M_contig73916.17510.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: D8LT19_ECTSI (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT19_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 1.120e-38
Identity = 74/99 (74.75%), Postives = 81/99 (81.82%), Query Frame = 1
Query:    1 PPPPPALSRV------YLHCQPMDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSV 279
            PPP P +SR       Y   QPM R +RLELREE+REMF+HSYDGYMRHAFPGGEL PLSC +GELHLVKVPLVTLVD+LDALAIMGN +EFRRAVR V
Sbjct:  226 PPPKPFVSRQQRGFLEYDRRQPMSRDRRLELREEIREMFIHSYDGYMRHAFPGGELLPLSCGSGELHLVKVPLVTLVDSLDALAIMGNATEFRRAVRLV 324          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A6H5KKI4_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKI4_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 2.930e-37
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1
Query:   49 MDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSV 279
            M R++RLELREE+REMF+HSYDGYMRHAFPGGEL PLSC +GELHLVKVPLVTLVD+LDALAIMGN +EFRRAVR V
Sbjct:    1 MTRERRLELREEIREMFIHSYDGYMRHAFPGGELLPLSCGSGELHLVKVPLVTLVDSLDALAIMGNATEFRRAVRLV 77          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A835ZFD6_9STRA (alpha-1,2-Mannosidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFD6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.140e-24
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   49 MDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSV 279
            M R +RL LRE  R MF H YDGYMR+A+P GELRPLSC  GE  L K+P VTL+D +D LA+MGN +EFRRAV  V
Sbjct:  285 MTRDERLRLRERARAMFTHGYDGYMRYAYPAGELRPLSCSGGEFELCKLPQVTLIDAMDTLAVMGNHTEFRRAVALV 361          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A0N7L3K7_PLAHL (alpha-1,2-Mannosidase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L3K7_PLAHL)

HSP 1 Score: 91.7 bits (226), Expect = 2.100e-19
Identity = 41/84 (48.81%), Postives = 61/84 (72.62%), Query Frame = 1
Query:   28 VYLHCQPMDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSV 279
            V+     MD ++R+ L + V+EMF H+Y+GYM +AFP  +L PLSC+ GE  L ++P++TL+DTLD LA++ + +EFRRAV  V
Sbjct:  226 VFTAPTSMDEEERMALTQTVKEMFYHAYNGYMANAFPQDDLLPLSCKGGEFELGRLPMLTLIDTLDTLALLEDATEFRRAVELV 309          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A7S0SUI6_9STRA (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUI6_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.740e-19
Identity = 37/76 (48.68%), Postives = 54/76 (71.05%), Query Frame = 1
Query:   55 RKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSVE 282
            ++K+ EL + VR +F+  YD YM++ FP G+L P+SC+     L+K+PLVTL+DT D L +MGN SEFRR V  ++
Sbjct:   62 KRKQQELLDRVRNVFIEGYDAYMKYGFPHGDLLPISCRGASFDLIKIPLVTLIDTADTLVVMGNYSEFRRVVGIID 137          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: G4YQL8_PHYSP (alpha-1,2-Mannosidase n=3 Tax=Phytophthora TaxID=4783 RepID=G4YQL8_PHYSP)

HSP 1 Score: 89.7 bits (221), Expect = 9.910e-19
Identity = 40/77 (51.95%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   49 MDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSV 279
            M+ ++R  L + VR+MF H+Y+GY+ HAFP  +L PLSC+ GE  L ++P++TLVDTLD LA++ + +EFRRAV  V
Sbjct:  152 MEEEERQALTKTVRDMFYHAYNGYLTHAFPQDDLLPLSCRGGEFELGRLPMLTLVDTLDTLAVLEDATEFRRAVALV 228          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A024G4J3_9STRA (alpha-1,2-Mannosidase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4J3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.830e-18
Identity = 40/85 (47.06%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   25 RVYLHCQPMDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSV 279
            + ++    M+ ++RLE  + V++MF H+Y GYM HAFP   L PL+C+ GE  L K+PL+TL+D LD LAI+ +  EF R VR V
Sbjct:   77 KTFVEANGMEEEERLEWLQIVKDMFYHAYHGYMEHAFPSDNLLPLTCRGGEFALSKIPLLTLIDALDMLAILEDRVEFERGVRYV 161          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A329SLX5_9STRA (alpha-1,2-Mannosidase n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SLX5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.530e-18
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   49 MDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAV 270
            M+  +R  L + VREMF H+Y+GY+ HAFP  +L PLSC+ GE  L ++P++TL+DTLD LA++ + +EFRRAV
Sbjct:  240 MEEDEREALTKTVREMFYHAYNGYLTHAFPQDDLLPLSCRGGEFELGRLPMLTLIDTLDTLALLEDATEFRRAV 313          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A024G3N5_9STRA (alpha-1,2-Mannosidase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G3N5_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.390e-18
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   31 YLHCQPMDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSV 279
            ++    M+ ++RLE  + V++MF H+Y GYM HAFP   L PL+C+ GE  L K+PL+TL+D LD LAI+ +  EF R VR V
Sbjct:   14 FVEANGMEEEERLEWLQIVKDMFYHAYHGYMEHAFPSDNLLPLTCRGGEFALSKIPLLTLIDALDMLAILEDRVEFERGVRYV 96          
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Match: A0A3M6VJ70_9STRA (alpha-1,2-Mannosidase n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJ70_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.430e-18
Identity = 38/74 (51.35%), Postives = 57/74 (77.03%), Query Frame = 1
Query:   49 MDRKKRLELREEVREMFVHSYDGYMRHAFPGGELRPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAV 270
            M   +R+ L + V++MF H+Y+GY+ HAFP  +L+PLSC+ GE  L ++P++TL+DTLD LA+M + +EFRRAV
Sbjct:   74 MKEDERIALTKTVKDMFYHAYNGYLIHAFPLDDLQPLSCRGGEFELGRLPMLTLIDTLDTLAVMEDATEFRRAV 147          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73916.17510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT19_ECTSI1.120e-3874.75alpha-1,2-Mannosidase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5KKI4_9PHAE2.930e-3784.42alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A835ZFD6_9STRA1.140e-2463.64alpha-1,2-Mannosidase n=1 Tax=Tribonema minus TaxI... [more]
A0A0N7L3K7_PLAHL2.100e-1948.81alpha-1,2-Mannosidase n=1 Tax=Plasmopara halstedii... [more]
A0A7S0SUI6_9STRA3.740e-1948.68alpha-1,2-Mannosidase (Fragment) n=1 Tax=Chromulin... [more]
G4YQL8_PHYSP9.910e-1951.95alpha-1,2-Mannosidase n=3 Tax=Phytophthora TaxID=4... [more]
A0A024G4J3_9STRA1.830e-1847.06alpha-1,2-Mannosidase n=1 Tax=Albugo candida TaxID... [more]
A0A329SLX5_9STRA2.530e-1852.70alpha-1,2-Mannosidase n=2 Tax=Phytophthora TaxID=4... [more]
A0A024G3N5_9STRA3.390e-1848.19alpha-1,2-Mannosidase n=1 Tax=Albugo candida TaxID... [more]
A0A3M6VJ70_9STRA3.430e-1851.35alpha-1,2-Mannosidase n=2 Tax=Peronospora effusa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73916contigM-pyrifera_M_contig73916:124..745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue6.4e-16
Seed eggNOG ortholog4787.PITG_02266T0
KEGG koko:K01191,ko:K01230,ko:K10084,ko:K10085
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00511,ko00513,ko01100,ko04141,map00510,map00511,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0006464,GO:0006491,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009100,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030246,GO:0030433,GO:0031090,GO:0031974,GO:0031984,GO:0033554,GO:0034976,GO:0035977,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0070013,GO:0071704,GO:0097466,GO:0098588,GO:0098791,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1904380,GO:1904382,GO:1904587
EggNOG free text desc.Glycosyl hydrolase family 47
EggNOG OGs3Q9ZU@4776,KOG2429@1,KOG2429@2759
EC3.2.1.113,3.2.1.24
COG Functional cat.G
CAZyGH38,GH47
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04091,ko04131
Exons2
Model size309
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816637.0381625-CDS-M-pyrifera_M_contig73916:123..3151622816637.0381625-CDS-M-pyrifera_M_contig73916:123..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73916 124..315 +
1692278091.240935-CDS-M-pyrifera_M_contig73916:123..3151692278091.240935-CDS-M-pyrifera_M_contig73916:123..315Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73916 124..315 +
1622816637.0491045-CDS-M-pyrifera_M_contig73916:628..7451622816637.0491045-CDS-M-pyrifera_M_contig73916:628..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73916 629..745 +
1692278091.2552314-CDS-M-pyrifera_M_contig73916:628..7451692278091.2552314-CDS-M-pyrifera_M_contig73916:628..745Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73916 629..745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73916.17510.1prot_M-pyrifera_M_contig73916.17510.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73916 124..745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73916.17510.1

>prot_M-pyrifera_M_contig73916.17510.1 ID=prot_M-pyrifera_M_contig73916.17510.1|Name=mRNA_M-pyrifera_M_contig73916.17510.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
PPPPPALSRVYLHCQPMDRKKRLELREEVREMFVHSYDGYMRHAFPGGEL
RPLSCQAGELHLVKVPLVTLVDTLDALAIMGNTSEFRRAVRSVEFAKFLS
LS*
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mRNA from alignment at M-pyrifera_M_contig73916:124..745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73916.17510.1 ID=mRNA_M-pyrifera_M_contig73916.17510.1|Name=mRNA_M-pyrifera_M_contig73916.17510.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=622bp|location=Sequence derived from alignment at M-pyrifera_M_contig73916:124..745+ (Macrocystis pyrifera P11B4 male)
CCGCCCCCCCCGCCTGCCTTATCACGTGTATATCTCCATTGTCAGCCGAT GGACCGAAAAAAGCGCTTGGAGCTCCGAGAGGAAGTTCGCGAGATGTTTG TCCACTCTTACGACGGTTACATGAGGCACGCCTTCCCCGGGGGTGAACTC CGTCCCCTCTCGTGCCAGGCTGGCGAGCTGCACCTCGTAAAGGTGAGGAT GCGTTTCGTGTTGTTGTTCGTGATGACGGCGATGAGGTTGCCGGTGTGGT TGTCGGTAGGTGGCGGTGGGGTGTTGTTGTTGAACGTTGCTGTCGGAGCG GCTGCGGTTGGCTTGGTGGCATTAGTGTCTATTCTGTTGTTGGTGGGCTG GGAATTGTTGGTGCTTTCGCTGATGCCGTTAGTACTGCTGTTGTTGTTTT TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGATGATTTTCTCACGT GCATCCCCGACTCGCTTTGCTTTATCGCTTTCGCTCTCTCTCTCTATTGA AACAGGTGCCTCTTGTAACCCTGGTGGACACCCTGGATGCCCTGGCGATC ATGGGAAACACCTCCGAGTTTAGAAGAGCCGTGAGGTCAGTCGAGTTCGC GAAATTTCTCTCTCTCTCTTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73916:124..745+

>mRNA_M-pyrifera_M_contig73916.17510.1 ID=mRNA_M-pyrifera_M_contig73916.17510.1|Name=mRNA_M-pyrifera_M_contig73916.17510.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig73916:124..745+ (Macrocystis pyrifera P11B4 male)
CCGCCCCCCCCGCCTGCCTTATCACGTGTATATCTCCATTGTCAGCCGAT
GGACCGAAAAAAGCGCTTGGAGCTCCGAGAGGAAGTTCGCGAGATGTTTG
TCCACTCTTACGACGGTTACATGAGGCACGCCTTCCCCGGGGGTGAACTC
CGTCCCCTCTCGTGCCAGGCTGGCGAGCTGCACCTCGTAAAGCCGCCCCC
CCCGCCTGCCTTATCACGTGTATATCTCCATTGTCAGCCGATGGACCGAA
AAAAGCGCTTGGAGCTCCGAGAGGAAGTTCGCGAGATGTTTGTCCACTCT
TACGACGGTTACATGAGGCACGCCTTCCCCGGGGGTGAACTCCGTCCCCT
CTCGTGCCAGGCTGGCGAGCTGCACCTCGTAAAGGTGCCTCTTGTAACCC
TGGTGGACACCCTGGATGCCCTGGCGATCATGGGAAACACCTCCGAGTTT
AGAAGAGCCGTGAGGTCAGTCGAGTTCGCGAAATTTCTCTCTCTCTCTTA
AGTGCCTCTTGTAACCCTGGTGGACACCCTGGATGCCCTGGCGATCATGG
GAAACACCTCCGAGTTTAGAAGAGCCGTGAGGTCAGTCGAGTTCGCGAAA
TTTCTCTCTCTCTCTTAA
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