mRNA_M-pyrifera_M_contig73897.17506.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73897.17506.1
Unique NamemRNA_M-pyrifera_M_contig73897.17506.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: A0A7S1QII4_NEODS (Hypothetical protein (Fragment) n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1QII4_NEODS)

HSP 1 Score: 89.4 bits (220), Expect = 7.530e-20
Identity = 47/102 (46.08%), Postives = 68/102 (66.67%), Query Frame = 1
Query:   34 ILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDANARSNVAWELEELK 339
            IL+TK H+  + P  +E+D++ FLD+DL+ILG+P+E Y  YA  + +EY H PRDAY +GR  VLR+      A  F T+E   +L  NAR N+AWE+ +L+
Sbjct:   65 ILQTKNHT--TCPLDAEKDLRLFLDMDLAILGAPKERYTEYAEQIAREYSHYPRDAYCAGRAKVLRTFA--VDAHLFKTEELSERLLKNARENLAWEITQLE 162          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: A0A4D9D6N9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6N9_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.190e-18
Identity = 54/138 (39.13%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 SKEDLLYAGALILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAP---------------ASPFFTDEARAKLDANARSNVAWELEELKLGKIPGEDGE 369
            SKED+    A I+ TK H +S +P V ++D+  FLD+D+SILG PRE Y  YA  +R EY HVPR  Y+  R  +L S +                   AS F+ +E    L+  AR N+A E+  L+ G IP E+ E
Sbjct:    2 SKEDIGVVHAYIMATKTHQMSQSPEV-DDDLALFLDIDMSILGQPREIYMRYAGAIRAEYKHVPRSLYLEKRAQILSSFIEGGEKYIKGGRQTLRREIYASQFYKNE----LEEQARDNIAGEIYMLRRGIIPYEEKE 134          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: W7U6F4_9STRA (Hd phosphohydrolase family protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6F4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.190e-17
Identity = 55/138 (39.86%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    1 SKEDLLYAGALILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAP---------------ASPFFTDEARAKLDANARSNVAWELEELKLGKIPGEDGE 369
            SKED+    A IL TK H +S +P V ++D+  FLD+D+SILG PRE Y  YA  +R E+ HVPR  Y+  R  +L S +                   AS F+ +E    L+  AR N+A E+  L+ G IP ED E
Sbjct:  127 SKEDIGVVHAYILATKTHQMSQSPEV-DDDLALFLDIDMSILGQPREIYMRYAGAIRAEHKHVPRSLYLEKRAQILSSFIEGGGKYIKGGRQSLRREIYASQFYKNE----LEEQARDNIAGEIYMLRRGVIPYEDKE 259          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: UPI001C897F3B (hypothetical protein n=1 Tax=Qipengyuania polymorpha TaxID=2867234 RepID=UPI001C897F3B)

HSP 1 Score: 75.9 bits (185), Expect = 1.840e-14
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   13 LLYAGALILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDANARSNVAWELEELKLG 345
            L+ A   IL T+ H +  AP  +  DI  FLD+DL+ILG+  E ++ Y   +R+EY HVP DA+  GR+AVL      A    +F+D    + +  AR+N+A  +  L  G
Sbjct:   88 LVLAETAILATEGHRMPEAPPGAASDIAHFLDMDLAILGASEERFDIYERQIRREYAHVPEDAFRKGRSAVLEGFA--ARERLYFSDWGYERFEMKARANLARSIAALHAG 196          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: A0A835ZF01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF01_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.980e-14
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   34 ILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDANARSNVAWELEELKLGKIP 354
            I+ TK HS  S+P  ++ ++   LDLDL++LG PRE Y+ YA  +R+EY  VP   Y S R AVLR L   APA  + T       +A AR N+A E+ +L+ G IP
Sbjct:  117 IIATKTHS--SSPATADSNLAALLDLDLAVLGRPREGYQQYASQIRREYSFVPAAEYCSKRAAVLRQLAA-APAL-YRTQHFATTHEARARENLAAEIAQLERGDIP 219          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: UPI00035E12B5 (hypothetical protein n=1 Tax=Algicola sagamiensis TaxID=163869 RepID=UPI00035E12B5)

HSP 1 Score: 73.2 bits (178), Expect = 2.480e-13
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   31 LILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDANARSNVAWELEEL 336
            +IL TK H  + +    +E +   LD D++ILG  R+EYE YA+ VRKE++HVP+  Y  GR   LR ++  +  S + TD  RA+ +A AR N+  EL+ L
Sbjct:  112 IILATKNHQPTES---RDEAMLSVLDADMAILGQTRDEYEQYAVAVRKEFVHVPKFLYQRGRVQFLREVL--SLTSIYHTDWFRAQFEAQARLNIQAELQSL 208          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: A0A0Q8BD47_9HYPH (Uncharacterized protein n=1 Tax=Mesorhizobium sp. Root157 TaxID=1736477 RepID=A0A0Q8BD47_9HYPH)

HSP 1 Score: 70.5 bits (171), Expect = 2.300e-12
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   28 ALILRTKKHSLSSAPRVSE-EDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFF--TDEARAKLDANARSNVAWELEELK 339
            A+IL T  H +     +    D   FLD+DLSILG+  E ++AY   +R+EY  VP DA+I+GR+AVLR+ +      P+   ++E R +L+  AR+N+   L  LK
Sbjct:   96 AMILATAMHEVPVFANIDAVRDAALFLDMDLSILGASPEVFDAYEAAIRREYAWVPEDAWIAGRSAVLRTFLD----RPYIYHSEEFRVRLEHRARANIERSLASLK 198          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: A0A2J9DZZ7_9GAMM (Uncharacterized protein n=1 Tax=Psychrobacter sp. FDAARGOS_221 TaxID=1975705 RepID=A0A2J9DZZ7_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 2.500e-12
Identity = 46/110 (41.82%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   28 ALILRTKKHSLSSAPRVSEE-------DIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDANARSNVAWELEEL 336
            ALI+ T KH +S A    E+       D + FLD+DL+ILGSPR+ Y+ YA  VR EY HV   A+  GR AVL   +       +FT    A+ + NAR N+  E+ EL
Sbjct:  145 ALIMMTAKHEVSQADAELEQKITLKVQDSQYFLDMDLAILGSPRQVYQDYARQVRLEYAHVNDSAFKQGRKAVLERFLQRE--RLYFTQAFYAEYEQNARHNIQQEIREL 252          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: UPI001C88CEF9 (hypothetical protein n=1 Tax=Qipengyuania vesicularis TaxID=2867232 RepID=UPI001C88CEF9)

HSP 1 Score: 69.7 bits (169), Expect = 4.070e-12
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   22 AGALILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDANARSNVAWELEELK 339
            A A+IL T+ H +         DI  FLD+DL ILG+  E ++ Y   +R+EY HVP +A+  GR AVL S         +F++  R + +  AR N+A  LE L+
Sbjct:   92 AEAMILATEGHIMPDIAGDDGSDIAHFLDMDLGILGASEERFDIYEDQIRREYSHVPDEAFRKGRAAVLESFA--GRERLYFSEWGRDRFEERARRNLARSLERLR 195          
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Match: A0A1F7WA82_9BACT (Uncharacterized protein n=1 Tax=Candidatus Uhrbacteria bacterium RIFOXYB2_FULL_45_11 TaxID=1802421 RepID=A0A1F7WA82_9BACT)

HSP 1 Score: 69.7 bits (169), Expect = 5.380e-12
Identity = 45/102 (44.12%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   37 LRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYEAYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDANARSNVAWELEELKL 342
            +R  KH    A   SE D +  +D+DLSILG P   YEAY   +R EY  +P   YI GR  V+RS +  A    F T   R + +A AR+N+A ELE LKL
Sbjct:  117 IRATKH----AETPSENDAQIMVDVDLSILGQPWNVYEAYTHQIRTEYKRIPNLLYIPGRHKVMRSFLDRA--YIFSTANFRVRYEAQARANIARELETLKL 212          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73897.17506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1QII4_NEODS7.530e-2046.08Hypothetical protein (Fragment) n=1 Tax=Neobodo de... [more]
A0A4D9D6N9_9STRA1.190e-1839.13Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7U6F4_9STRA1.190e-1739.86Hd phosphohydrolase family protein n=1 Tax=Nannoch... [more]
UPI001C897F3B1.840e-1437.84hypothetical protein n=1 Tax=Qipengyuania polymorp... [more]
A0A835ZF01_9STRA1.980e-1443.93Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI00035E12B52.480e-1341.18hypothetical protein n=1 Tax=Algicola sagamiensis ... [more]
A0A0Q8BD47_9HYPH2.300e-1239.25Uncharacterized protein n=1 Tax=Mesorhizobium sp. ... [more]
A0A2J9DZZ7_9GAMM2.500e-1241.82Uncharacterized protein n=1 Tax=Psychrobacter sp. ... [more]
UPI001C88CEF94.070e-1237.74hypothetical protein n=1 Tax=Qipengyuania vesicula... [more]
A0A1F7WA82_9BACT5.380e-1244.12Uncharacterized protein n=1 Tax=Candidatus Uhrbact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73897contigM-pyrifera_M_contig73897:4..432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.0
Seed ortholog evalue1.8e-15
Seed eggNOG ortholog65672.G4T9B0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein present in Fab1, YOTB, Vac1, and EEA1
EggNOG OGs22FS2@155619,39MPV@33154,3H93F@355688,3Q6D4@4751,3V7MR@5204,KOG1729@1,KOG1729@2759
COG Functional cat.T
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons2
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.7315345-CDS-M-pyrifera_M_contig73897:3..761622816636.7315345-CDS-M-pyrifera_M_contig73897:3..76Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73897 4..76 +
1692278091.0116158-CDS-M-pyrifera_M_contig73897:3..761692278091.0116158-CDS-M-pyrifera_M_contig73897:3..76Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73897 4..76 +
1622816636.744857-CDS-M-pyrifera_M_contig73897:118..4321622816636.744857-CDS-M-pyrifera_M_contig73897:118..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73897 119..432 +
1692278091.0295937-CDS-M-pyrifera_M_contig73897:118..4321692278091.0295937-CDS-M-pyrifera_M_contig73897:118..432Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73897 119..432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73897.17506.1prot_M-pyrifera_M_contig73897.17506.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73897 4..432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73897.17506.1

>prot_M-pyrifera_M_contig73897.17506.1 ID=prot_M-pyrifera_M_contig73897.17506.1|Name=mRNA_M-pyrifera_M_contig73897.17506.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
SKEDLLYAGALILRTKKHSLSSAPRVSEEDIKRFLDLDLSILGSPREEYE
AYAIGVRKEYIHVPRDAYISGRTAVLRSLVPPAPASPFFTDEARAKLDAN
ARSNVAWELEELKLGKIPGEDGEGGGGQ*
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mRNA from alignment at M-pyrifera_M_contig73897:4..432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73897.17506.1 ID=mRNA_M-pyrifera_M_contig73897.17506.1|Name=mRNA_M-pyrifera_M_contig73897.17506.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=429bp|location=Sequence derived from alignment at M-pyrifera_M_contig73897:4..432+ (Macrocystis pyrifera P11B4 male)
TCAAAAGAGGACCTGTTGTATGCCGGTGCGCTGATTTTGCGGACGAAGAA ACATTCGTTGTCTTCAGCACCAAGTGACATAGTTTCTATTGGTGAATATT CTTCACATTGGGAAGGGGTGTCTGAAGAAGACATAAAACGCTTCCTAGAT CTTGATCTGTCGATCTTAGGAAGCCCGCGTGAAGAATATGAGGCATACGC AATTGGCGTGCGCAAAGAGTACATCCATGTTCCTCGTGATGCCTACATCT CTGGTCGCACAGCTGTTCTCCGCTCTCTGGTGCCCCCAGCGCCAGCGTCG CCATTCTTCACTGACGAAGCAAGAGCAAAGCTGGATGCGAATGCAAGGTC GAATGTCGCTTGGGAATTGGAAGAGCTGAAGCTGGGCAAGATTCCAGGAG AAGACGGGGAAGGAGGAGGGGGGCAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73897:4..432+

>mRNA_M-pyrifera_M_contig73897.17506.1 ID=mRNA_M-pyrifera_M_contig73897.17506.1|Name=mRNA_M-pyrifera_M_contig73897.17506.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig73897:4..432+ (Macrocystis pyrifera P11B4 male)
TCAAAAGAGGACCTGTTGTATGCCGGTGCGCTGATTTTGCGGACGAAGAA
ACATTCGTTGTCTTCAGCACCAATCAAAAGAGGACCTGTTGTATGCCGGT
GCGCTGATTTTGCGGACGAAGAAACATTCGTTGTCTTCAGCACCAAGGGT
GTCTGAAGAAGACATAAAACGCTTCCTAGATCTTGATCTGTCGATCTTAG
GAAGCCCGCGTGAAGAATATGAGGCATACGCAATTGGCGTGCGCAAAGAG
TACATCCATGTTCCTCGTGATGCCTACATCTCTGGTCGCACAGCTGTTCT
CCGCTCTCTGGTGCCCCCAGCGCCAGCGTCGCCATTCTTCACTGACGAAG
CAAGAGCAAAGCTGGATGCGAATGCAAGGTCGAATGTCGCTTGGGAATTG
GAAGAGCTGAAGCTGGGCAAGATTCCAGGAGAAGACGGGGAAGGAGGAGG
GGGGCAATGAGGGTGTCTGAAGAAGACATAAAACGCTTCCTAGATCTTGA
TCTGTCGATCTTAGGAAGCCCGCGTGAAGAATATGAGGCATACGCAATTG
GCGTGCGCAAAGAGTACATCCATGTTCCTCGTGATGCCTACATCTCTGGT
CGCACAGCTGTTCTCCGCTCTCTGGTGCCCCCAGCGCCAGCGTCGCCATT
CTTCACTGACGAAGCAAGAGCAAAGCTGGATGCGAATGCAAGGTCGAATG
TCGCTTGGGAATTGGAAGAGCTGAAGCTGGGCAAGATTCCAGGAGAAGAC
GGGGAAGGAGGAGGGGGGCAATGA
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