mRNA_M-pyrifera_M_contig73887.17500.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73887.17500.1
Unique NamemRNA_M-pyrifera_M_contig73887.17500.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73887.17500.1 vs. uniprot
Match: UPI001CC76EFC (tetratricopeptide repeat protein n=1 Tax=Ferruginibacter sp. KIS38-8 TaxID=2875540 RepID=UPI001CC76EFC)

HSP 1 Score: 115 bits (287), Expect = 2.290e-25
Identity = 97/335 (28.96%), Postives = 156/335 (46.57%), Query Frame = 1 
Query:    4 PSSADIQLELAMCLHRAGEFKAAAASYEAYIESPTAKSRGPGVFDALLADCLIRAGKYERACDAWERVPFRSYRIKISKYAHKIHGDASPFQRHYDLLTRARQKDLDAGAQMILLDCEWDWDWWTVEVKRDFLEADSSELGKLFSAADKRLILIQA-ISAFHLPEEPNVAFFTETLKKNNLIIGDTPELPSHGLLVSHAVRLLLENELSTPENLLGIHEGRFEAELLQPADEI-DVEMVNVYASLLAQ-SGKLEALARTDRLMWQKCKEPRFAASYLMSLIRDEKDLSDKEVQRIAREFPDHRVVSSIALSLAVEENQSLSEPLAVAIAAEFQSL 999
            P   +  LE A+ LHR GEF+ AA  YE Y +      R     +  LADC I  G  E++ + W +    ++   I    H I+G     +   D      Q +++A   +ILLD  W+ DWW   ++  FL  D        +  D    +IQA +   +L +  N +   +++   N +I D+  LP++G L S  +R+   N++ + EN      G    +LL  A +  D E +N+YA L A  + K+++    D+L W   K+ RFA SY M    D+    DKE+ +   +FP+   +  +  + A  EN+ L   L   I  EF++L
Sbjct:   57 PEDLNFNLEYAIELHRNGEFEEAAKLYEKYEKEKPEDFR----VNVWLADCYINIGDVEKSIENWNKSDHPNHHTSIDFAIHTIYGRTDQIKLRNDYRKEIEQGNIEAFYPLILLDMNWELDWWNSVIQEYFLAEDLLLAKNKLNQNDNDYKIIQAYVKIKNLSKSGNNSDSIKSILIQNKLIMDSNPLPTNGQLTSDLLRICFINKILS-ENDFYKQRGN---DLLNLAKKTKDKETLNIYAYLQATVNDKVDSFI--DKLGWTDFKDERFAISYFMGKA-DKNRYDDKELSQALADFPNSSKLYWVKANCAKIENKPLRPILIELIKREFKTL 380
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73887.17500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001CC76EFC2.290e-2528.96tetratricopeptide repeat protein n=1 Tax=Ferrugini... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73887contigM-pyrifera_M_contig73887:16..1026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score122.5
Seed ortholog evalue3.8e-25
Seed eggNOG ortholog880071.Fleli_0695
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs47UG4@768503,4P0FD@976,COG0457@1,COG0457@2
COG Functional cat.S
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size1011
Cds size1011
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.496356-CDS-M-pyrifera_M_contig73887:15..10261622816636.496356-CDS-M-pyrifera_M_contig73887:15..1026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73887 16..1026 +
1692278090.9038944-CDS-M-pyrifera_M_contig73887:15..10261692278090.9038944-CDS-M-pyrifera_M_contig73887:15..1026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73887 16..1026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73887.17500.1prot_M-pyrifera_M_contig73887.17500.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73887 16..1026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73887.17500.1

>prot_M-pyrifera_M_contig73887.17500.1 ID=prot_M-pyrifera_M_contig73887.17500.1|Name=mRNA_M-pyrifera_M_contig73887.17500.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=337bp
DPSSADIQLELAMCLHRAGEFKAAAASYEAYIESPTAKSRGPGVFDALLA
DCLIRAGKYERACDAWERVPFRSYRIKISKYAHKIHGDASPFQRHYDLLT
RARQKDLDAGAQMILLDCEWDWDWWTVEVKRDFLEADSSELGKLFSAADK
RLILIQAISAFHLPEEPNVAFFTETLKKNNLIIGDTPELPSHGLLVSHAV
RLLLENELSTPENLLGIHEGRFEAELLQPADEIDVEMVNVYASLLAQSGK
LEALARTDRLMWQKCKEPRFAASYLMSLIRDEKDLSDKEVQRIAREFPDH
RVVSSIALSLAVEENQSLSEPLAVAIAAEFQSLTPNP
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mRNA from alignment at M-pyrifera_M_contig73887:16..1026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73887.17500.1 ID=mRNA_M-pyrifera_M_contig73887.17500.1|Name=mRNA_M-pyrifera_M_contig73887.17500.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1011bp|location=Sequence derived from alignment at M-pyrifera_M_contig73887:16..1026+ (Macrocystis pyrifera P11B4 male)
GATCCATCGAGTGCCGACATTCAGTTGGAGCTCGCAATGTGCCTCCACAG
AGCTGGAGAATTCAAGGCTGCAGCGGCTTCCTATGAGGCGTACATTGAGT
CACCGACAGCGAAATCGAGAGGGCCCGGCGTGTTTGACGCTCTCCTGGCA
GACTGCCTGATCAGGGCGGGGAAATACGAGAGGGCTTGCGATGCATGGGA
GCGCGTCCCATTTAGATCGTATCGCATCAAAATTTCAAAATACGCCCACA
AGATCCATGGCGACGCCAGCCCATTTCAGCGGCATTACGACCTTTTGACT
CGTGCGAGACAGAAGGACCTTGACGCTGGTGCTCAGATGATCCTGCTCGA
TTGCGAGTGGGATTGGGATTGGTGGACTGTTGAGGTCAAGCGTGACTTCC
TTGAGGCCGATTCCAGCGAGTTGGGCAAGCTGTTTTCAGCTGCTGACAAG
CGACTGATTTTGATTCAGGCAATCTCGGCGTTTCATCTACCGGAAGAGCC
CAATGTTGCCTTCTTCACAGAGACGCTAAAAAAGAACAACTTGATCATTG
GTGATACACCGGAATTACCCAGCCATGGGCTATTGGTTTCACATGCAGTT
CGGCTGCTTCTGGAAAACGAACTGTCGACTCCAGAAAACTTGCTAGGAAT
TCACGAGGGTCGATTTGAAGCCGAGCTATTACAACCCGCTGACGAAATCG
ATGTTGAGATGGTGAACGTCTACGCGAGCTTGCTCGCGCAGTCTGGCAAG
CTCGAGGCATTGGCACGAACTGATCGACTAATGTGGCAGAAATGCAAAGA
ACCTCGGTTTGCGGCAAGTTACCTTATGTCACTTATCCGCGATGAGAAGG
ACCTTTCGGACAAGGAAGTCCAACGGATCGCTAGAGAGTTCCCCGATCAT
CGGGTGGTCAGCAGTATTGCACTGTCGCTTGCGGTCGAAGAAAACCAGAG
CCTTAGCGAGCCTCTCGCTGTCGCAATCGCGGCGGAGTTTCAGTCACTAA
CGCCCAACCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73887:16..1026+

>mRNA_M-pyrifera_M_contig73887.17500.1 ID=mRNA_M-pyrifera_M_contig73887.17500.1|Name=mRNA_M-pyrifera_M_contig73887.17500.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2022bp|location=Sequence derived from alignment at M-pyrifera_M_contig73887:16..1026+ (Macrocystis pyrifera P11B4 male)
GATCCATCGAGTGCCGACATTCAGTTGGAGCTCGCAATGTGCCTCCACAG
AGCTGGAGAATTCAAGGCTGCAGCGGCTTCCTATGAGGCGTACATTGAGT
CACCGACAGCGAAATCGAGAGGGCCCGGCGTGTTTGACGCTCTCCTGGCA
GACTGCCTGATCAGGGCGGGGAAATACGAGAGGGCTTGCGATGCATGGGA
GCGCGTCCCATTTAGATCGTATCGCATCAAAATTTCAAAATACGCCCACA
AGATCCATGGCGACGCCAGCCCATTTCAGCGGCATTACGACCTTTTGACT
CGTGCGAGACAGAAGGACCTTGACGCTGGTGCTCAGATGATCCTGCTCGA
TTGCGAGTGGGATTGGGATTGGTGGACTGTTGAGGTCAAGCGTGACTTCC
TTGAGGCCGATTCCAGCGAGTTGGGCAAGCTGTTTTCAGCTGCTGACAAG
CGACTGATTTTGATTCAGGCAATCTCGGCGTTTCATCTACCGGAAGAGCC
CAATGTTGCCTTCTTCACAGAGACGCTAAAAAAGAACAACTTGATCATTG
GTGATACACCGGAATTACCCAGCCATGGGCTATTGGTTTCACATGCAGTT
CGGCTGCTTCTGGAAAACGAACTGTCGACTCCAGAAAACTTGCTAGGAAT
TCACGAGGGTCGATTTGAAGCCGAGCTATTACAACCCGCTGACGAAATCG
ATGTTGAGATGGTGAACGTCTACGCGAGCTTGCTCGCGCAGTCTGGCAAG
CTCGAGGCATTGGCACGAACTGATCGACTAATGTGGCAGAAATGCAAAGA
ACCTCGGTTTGCGGCAAGTTACCTTATGTCACTTATCCGCGATGAGAAGG
ACCTTTCGGACAAGGAAGTCCAACGGATCGCTAGAGAGTTCCCCGATCAT
CGGGTGGTCAGCAGTATTGCACTGTCGCTTGCGGTCGAAGAAAACCAGAG
CCTTAGCGAGCCTCTCGCTGTCGCAATCGCGGCGGAGTTTCAGTCACTAA
CGCCCAACCCGGATCCATCGAGTGCCGACATTCAGTTGGAGCTCGCAATG
TGCCTCCACAGAGCTGGAGAATTCAAGGCTGCAGCGGCTTCCTATGAGGC
GTACATTGAGTCACCGACAGCGAAATCGAGAGGGCCCGGCGTGTTTGACG
CTCTCCTGGCAGACTGCCTGATCAGGGCGGGGAAATACGAGAGGGCTTGC
GATGCATGGGAGCGCGTCCCATTTAGATCGTATCGCATCAAAATTTCAAA
ATACGCCCACAAGATCCATGGCGACGCCAGCCCATTTCAGCGGCATTACG
ACCTTTTGACTCGTGCGAGACAGAAGGACCTTGACGCTGGTGCTCAGATG
ATCCTGCTCGATTGCGAGTGGGATTGGGATTGGTGGACTGTTGAGGTCAA
GCGTGACTTCCTTGAGGCCGATTCCAGCGAGTTGGGCAAGCTGTTTTCAG
CTGCTGACAAGCGACTGATTTTGATTCAGGCAATCTCGGCGTTTCATCTA
CCGGAAGAGCCCAATGTTGCCTTCTTCACAGAGACGCTAAAAAAGAACAA
CTTGATCATTGGTGATACACCGGAATTACCCAGCCATGGGCTATTGGTTT
CACATGCAGTTCGGCTGCTTCTGGAAAACGAACTGTCGACTCCAGAAAAC
TTGCTAGGAATTCACGAGGGTCGATTTGAAGCCGAGCTATTACAACCCGC
TGACGAAATCGATGTTGAGATGGTGAACGTCTACGCGAGCTTGCTCGCGC
AGTCTGGCAAGCTCGAGGCATTGGCACGAACTGATCGACTAATGTGGCAG
AAATGCAAAGAACCTCGGTTTGCGGCAAGTTACCTTATGTCACTTATCCG
CGATGAGAAGGACCTTTCGGACAAGGAAGTCCAACGGATCGCTAGAGAGT
TCCCCGATCATCGGGTGGTCAGCAGTATTGCACTGTCGCTTGCGGTCGAA
GAAAACCAGAGCCTTAGCGAGCCTCTCGCTGTCGCAATCGCGGCGGAGTT
TCAGTCACTAACGCCCAACCCG
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