mRNA_M-pyrifera_M_contig73820.17494.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73820.17494.1
Unique NamemRNA_M-pyrifera_M_contig73820.17494.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: UPI000A2A4E3C (armadillo repeat-containing protein 6 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4E3C)

HSP 1 Score: 78.6 bits (192), Expect = 2.060e-14
Identity = 48/108 (44.44%), Postives = 67/108 (62.04%), Query Frame = 1
Query:   22 KRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEELAAGAVAAAPDLDQLERSCASLEALCGEEERGKEYA 345
            KRISQETFD  V+EN++EFEM++D+A+ADA  QFE + VDLSNI+   V   G + S G    HPV  A E +     ++ PD  QL ++  SL+  C  +   K++A
Sbjct:    5 KRISQETFDAVVKENLDEFEMDLDEAVADAKQQFESQNVDLSNIITSFVLEEGSSGSEGLRHSHPVKDALESIQNTLHSSNPD--QLVKALESLQLQCSSDNENKKFA 110          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: A0A067CSD9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CSD9_SAPPC)

HSP 1 Score: 77.0 bits (188), Expect = 7.310e-14
Identity = 47/94 (50.00%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    1 MSFRSVRKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEELAA-GAVAAAPDLDQ 279
            M+ +  +K+I+QETF++CVRENMEEFEM+ D+A+ADA+ QFE +GVDLS+IV          +++  + VHPVV A E L A  A A    LDQ
Sbjct:    1 MATKQAKKQITQETFNDCVRENMEEFEMDEDEAVADAIKQFESQGVDLSSIV----------KALTTSVVHPVVVALESLRALAADATVVTLDQ 84          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: A0A1V9YJN2_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJN2_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.850e-13
Identity = 42/77 (54.55%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   10 RSVRKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEEL 240
            R  +K+I+QETF++CVRENMEEFEME  +A+ADA+AQFE +GVDLS+IV          +S+    VHPVV+A + L
Sbjct:    3 RKTKKQITQETFNDCVRENMEEFEMEEAEAVADAIAQFESQGVDLSSIV----------KSLTTTLVHPVVAALDAL 69          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: UPI001B88A90D (armadillo repeat-containing protein 6-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88A90D)

HSP 1 Score: 74.7 bits (182), Expect = 4.630e-13
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   22 KRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPD-SVKRGGDARSVGEAAVHPVVSACEEL 240
            K+ISQ+TFD+ VRENM+EFEM+V++A+ DAV QF+ +GV L NIV D S+  GGD     + AVHPVV+A E L
Sbjct:    3 KQISQQTFDDVVRENMQEFEMDVEEAVQDAVEQFQSQGVGLDNIVKDASMYTGGDGE---KPAVHPVVAALETL 73          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: UPI00145843EA (armadillo repeat-containing protein 6-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145843EA)

HSP 1 Score: 73.9 bits (180), Expect = 8.640e-13
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1
Query:   22 KRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEEL 240
            K I+Q+TFD+ VRENMEEF M+ D+AI DAV QFE +GV+LSNIV DS    G     G+AA HPVVSA + L
Sbjct:    3 KVIAQQTFDDVVRENMEEFGMDADEAIDDAVQQFESQGVNLSNIVQDSRLFSGQ----GDAAEHPVVSAIKNL 71          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: G4ZTR9_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZTR9_PHYSP)

HSP 1 Score: 72.8 bits (177), Expect = 2.260e-12
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   13 SVRKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEELAAGAVAAAPDLDQLERSCASLEALCGEEERGKEYALLAGERLAVEAL 381
            + R++ISQETFDECV EN+EEF+M +++A+ADAV QF  +GVDLSNI+     +  D +    A +  ++S  +EL+        + DQ+      L+++C   E   E  ++AG   AV+ L
Sbjct:    3 AARRQISQETFDECVAENVEEFDMSLEEAVADAVQQFGSQGVDLSNIIKSGAAQSADGQEPLPARLKRLISELQELSK----LKSEQDQVLNLVTELQSVC---EEVPEARVVAGRNDAVDTL 118          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: A0A225VVT2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VVT2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 3.090e-12
Identity = 46/126 (36.51%), Postives = 77/126 (61.11%), Query Frame = 1
Query:   19 RKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEELAAGAVAAAPDLDQLERSCASLEALCGEEERGKEYALLAGERLAVEALCTAVG 396
            R++ISQETFDECV EN+E+F+M +++AIADAV QFE +GVDLSNI+     +  D +    A +  +++  ++++        + DQ+ +  A L+++C   E   E  ++AG   A++ L   +G
Sbjct:    5 RRQISQETFDECVAENVEDFDMSLEEAIADAVQQFESQGVDLSNIIKSGATQTADGQEPLPARLKRLIAELQDVSK----LKNEQDQVLKLVAELQSVC---EEVPEARVVAGRNDAIDTLVELLG 123          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: A0A3F2RG48_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG48_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.680e-12
Identity = 37/80 (46.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 MSFRSVRKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEEL 240
            M+  +VRK+ISQETFDECV EN+E+F+M  ++A+ADAV QFE +GVDLSNI+     +  D +    A +  +++  +E+
Sbjct:    1 MTTTAVRKQISQETFDECVAENVEDFDMSPEEAVADAVRQFESQGVDLSNIIKSGSAKSSDGQEPLPARLKRLIAELKEV 80          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: A0A485L499_9STRA (Aste57867_15918 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L499_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.750e-12
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    4 SFRSVRKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEEL 240
            +FR+ +++I+Q+TF+ECVRENMEEF+M  +DAIADAV QFE +GVDLS IV   V              HPV++A   L
Sbjct:   12 AFRAPKRQITQDTFNECVRENMEEFDMSEEDAIADAVTQFESQGVDLSTIVKSLVT------------AHPVLTALHAL 78          
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Match: A0A6A3U5I2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3U5I2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.800e-12
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = 1
Query:   13 SVRKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSNIVPDSVKRGGDARSVGEAAVHPVVSACEELAAGAVAAAPDLDQLERSCASLEALCGEEERGKEYALLAGERLAVEAL 381
            + R++ISQETFDECV EN+EEF+M +++A+ADAV QFE +GVDLSNI+     +  D +    A +  +++    L+        + DQ+    A L+++C   E   E  ++AG   AV+ L
Sbjct:    3 AARRQISQETFDECVAENVEEFDMSLEEAVADAVQQFESQGVDLSNIIKSGAVQSADGQEPLPALLKRLIAELRGLST----LEHEPDQVLSLVAQLQSVC---EEVPEARVVAGRNDAVDTL 118          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73820.17494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000A2A4E3C2.060e-1444.44armadillo repeat-containing protein 6 n=1 Tax=Exai... [more]
A0A067CSD9_SAPPC7.310e-1450.00Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YJN2_9STRA1.850e-1354.55Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
UPI001B88A90D4.630e-1358.11armadillo repeat-containing protein 6-like n=1 Tax... [more]
UPI00145843EA8.640e-1360.27armadillo repeat-containing protein 6-like n=1 Tax... [more]
G4ZTR9_PHYSP2.260e-1238.21Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225VVT2_9STRA3.090e-1236.51Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A3F2RG48_9STRA5.680e-1246.25Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A485L499_9STRA7.750e-1250.63Aste57867_15918 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3U5I2_9STRA7.800e-1238.21Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73820contigM-pyrifera_M_contig73820:505..900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue8e-11
Seed eggNOG ortholog67593.Physo133152
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Armadillo/beta-catenin-like repeats
EggNOG OGs3QCDV@4776,KOG4199@1,KOG4199@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-19_000330.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816636.040007-CDS-M-pyrifera_M_contig73820:504..9001622816636.040007-CDS-M-pyrifera_M_contig73820:504..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73820 505..900 +
1692278090.5700579-CDS-M-pyrifera_M_contig73820:504..9001692278090.5700579-CDS-M-pyrifera_M_contig73820:504..900Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73820 505..900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73820.17494.1prot_M-pyrifera_M_contig73820.17494.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73820 505..900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73820.17494.1

>prot_M-pyrifera_M_contig73820.17494.1 ID=prot_M-pyrifera_M_contig73820.17494.1|Name=mRNA_M-pyrifera_M_contig73820.17494.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MSFRSVRKRISQETFDECVRENMEEFEMEVDDAIADAVAQFEGEGVDLSN
IVPDSVKRGGDARSVGEAAVHPVVSACEELAAGAVAAAPDLDQLERSCAS
LEALCGEEERGKEYALLAGERLAVEALCTAVG
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mRNA from alignment at M-pyrifera_M_contig73820:505..900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73820.17494.1 ID=mRNA_M-pyrifera_M_contig73820.17494.1|Name=mRNA_M-pyrifera_M_contig73820.17494.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig73820:505..900+ (Macrocystis pyrifera P11B4 male)
ATGTCGTTTCGTTCTGTTCGGAAGCGCATTTCTCAGGAGACGTTCGACGA GTGCGTTCGGGAGAACATGGAGGAGTTCGAGATGGAGGTGGACGATGCGA TAGCGGACGCGGTGGCGCAGTTCGAGGGGGAGGGGGTGGACTTGTCGAAC ATCGTGCCGGACTCTGTGAAGCGTGGGGGCGACGCGCGGTCGGTGGGTGA GGCGGCGGTGCACCCTGTGGTTTCTGCGTGCGAGGAGCTCGCGGCGGGGG CTGTGGCGGCTGCCCCAGACTTGGATCAGTTGGAACGGAGTTGTGCCTCG TTGGAGGCGCTGTGCGGGGAGGAGGAGCGGGGCAAGGAGTATGCGCTGCT GGCCGGGGAGCGTCTTGCGGTGGAAGCACTGTGTACAGCTGTCGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73820:505..900+

>mRNA_M-pyrifera_M_contig73820.17494.1 ID=mRNA_M-pyrifera_M_contig73820.17494.1|Name=mRNA_M-pyrifera_M_contig73820.17494.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig73820:505..900+ (Macrocystis pyrifera P11B4 male)
ATGTCGTTTCGTTCTGTTCGGAAGCGCATTTCTCAGGAGACGTTCGACGA
GTGCGTTCGGGAGAACATGGAGGAGTTCGAGATGGAGGTGGACGATGCGA
TAGCGGACGCGGTGGCGCAGTTCGAGGGGGAGGGGGTGGACTTGTCGAAC
ATCGTGCCGGACTCTGTGAAGCGTGGGGGCGACGCGCGGTCGGTGGGTGA
GGCGGCGGTGCACCCTGTGGTTTCTGCGTGCGAGGAGCTCGCGGCGGGGG
CTGTGGCGGCTGCCCCAGACTTGGATCAGTTGGAACGGAGTTGTGCCTCG
TTGGAGGCGCTGTGCGGGGAGGAGGAGCGGGGCAAGGAGTATGCGCTGCT
GGCCGGGGAGCGTCTTGCGGTGGAAGCACTGTGTACAGCTGTCGGAATGT
CGTTTCGTTCTGTTCGGAAGCGCATTTCTCAGGAGACGTTCGACGAGTGC
GTTCGGGAGAACATGGAGGAGTTCGAGATGGAGGTGGACGATGCGATAGC
GGACGCGGTGGCGCAGTTCGAGGGGGAGGGGGTGGACTTGTCGAACATCG
TGCCGGACTCTGTGAAGCGTGGGGGCGACGCGCGGTCGGTGGGTGAGGCG
GCGGTGCACCCTGTGGTTTCTGCGTGCGAGGAGCTCGCGGCGGGGGCTGT
GGCGGCTGCCCCAGACTTGGATCAGTTGGAACGGAGTTGTGCCTCGTTGG
AGGCGCTGTGCGGGGAGGAGGAGCGGGGCAAGGAGTATGCGCTGCTGGCC
GGGGAGCGTCTTGCGGTGGAAGCACTGTGTACAGCTGTCGGA
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