mRNA_M-pyrifera_M_contig73815.17492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73815.17492.1
Unique NamemRNA_M-pyrifera_M_contig73815.17492.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73815.17492.1 vs. uniprot
Match: A0A7S2F533_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F533_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.080e-18
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:    1 EEALCLTNGDVIARLPPHKRQAAEAVLEEFCRGFNLALPQIELLFQCQPNPFRTVDGKVDLSG--TGRQE---------------QAMDRSTPITFSLPSAIQGIVDAPGLCTIKVVGLLQQTHNSVLEAL 342
            ++AL +TN +V+A LP  ++     VL+ +   FN  LP +  L++CQ NPF   +G+VDLSG  T  ++                 M   TPI FSLPSA  G VDA GLCTI+++  L+  HN  + AL
Sbjct:  875 DDALSITNAEVVAWLPTSRQSEGWEVLDRYIAAFNRTLPLVPNLYECQRNPFLNQEGEVDLSGGQTSTEDAHGDGGDPSTQDVTPDVMSPDTPIAFSLPSAPPGTVDATGLCTIQIIRTLEGLHNETMVAL 1005
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BLAST of mRNA_M-pyrifera_M_contig73815.17492.1 vs. uniprot
Match: A0A812L3D3_SYMMI (RNF213 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812L3D3_SYMMI)

HSP 1 Score: 87.8 bits (216), Expect = 8.580e-17
Identity = 45/118 (38.14%), Postives = 67/118 (56.78%), Query Frame = 1 
Query:    1 EEALCLTNGDVIARL-PPHKRQAAEAVLEEFCRGFNLALPQIELLFQCQPNPFRTVDGKVDLSG--TGRQEQAMDRSTPITFSLPSAIQGIVDAPGLCTIKVVGLLQQTHNSVLEALR 345
            E+A   +N +++  + PP + +    VL  FC  FN     +  L++C PNPF T DG+VDLSG   G  +  M   T + FSLP+A  G  +A GLCTI+++  LQ  HN +  +L+
Sbjct: 3505 EQAGTWSNIEIVRDIAPPDRLEEGLRVLRAFCAAFNQCFNLVGFLYECNPNPFLTEDGRVDLSGGKRGGDDVCMGDGTTVNFSLPTAFHGETEAAGLCTIRLLTTLQDAHNRIAISLK 3622
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BLAST of mRNA_M-pyrifera_M_contig73815.17492.1 vs. uniprot
Match: A0A7S2DZL2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DZL2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.990e-15
Identity = 53/134 (39.55%), Postives = 67/134 (50.00%), Query Frame = 1 
Query:    1 EEALCLTNGDVIARLPPHKR-QAAEAVLEEFCRGFNLALPQIELLFQCQPNPFRTVDG-KVDLSGTGR------------------QEQAMDRSTPITFSLPSAIQGIVDAPGLCTIKVVGLLQQTHNSVLEAL 342
            E A   TN +  + L  H     A+ +LE +C  FN   P+++ L++CQ NPF   DG  VDLSG GR                      M  STPI FSLPS + G  DA GLCT+K +  LQ THN +L  L
Sbjct:  298 EAAAMTTNAEAASLLDTHTDIHGADELLERYCVAFNRCFPRVKYLYECQKNPFLHEDGCGVDLSG-GRGLGDNNDSTHGNDGSDNSHSNEMSPSTPICFSLPSMLFGDNDASGLCTLKTLSWLQDTHNRILGEL 430
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BLAST of mRNA_M-pyrifera_M_contig73815.17492.1 vs. uniprot
Match: A0A7S4MP95_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MP95_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 1.060e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:    4 EALCLTNGDVIARLPPHKRQAAEAVLEEFCRGFNLALPQIELLFQCQPNPFRTVDGKVDLSGTGRQEQAMDRSTPITFSLPSAIQGIVDAP---GLCTIKVVGLLQQTHNSVLEALRGSG 354
            E++ L N D+IA+LP  +++ A  +   F   FNL LP IELL++C  NPF   DG ++L     +   M   T + FSLPS + G        G+CTI+++ +L  + N VLEA+  SG
Sbjct:  539 ESIELKNKDIIAKLPAERQEEAREIFSRFAAIFNLILPTIELLYECNQNPF-IKDGAINLG----EPAEMCLETSVGFSLPSMVTGTDKGDFINGMCTIRILEILVDSQNEVLEAIEESG 653
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BLAST of mRNA_M-pyrifera_M_contig73815.17492.1 vs. uniprot
Match: A0A7S4MPJ1_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MPJ1_9EUKA)

HSP 1 Score: 81.6 bits (200), Expect = 1.170e-14
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:    4 EALCLTNGDVIARLPPHKRQAAEAVLEEFCRGFNLALPQIELLFQCQPNPFRTVDGKVDLSGTGRQEQAMDRSTPITFSLPSAIQGIVDAP---GLCTIKVVGLLQQTHNSVLEALRGSG 354
            E++ L N D+IA+LP  +++ A  +   F   FNL LP IELL++C  NPF   DG ++L     +   M   T + FSLPS + G        G+CTI+++ +L  + N VLEA+  SG
Sbjct: 3378 ESIELKNKDIIAKLPAERQEEAREIFSRFAAIFNLILPTIELLYECNQNPF-IKDGAINLG----EPAEMCLETSVGFSLPSMVTGTDKGDFINGMCTIRILEILVDSQNEVLEAIEESG 3492
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BLAST of mRNA_M-pyrifera_M_contig73815.17492.1 vs. uniprot
Match: A9V7V3_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V7V3_MONBE)

HSP 1 Score: 76.6 bits (187), Expect = 6.410e-13
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:   97 GFNLALPQIEL-LFQCQPNPFRTVDGKVDLSGTGRQEQAMDRSTPITFSLPSAIQGI-VDAPGLCTIKVVGLLQQTHNSVLEALR 345
             FN  LP +   +++C PNPF T DG+V+L GTG +E  M     + FSLP  + G   DA GLCT+++  +L Q HN V+ ALR
Sbjct: 5430 AFNATLPMLSPNIYECTPNPFLTADGRVNLKGTGDEENPMTPEVAVIFSLPVLLVGQETDARGLCTVQLCRMLVQAHNDVMTALR 5514
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73815.17492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2F533_9STRA1.080e-1838.93Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A812L3D3_SYMMI8.580e-1738.14RNF213 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S2DZL2_9STRA2.990e-1539.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4MP95_9EUKA1.060e-1438.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S4MPJ1_9EUKA1.170e-1438.33Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A9V7V3_MONBE6.410e-1344.71Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73815contigM-pyrifera_M_contig73815:9..731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score99.8
Seed ortholog evalue1.5e-18
Seed eggNOG ortholog946362.XP_004996693.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPases associated with a variety of cellular activities
EggNOG OGs39PN1@33154,KOG2177@1,KOG2177@2759
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Exons2
Model size555
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.8878279-CDS-M-pyrifera_M_contig73815:8..3781622816635.8878279-CDS-M-pyrifera_M_contig73815:8..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73815 9..378 +
1692278090.4628973-CDS-M-pyrifera_M_contig73815:8..3781692278090.4628973-CDS-M-pyrifera_M_contig73815:8..378Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73815 9..378 +
1622816635.900754-CDS-M-pyrifera_M_contig73815:546..7311622816635.900754-CDS-M-pyrifera_M_contig73815:546..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73815 547..731 +
1692278090.4751537-CDS-M-pyrifera_M_contig73815:546..7311692278090.4751537-CDS-M-pyrifera_M_contig73815:546..731Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73815 547..731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73815.17492.1prot_M-pyrifera_M_contig73815.17492.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73815 9..731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73815.17492.1

>prot_M-pyrifera_M_contig73815.17492.1 ID=prot_M-pyrifera_M_contig73815.17492.1|Name=mRNA_M-pyrifera_M_contig73815.17492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=185bp
EEALCLTNGDVIARLPPHKRQAAEAVLEEFCRGFNLALPQIELLFQCQPN
PFRTVDGKVDLSGTGRQEQAMDRSTPITFSLPSAIQGIVDAPGLCTIKVV
GLLQQTHNSVLEALRGSGAEVPQMGMGASSQTFDLAGLEAALQDRLLAGV
QPVAAHVRHFQFRGDMKQAGRLAGLRQILEQRSLP
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mRNA from alignment at M-pyrifera_M_contig73815:9..731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73815.17492.1 ID=mRNA_M-pyrifera_M_contig73815.17492.1|Name=mRNA_M-pyrifera_M_contig73815.17492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=723bp|location=Sequence derived from alignment at M-pyrifera_M_contig73815:9..731+ (Macrocystis pyrifera P11B4 male)
GAGGAGGCCCTCTGCCTCACCAACGGCGACGTGATCGCCCGCCTGCCCCC
ACACAAGCGCCAGGCGGCAGAGGCGGTGCTGGAGGAGTTCTGCAGGGGCT
TCAACCTCGCGCTGCCGCAGATCGAGCTCCTCTTCCAGTGCCAGCCCAAT
CCCTTCCGCACCGTCGACGGCAAGGTGGACCTGTCTGGCACTGGCCGCCA
GGAGCAGGCCATGGACCGCTCCACGCCCATCACTTTCTCGCTGCCCAGCG
CAATCCAGGGCATCGTGGACGCGCCCGGCCTCTGCACCATCAAGGTAGTA
GGGCTCCTCCAGCAGACGCACAACTCTGTGCTCGAGGCCCTGCGTGGCAG
CGGCGCTGAGGTGCCACAGAGTGGACTCAGGCGCGCAGGCGTGGCCGCAG
CCTCCCGCCAGGAGGACAGCGCAGAGCTGCCGTCGGTGAGCTACCTCACG
CCCCCTGCGGCGGTGCGGCAGCAGCTGGTCGTCTACTCGCGCGACCAGGA
CTTTCTGCCGCTGCTGCGCGCGTTCTCCACCCAGCCAGTGGGTATGGGGG
CCAGCAGCCAGACGTTCGACCTAGCAGGCCTTGAGGCCGCGCTGCAGGAC
CGTTTGCTGGCGGGCGTGCAGCCTGTGGCAGCCCACGTGCGCCACTTCCA
GTTCCGCGGCGACATGAAGCAGGCCGGCAGGCTGGCTGGCCTCAGGCAGA
TCCTCGAGCAGCGATCGTTGCCG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73815:9..731+

>mRNA_M-pyrifera_M_contig73815.17492.1 ID=mRNA_M-pyrifera_M_contig73815.17492.1|Name=mRNA_M-pyrifera_M_contig73815.17492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1110bp|location=Sequence derived from alignment at M-pyrifera_M_contig73815:9..731+ (Macrocystis pyrifera P11B4 male)
GAGGAGGCCCTCTGCCTCACCAACGGCGACGTGATCGCCCGCCTGCCCCC
ACACAAGCGCCAGGCGGCAGAGGCGGTGCTGGAGGAGTTCTGCAGGGGCT
TCAACCTCGCGCTGCCGCAGATCGAGCTCCTCTTCCAGTGCCAGCCCAAT
CCCTTCCGCACCGTCGACGGCAAGGTGGACCTGTCTGGCACTGGCCGCCA
GGAGCAGGCCATGGACCGCTCCACGCCCATCACTTTCTCGCTGCCCAGCG
CAATCCAGGGCATCGTGGACGCGCCCGGCCTCTGCACCATCAAGGTAGTA
GGGCTCCTCCAGCAGACGCACAACTCTGTGCTCGAGGCCCTGCGTGGCAG
CGGCGCTGAGGTGCCACAGAGAGGAGGCCCTCTGCCTCACCAACGGCGAC
GTGATCGCCCGCCTGCCCCCACACAAGCGCCAGGCGGCAGAGGCGGTGCT
GGAGGAGTTCTGCAGGGGCTTCAACCTCGCGCTGCCGCAGATCGAGCTCC
TCTTCCAGTGCCAGCCCAATCCCTTCCGCACCGTCGACGGCAAGGTGGAC
CTGTCTGGCACTGGCCGCCAGGAGCAGGCCATGGACCGCTCCACGCCCAT
CACTTTCTCGCTGCCCAGCGCAATCCAGGGCATCGTGGACGCGCCCGGCC
TCTGCACCATCAAGGTAGTAGGGCTCCTCCAGCAGACGCACAACTCTGTG
CTCGAGGCCCTGCGTGGCAGCGGCGCTGAGGTGCCACAGATGGGTATGGG
GGCCAGCAGCCAGACGTTCGACCTAGCAGGCCTTGAGGCCGCGCTGCAGG
ACCGTTTGCTGGCGGGCGTGCAGCCTGTGGCAGCCCACGTGCGCCACTTC
CAGTTCCGCGGCGACATGAAGCAGGCCGGCAGGCTGGCTGGCCTCAGGCA
GATCCTCGAGCAGCGATCGTTGCCGTGGGTATGGGGGCCAGCAGCCAGAC
GTTCGACCTAGCAGGCCTTGAGGCCGCGCTGCAGGACCGTTTGCTGGCGG
GCGTGCAGCCTGTGGCAGCCCACGTGCGCCACTTCCAGTTCCGCGGCGAC
ATGAAGCAGGCCGGCAGGCTGGCTGGCCTCAGGCAGATCCTCGAGCAGCG
ATCGTTGCCG
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