mRNA_M-pyrifera_M_contig7376.17479.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7376.17479.1
Unique NamemRNA_M-pyrifera_M_contig7376.17479.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.750e-25
Identity = 57/85 (67.06%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    7 REKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFSTTEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            R++W VCNQLGG RA AIA   R   MR VPWAGVAAR        DAG     RG AYCFLPLPV TGLPVHVNGYFELSSNR+
Sbjct:  326 RQRWLVCNQLGGKRANAIAADPRHELMRFVPWAGVAARVKE-----DAGAAAVRRGRAYCFLPLPVFTGLPVHVNGYFELSSNRR 405          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A7S0C3V6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3V6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.650e-22
Identity = 48/86 (55.81%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 IREKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFSTTEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            + EKW VCNQ G    + ++ S   +HM LVPWAGVAA+  T              GAAYCFLPLPV TGLPVHVNGYFELSS+R+
Sbjct:   31 VTEKWIVCNQYGRGNVSRMSSSADHSHMELVPWAGVAAQLPTDTA---------TTGAAYCFLPLPVATGLPVHVNGYFELSSDRR 107          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A7S1TYE3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYE3_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.050e-22
Identity = 56/101 (55.45%), Postives = 60/101 (59.41%), Query Frame = 1
Query:    1 AIREKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFST--------------TEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            AIREKW VCNQ GG RA  +A      HM+LVPWAGVAAR                   +G DA       G AYCFLPLPV TG PVHVNGYFELSSNR+
Sbjct:  315 AIREKWVVCNQFGGGRAAQMAADTSLEHMKLVPWAGVAARVGMHLPERGAAPWVAQWVPDGADAVAAP---GRAYCFLPLPVRTGFPVHVNGYFELSSNRR 412          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A7S3QAL4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAL4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.450e-21
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    7 REKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFST--TEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            +E+W VCNQLGG  A+ +A  +   HM+LVPWAGVAAR S     EGG+A          YCFLPLPV T LP+HVNGYFELSSNR+
Sbjct:  318 KERWMVCNQLGGGNASIMARDKALDHMKLVPWAGVAARLSPDCNVEGGNA----------YCFLPLPVRTKLPIHVNGYFELSSNRR 394          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A7S2UB77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UB77_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.060e-20
Identity = 48/85 (56.47%), Postives = 57/85 (67.06%), Query Frame = 1
Query:    7 REKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFSTTEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            +E+W VCNQLGG  A+ +A     +HM+L+PWAGVAAR S   +           GAAYCFLPLP  T LP HVNGYFELSSNR+
Sbjct:  330 KERWIVCNQLGGGNASRMAQDPGLSHMKLIPWAGVAARLSPLVDDTSF------EGAAYCFLPLPAKTKLPCHVNGYFELSSNRR 408          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A7S4HJR0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HJR0_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.490e-20
Identity = 59/126 (46.83%), Postives = 67/126 (53.17%), Query Frame = 1
Query:   10 EKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARF------------------STTEEGGDA------------------------GGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            E W VCNQLGG RA+ +A  + A H+RLVPWAGVAAR                   +T +EG DA                         GP    GAAYCFLPLPV TGLP+HVNGYFELSSNR+
Sbjct:  357 ETWMVCNQLGGGRASNMASDKAAEHLRLVPWAGVAARLDPPPVPCAEGDGGEADGGATMDEGMDAVEVVDGDGVIDDTQTEAGTGAASATGPSS-GGAAYCFLPLPVSTGLPIHVNGYFELSSNRR 481          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: C1N0V2_MICPC (Predicted protein n=4 Tax=Micromonas pusilla TaxID=38833 RepID=C1N0V2_MICPC)

HSP 1 Score: 93.2 bits (230), Expect = 3.260e-20
Identity = 48/85 (56.47%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    7 REKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFSTTEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            +E+W V + L G RA A+A+SE      LVPW GVAAR    E   DA   +   G A+CFLPLPV TGLPVHVN YFELSSNR+
Sbjct: 1805 KERWMVSSSLAGGRARALALSEAGVTRGLVPWVGVAARVPHPETSDDATSSETVDGRAFCFLPLPVKTGLPVHVNAYFELSSNRR 1889          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A7S0CTG0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CTG0_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 4.800e-20
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 IREKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFSTTEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            + EK+ +   LGG RA A+A+   A   +L+PWAG+AAR    E  G   GP    G+A+CFLPLPV TGLPVHVNGYFELS+NR+
Sbjct:   49 VSEKYLLFEMLGGDRARAMAVENSAKGHKLLPWAGIAARI---ERKGPEPGPTDIEGSAFCFLPLPVRTGLPVHVNGYFELSANRR 131          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A7S1GSX3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GSX3_HEMAN)

HSP 1 Score: 90.9 bits (224), Expect = 1.950e-19
Identity = 49/88 (55.68%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   13 KWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFST-----TEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            +W V + +G  RA  IA+  + AH+RLVPWAGVAA  S       EEGG        +G A+CFLPLP  TGLPVHVNGYFELSSNR+
Sbjct:  435 RWAVSSAIGTGRAKEIAVHAKTAHLRLVPWAGVAAILSRECRTGNEEGGMV------KGRAFCFLPLPAETGLPVHVNGYFELSSNRR 516          
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Match: A0A5D6XM38_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM38_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.110e-19
Identity = 46/84 (54.76%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   10 EKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFSTTEEGGDAGGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ 261
            EK+ VCNQLGG RA  IA +     ++L+PWAG+A R           G  P  G A+CFLPLPV  GLPVH+NGYFELSSNR+
Sbjct: 1827 EKYLVCNQLGGGRAREIACAAENESLKLIPWAGIAGRI----------GVAPAEGRAFCFLPLPVKVGLPVHINGYFELSSNRR 1900          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7376.17479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YL62_9STRA1.750e-2567.06RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0C3V6_9STRA2.650e-2255.81Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1TYE3_9STRA3.050e-2255.45Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3QAL4_9STRA1.450e-2158.62Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2UB77_9STRA1.060e-2056.47Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S4HJR0_9STRA1.490e-2046.83Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
C1N0V2_MICPC3.260e-2056.47Predicted protein n=4 Tax=Micromonas pusilla TaxID... [more]
A0A7S0CTG0_9EUKA4.800e-2054.65Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S1GSX3_HEMAN1.950e-1955.68Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A5D6XM38_9STRA2.110e-1954.76Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7376contigM-pyrifera_M_contig7376:512..772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.1
Seed ortholog evalue1.7e-17
Seed eggNOG ortholog38833.XP_003061457.1
KEGG koko:K17592
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
EggNOG free text desc.negative regulation of inclusion body assembly
EggNOG OGs28IDA@1,2QQPY@2759,34JJ3@3041,37MBW@33090
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.109045-CDS-M-pyrifera_M_contig7376:511..7721622816635.109045-CDS-M-pyrifera_M_contig7376:511..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7376 512..772 -
1692278090.073479-CDS-M-pyrifera_M_contig7376:511..7721692278090.073479-CDS-M-pyrifera_M_contig7376:511..772Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7376 512..772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7376.17479.1prot_M-pyrifera_M_contig7376.17479.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7376 512..772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7376.17479.1

>prot_M-pyrifera_M_contig7376.17479.1 ID=prot_M-pyrifera_M_contig7376.17479.1|Name=mRNA_M-pyrifera_M_contig7376.17479.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=87bp
AIREKWQVCNQLGGPRATAIAISERAAHMRLVPWAGVAARFSTTEEGGDA
GGPKPPRGAAYCFLPLPVVTGLPVHVNGYFELSSNRQ
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mRNA from alignment at M-pyrifera_M_contig7376:512..772-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7376.17479.1 ID=mRNA_M-pyrifera_M_contig7376.17479.1|Name=mRNA_M-pyrifera_M_contig7376.17479.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=261bp|location=Sequence derived from alignment at M-pyrifera_M_contig7376:512..772- (Macrocystis pyrifera P11B4 male)
GCGATACGCGAGAAGTGGCAGGTGTGCAACCAGCTTGGCGGGCCTCGTGC TACTGCGATCGCCATCTCTGAGAGAGCCGCCCATATGCGCCTGGTTCCAT GGGCCGGTGTTGCCGCGAGGTTTTCCACGACAGAGGAAGGCGGGGATGCG GGAGGCCCCAAGCCCCCCCGGGGCGCGGCGTACTGCTTCCTCCCCCTGCC GGTCGTGACGGGGCTGCCGGTTCACGTGAACGGTTACTTCGAGTTGTCGT CGAACAGGCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7376:512..772-

>mRNA_M-pyrifera_M_contig7376.17479.1 ID=mRNA_M-pyrifera_M_contig7376.17479.1|Name=mRNA_M-pyrifera_M_contig7376.17479.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=522bp|location=Sequence derived from alignment at M-pyrifera_M_contig7376:512..772- (Macrocystis pyrifera P11B4 male)
GCGATACGCGAGAAGTGGCAGGTGTGCAACCAGCTTGGCGGGCCTCGTGC
TACTGCGATCGCCATCTCTGAGAGAGCCGCCCATATGCGCCTGGTTCCAT
GGGCCGGTGTTGCCGCGAGGTTTTCCACGACAGAGGAAGGCGGGGATGCG
GGAGGCCCCAAGCCCCCCCGGGGCGCGGCGTACTGCTTCCTCCCCCTGCC
GGTCGTGACGGGGCTGCCGGTTCACGTGAACGGTTACTTCGAGTTGTCGT
CGAACAGGCAAGCGATACGCGAGAAGTGGCAGGTGTGCAACCAGCTTGGC
GGGCCTCGTGCTACTGCGATCGCCATCTCTGAGAGAGCCGCCCATATGCG
CCTGGTTCCATGGGCCGGTGTTGCCGCGAGGTTTTCCACGACAGAGGAAG
GCGGGGATGCGGGAGGCCCCAAGCCCCCCCGGGGCGCGGCGTACTGCTTC
CTCCCCCTGCCGGTCGTGACGGGGCTGCCGGTTCACGTGAACGGTTACTT
CGAGTTGTCGTCGAACAGGCAA
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