mRNA_M-pyrifera_M_contig73756.17478.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73756.17478.1
Unique NamemRNA_M-pyrifera_M_contig73756.17478.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: E0VNS2_PEDHC (Ankyrin repeat-containing protein, putative n=1 Tax=Pediculus humanus subsp. corporis TaxID=121224 RepID=E0VNS2_PEDHC)

HSP 1 Score: 55.8 bits (133), Expect = 7.190e-7
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   67 LVRDAVAAGASIDDQTISKSKETPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALL 288
            LV+  +  GA ++ QT SK K TPLM+AVQ QRL+VV+ L+  G K+ ++D   ++ LH+A ++ N  ++  LL
Sbjct:  771 LVKGFIKNGAGLNVQTSSK-KWTPLMLAVQNQRLDVVKELLNTGCKIDVQDYKLNTALHYACRTGNSKLVKILL 843          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A2H2Z714_TRIPA (Uncharacterized protein n=1 Tax=Trichoderma parareesei TaxID=858221 RepID=A0A2H2Z714_TRIPA)

HSP 1 Score: 53.9 bits (128), Expect = 3.340e-6
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 1
Query:   91 GASIDDQTISKSKETPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGAD 303
            GA ID   + +  ETPL VA+Q+ +   +RLL+  GA L LRDE G ++LH A +  N  I + LL   AD
Sbjct:  535 GAPIDG--VGRPFETPLFVALQKHKESTMRLLVNRGANLELRDERGRTLLHWAMEERNTAIAMLLLGLEAD 603          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A813WTN5_9BILA (RING-type E3 ubiquitin transferase n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813WTN5_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 3.370e-6
Identity = 26/62 (41.94%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  118 SKSKETPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGAD 303
            +K  ++ L +AV +Q ++ V++LI++GA L+L+D NGD+ LH +  + N+ I+I LL+A AD
Sbjct:  655 NKKFQSALHIAVCKQHVDSVKILIELGANLNLQDCNGDTPLHDSILTQNDNILILLLNANAD 716          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A150VEW7_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Acidomyces richmondensis BFW TaxID=766039 RepID=A0A150VEW7_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 4.480e-6
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1
Query:  100 IDDQTISKSKETPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGA 300
            IDD+T      T +M A + +R E  R+L+Q GA++HL+D NGDS LH AA   +  I   LLD GA
Sbjct:  445 IDDRT----GRTLIMEASRLRRFEACRVLLQSGARVHLKDSNGDSCLHLAASEGDAEITQILLDFGA 507          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A4U0TTT7_9PEZI (Uncharacterized protein n=1 Tax=Salinomyces thailandica TaxID=706561 RepID=A0A4U0TTT7_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 6.410e-6
Identity = 27/61 (44.26%), Postives = 39/61 (63.93%), Query Frame = 1
Query:  118 SKSKETPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGA 300
            S++  T +M A++ +     RLL+Q GA+LHLRD NG + LHHAA   +  I   +LD+GA
Sbjct:  512 SRTGRTAVMEAIRGRAWPATRLLMQNGARLHLRDVNGHTALHHAAIEGDAAICQQMLDSGA 572          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A7M7T727_NASVI (Uncharacterized protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7T727_NASVI)

HSP 1 Score: 51.2 bits (121), Expect = 7.080e-6
Identity = 26/68 (38.24%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  100 IDDQTISKSKETPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGAD 303
            ID  +I+ S ETPLM+A +  +LE+V+LLI+ GA +  +  +G + LH +  S N  ++  L+D   D
Sbjct:   70 IDPNSINYSGETPLMLAAESNQLEIVKLLIEYGANVLCKRNDGRTALHFSVPSNNPAMLNLLIDQDKD 137          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A433QZ12_9FUNG (Ankyrin repeat-containing domain protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QZ12_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 1.160e-5
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  133 TPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGA 300
            TPL+ AV+++ L+VVRLL++ GA ++++D  G   +H+   S N  I+ AL+DAGA
Sbjct:  470 TPLIEAVKKKNLDVVRLLLKAGANVNVKDARGVWAIHYGTNSQNAHIVEALVDAGA 525          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A433DME2_9FUNG (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DME2_9FUNG)

HSP 1 Score: 52.4 bits (124), Expect = 1.230e-5
Identity = 25/56 (44.64%), Postives = 40/56 (71.43%), Query Frame = 1
Query:  133 TPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGA 300
            TPL+ AV+++ L+VVRLL++ GA ++++D  G   +H+   S N  I+ AL+DAGA
Sbjct: 1614 TPLIEAVKKKNLDVVRLLLKAGANVNVKDARGVWAIHYGTNSQNAHIVEALVDAGA 1669          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A7S4I512_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I512_9EUKA)

HSP 1 Score: 49.3 bits (116), Expect = 2.270e-5
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  133 TPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGAD 303
            TPL +A +R++L+VV LLI+  A ++ +   G++ LH A  + NE +I +L+ AGAD
Sbjct:    7 TPLHLAAEREKLDVVDLLIKSRAMVNAQSHQGNTPLHRAMTTGNEPLIYSLITAGAD 63          
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Match: A0A495KQF0_9FLAO (Ankyrin repeat protein n=1 Tax=Flavobacterium sp. 102 TaxID=2135623 RepID=A0A495KQF0_9FLAO)

HSP 1 Score: 49.3 bits (116), Expect = 2.970e-5
Identity = 28/77 (36.36%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   52 RGDAALVRDAVAAGASIDDQTISKSKETPLMVAVQRQRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKS-ANETIII 279
            +GD A+V+  +  G+ +++   S +  TPLM+A +  ++E+++LL++ GAKL  +DE G + L +A  S ANE I +
Sbjct:   47 KGDLAIVKKFIEYGSDVNE---SMNGTTPLMLAARYNKVEIIKLLLENGAKLDTKDERGYTALKYAEFSNANEAIAL 120          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73756.17478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
E0VNS2_PEDHC7.190e-741.89Ankyrin repeat-containing protein, putative n=1 Ta... [more]
A0A2H2Z714_TRIPA3.340e-643.66Uncharacterized protein n=1 Tax=Trichoderma parare... [more]
A0A813WTN5_9BILA3.370e-641.94RING-type E3 ubiquitin transferase n=1 Tax=Brachio... [more]
A0A150VEW7_9PEZI4.480e-646.27Uncharacterized protein (Fragment) n=1 Tax=Acidomy... [more]
A0A4U0TTT7_9PEZI6.410e-644.26Uncharacterized protein n=1 Tax=Salinomyces thaila... [more]
A0A7M7T727_NASVI7.080e-638.24Uncharacterized protein n=1 Tax=Nasonia vitripenni... [more]
A0A433QZ12_9FUNG1.160e-544.64Ankyrin repeat-containing domain protein n=1 Tax=J... [more]
A0A433DME2_9FUNG1.230e-544.64Ankyrin repeat-containing domain protein (Fragment... [more]
A0A7S4I512_9EUKA2.270e-542.11Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
A0A495KQF0_9FLAO2.970e-536.36Ankyrin repeat protein n=1 Tax=Flavobacterium sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73756contigM-pyrifera_M_contig73756:537..839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-18_002230.1
Exons1
Model size303
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.0610392-CDS-M-pyrifera_M_contig73756:536..8301622816635.0610392-CDS-M-pyrifera_M_contig73756:536..830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73756 537..830 -
1692278090.0475476-CDS-M-pyrifera_M_contig73756:536..8301692278090.0475476-CDS-M-pyrifera_M_contig73756:536..830Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73756 537..830 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816635.0771692-UTR-M-pyrifera_M_contig73756:830..8391622816635.0771692-UTR-M-pyrifera_M_contig73756:830..839Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73756 831..839 -
1692278090.060548-UTR-M-pyrifera_M_contig73756:830..8391692278090.060548-UTR-M-pyrifera_M_contig73756:830..839Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73756 831..839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73756.17478.1prot_M-pyrifera_M_contig73756.17478.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73756 537..830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73756.17478.1

>prot_M-pyrifera_M_contig73756.17478.1 ID=prot_M-pyrifera_M_contig73756.17478.1|Name=mRNA_M-pyrifera_M_contig73756.17478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MGNSPSAKLVSGASRGDAALVRDAVAAGASIDDQTISKSKETPLMVAVQR
QRLEVVRLLIQMGAKLHLRDENGDSVLHHAAKSANETIIIALLDAGAD
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mRNA from alignment at M-pyrifera_M_contig73756:537..839-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73756.17478.1 ID=mRNA_M-pyrifera_M_contig73756.17478.1|Name=mRNA_M-pyrifera_M_contig73756.17478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=303bp|location=Sequence derived from alignment at M-pyrifera_M_contig73756:537..839- (Macrocystis pyrifera P11B4 male)
GTATTGTTCATGGGAAATTCTCCTTCTGCAAAGCTTGTTTCTGGTGCAAG CCGTGGAGACGCGGCACTCGTACGTGATGCGGTGGCAGCTGGCGCGAGCA TTGACGACCAGACGATCTCCAAGAGCAAAGAAACGCCCCTCATGGTCGCT GTACAGCGACAACGTCTAGAAGTGGTGCGCCTCTTGATTCAAATGGGGGC TAAATTGCATTTGAGGGATGAAAATGGAGACTCAGTGCTCCACCATGCAG CGAAATCGGCCAACGAAACCATCATCATCGCTTTGCTGGACGCTGGAGCA GAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73756:537..839-

>mRNA_M-pyrifera_M_contig73756.17478.1 ID=mRNA_M-pyrifera_M_contig73756.17478.1|Name=mRNA_M-pyrifera_M_contig73756.17478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig73756:537..839- (Macrocystis pyrifera P11B4 male)
ATGGGAAATTCTCCTTCTGCAAAGCTTGTTTCTGGTGCAAGCCGTGGAGA
CGCGGCACTCGTACGTGATGCGGTGGCAGCTGGCGCGAGCATTGACGACC
AGACGATCTCCAAGAGCAAAGAAACGCCCCTCATGGTCGCTGTACAGCGA
CAACGTCTAGAAGTGGTGCGCCTCTTGATTCAAATGGGGGCTAAATTGCA
TTTGAGGGATGAAAATGGAGACTCAGTGCTCCACCATGCAGCGAAATCGG
CCAACGAAACCATCATCATCGCTTTGCTGGACGCTGGAGCAGATATGGGA
AATTCTCCTTCTGCAAAGCTTGTTTCTGGTGCAAGCCGTGGAGACGCGGC
ACTCGTACGTGATGCGGTGGCAGCTGGCGCGAGCATTGACGACCAGACGA
TCTCCAAGAGCAAAGAAACGCCCCTCATGGTCGCTGTACAGCGACAACGT
CTAGAAGTGGTGCGCCTCTTGATTCAAATGGGGGCTAAATTGCATTTGAG
GGATGAAAATGGAGACTCAGTGCTCCACCATGCAGCGAAATCGGCCAACG
AAACCATCATCATCGCTTTGCTGGACGCTGGAGCAGAT
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