mRNA_M-pyrifera_M_contig73628.17449.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73628.17449.1
Unique NamemRNA_M-pyrifera_M_contig73628.17449.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: A0A5A8EBD2_CAFRO (Uncharacterized protein n=6 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EBD2_CAFRO)

HSP 1 Score: 181 bits (458), Expect = 7.560e-48
Identity = 118/279 (42.29%), Postives = 162/279 (58.06%), Query Frame = 1
Query:    4 LYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSG--RAAGQISYRDMSLTSVDAR-HSPAATNAVV--CGTDLHASRRSSLRVISFPDTEPGSMAITSGKVGGGMAALSRRGESPSTVSAVDLGSTVLSSIAVLPSALGLIASTKTPYSQGSILLTPWPIEEGDDVSVAWETVVSHQGPVTSITCTPDSRAVVSGGADGSI 825
            +YS +LHP+G  LL+GFES LQL +LLMED+RPVKD PIR+C  + F+NGG LFAA NGA I V+ + T A V  L+GHTD V +L+WS DD+FL+S   D  V RW VR+   R   ++  RD+ +TS+ A  +   AT A+V   G ++     S +  I+FP  E      TS         L+  G     VSAV  G++V+++ + LP   G + S   P+  G +  T   I+E          VV H GPVT++  TPD+R VV+GG DGS+
Sbjct:  754 IYSASLHPSGLHLLVGFESGLQLMNLLMEDIRPVKDVPIRRCAALGFSNGGSLFAAANGANISVFSTYTTALVAKLQGHTDNVTALAWSPDDQFLISASADFTVRRWAVRANARREHNKVVLRDVVVTSLSAAMNGHDATGALVFAVGRNMRTPTESPVLGIAFPAAEGTGSVRTS---------LNMSGTQHKLVSAVAGGASVVTATS-LPGHKGTLRSLSAPFPAGEV--TAPTIQE----------VVCHSGPVTAMCVTPDARLVVTGGDDGSL 1010          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: A0A5A8E612_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E612_CAFRO)

HSP 1 Score: 147 bits (370), Expect = 1.780e-38
Identity = 101/252 (40.08%), Postives = 140/252 (55.56%), Query Frame = 1
Query:   85 MEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSG--RAAGQISYRDMSLTSVDAR-HSPAATNAVV--CGTDLHASRRSSLRVISFPDTEPGSMAITSGKVGGGMAALSRRGESPSTVSAVDLGSTVLSSIAVLPSALGLIASTKTPYSQGSILLTPWPIEEGDDVSVAWETVVSHQGPVTSITCTPDSRAVVSGGADGSI 825
            MED+RPVKD PIR+C  + F+NGG LFAA NGA I V+ + T A V  L+GHTD V +L+WS DD+FL+S   D  V RW VR+   R   ++  RD+ +TS+ A  +   AT A+V   G ++     S +  I+FP  E      TS         L+  G     VSAV  G++V+++ + LP   G + S   P+  G +  T   I+E          VV H GPVT++  TPD+R VV+GG DGS+
Sbjct:    1 MEDIRPVKDVPIRRCAALGFSNGGSLFAAANGANISVFSTYTTALVAKLQGHTDNVTALAWSPDDQFLISASADFTVRRWAVRANARREHNKVVLRDVVVTSLSAAMNGHDATGALVFAVGRNMRTPTESPVLGIAFPAAEGTGSVRTS---------LNMSGTQHKLVSAVAGGASVVTATS-LPGHKGTLRSLSAPFPAGEV--TAPTIQE----------VVCHSGPVTAMCVTPDARLVVTGGDDGSL 230          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: F2U8Y7_SALR5 (WD repeat-containing protein 65 n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8Y7_SALR5)

HSP 1 Score: 129 bits (325), Expect = 3.780e-30
Identity = 91/279 (32.62%), Postives = 136/279 (48.75%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSVDARHSPAATNAVVCGTDLHASRRSSLRVISFPDTEPGSMAITSGKVGGGMAALSRRGESPSTVSAVDLGSTVLSSIAVLPSALGLIASTKTPYSQGSILLTPWPIEEGDDVSVAWETVVSHQGPVTSITCTPDSRAVVSGGADGSIHIYR 837
            + +S+A+HP+G  +L+GF   L+L SLLM+D+  +K+F IR+C   RF+NGGHLFAA  G  I +Y + T   V +L+GH+ R+ S++WS DD  +VS G DG V  W     R   +   +  S T         A  AV  G+D        L+ I   D E                      E P  VSA      VL+ + V  S   L+A+T    +QGS+     P+E    +   W +  +H G VT +  +PD + + S G DG + +++
Sbjct:  378 EAHSIAIHPSGLFVLVGFGDKLRLMSLLMDDMHTIKEFSIRECKECRFSNGGHLFAAAQGNVIQIYSTWTFKPVGSLKGHSGRIRSITWSPDDTRIVSTGADGAVYEWSTLERRRINECVQKTCSYTGATLDPETGAIYAV--GSDKM------LKRIHNSDMEL---------------------EVP--VSARATSDLVLTQVIVSSSGKMLLAAT----AQGSVRSYKVPLE----LKAEWTSTCTHFGGVTRLRISPDDQTLFSVGEDGCLFLHK 617          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: UPI001402C9AA (cilia- and flagella-associated protein 57 isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001402C9AA)

HSP 1 Score: 129 bits (324), Expect = 5.190e-30
Identity = 61/129 (47.29%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSV 387
            + +SVALHP+G  +L+GF   L+L +LL+ DVRP++DFP+R C    F+NGGHLFAA NG  + V+ S+T   V  L+GH+ +V  L+WS DD  LVSCG DG V  W   SGR   +   +  + T V
Sbjct:  471 EAHSVALHPSGLQVLVGFSDKLRLLTLLLHDVRPLRDFPVRACKECCFSNGGHLFAAANGNVVQVFSSITFENVANLKGHSGKVRGLAWSVDDARLVSCGLDGAVYEWSPLSGRRDAECVVKACAYTGV 599          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: A0A267FYC9_9PLAT (Uncharacterized protein (Fragment) n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FYC9_9PLAT)

HSP 1 Score: 129 bits (323), Expect = 6.700e-30
Identity = 88/282 (31.21%), Postives = 131/282 (46.45%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSVDARHSPAATNAVVCGTDLHASRRSSLRVISFPDTEPGSMAITSGKVGGGMAALSRRGESPSTVSAVDLGSTVLSSIAVLPSALGLIASTKTPYSQGSILLTPWPIEE---GDDVSVAWETVVSHQGPVTSITCTPDSRAVVSGGADGSIHIYR 837
            + YSVALHP+G  LL+GF   L+L +LL++D+R  K+F IR C    F+NGGHLFAA +G  I ++ +++   V   +GH  ++  L WS DD  LVSCG DG V  W V +G+   +   +  S T V A      T AV  G+D         ++    D EP                          + A+D G    +S+A+  S   + A TK+    GS+    +P      G      W+ V +H G V  +        +V+ G DG + I++
Sbjct:  415 EAYSVALHPSGLFLLVGFSDKLRLMNLLIDDIRTFKEFTIRGCRECAFSNGGHLFAAVHGNIIQIFSTISFENVGNFKGHNGKIKGLVWSNDDSKLVSCGMDGAVYEWEVATGKRLREHVLKTCSYTGVAATADVKTTYAV--GSDG--------KLKEITDEEP--------------------------MPAIDAGEAEFTSLAMSNSGRMMFAGTKS----GSVRAIKFPFTAASVGGGAGSDWQEVAAHSGGVNKMRLVCTDEYMVTVGDDGCVLIWK 656          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: A0A1I8GFC8_9PLAT (Uncharacterized protein n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GFC8_9PLAT)

HSP 1 Score: 129 bits (323), Expect = 6.940e-30
Identity = 88/282 (31.21%), Postives = 131/282 (46.45%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSVDARHSPAATNAVVCGTDLHASRRSSLRVISFPDTEPGSMAITSGKVGGGMAALSRRGESPSTVSAVDLGSTVLSSIAVLPSALGLIASTKTPYSQGSILLTPWPIEE---GDDVSVAWETVVSHQGPVTSITCTPDSRAVVSGGADGSIHIYR 837
            + YSVALHP+G  LL+GF   L+L +LL++D+R  K+F IR C    F+NGGHLFAA +G  I ++ +++   V   +GH  ++  L WS DD  LVSCG DG V  W V +G+   +   +  S T V A      T AV  G+D         ++    D EP                          + A+D G    +S+A+  S   + A TK+    GS+    +P      G      W+ V +H G V  +        +V+ G DG + I++
Sbjct:  407 EAYSVALHPSGLFLLVGFSDKLRLMNLLIDDIRTFKEFTIRGCRECAFSNGGHLFAAVHGNIIQIFSTISFENVGNFKGHNGKIKGLVWSNDDSKLVSCGMDGAVYEWEVATGKRLREHVLKTCSYTGVAATADVKTTYAV--GSDG--------KLKEITDEEP--------------------------MPAIDAGEAEFTSLAMSNSGRMMFAGTKS----GSVRAIKFPFTAASVGGGAGSDWQEVAAHSGGVNKMRLVCTDEYMVTVGDDGCVLIWK 648          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: A0A7M7PIU5_STRPU (Uncharacterized protein n=3 Tax=Echinacea TaxID=7674 RepID=A0A7M7PIU5_STRPU)

HSP 1 Score: 127 bits (319), Expect = 2.370e-29
Identity = 61/141 (43.26%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSVDARHSPAATNAV 423
            + YS+ALHP+G  +L+GF   L+L +LL++D++  K+FPIR C    F+NGGHLFAA +G  I +Y S T   V+ L+GH  +V S+ WS DD  ++SCG DG V  W+  SG+  G+   +  S T V +      T AV
Sbjct:  410 EAYSIALHPSGLYILVGFSDKLRLMNLLIDDIKKFKEFPIRGCRECSFSNGGHLFAAVHGNVIQIYSSTTFENVSNLKGHNGKVRSVIWSSDDSKIISCGMDGAVYEWNAFSGKREGESVLKSCSYTCVTSSPDGKVTFAV 550          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: A0A3B4CKV7_PYGNA (Cilia and flagella associated protein 57 n=3 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4CKV7_PYGNA)

HSP 1 Score: 127 bits (318), Expect = 3.220e-29
Identity = 56/129 (43.41%), Postives = 83/129 (64.34%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSV 387
            +LYSVALHP+G  +++GF   ++L +LL +D+R  K+F +R C    F++GGH+FAA NG  IH+Y + T  ++  L+GH  +V S++WS DD  LVSCG DG V  W+  SG+   +   +  S T V
Sbjct:  408 ELYSVALHPSGLFIVVGFSDKIRLMNLLTDDIRTFKEFTVRGCRECAFSHGGHMFAAVNGNVIHIYSTTTFNSILNLKGHNGKVRSIAWSADDSHLVSCGMDGAVYEWNTLSGKRESESVLKSCSYTGV 536          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: D0NG71_PHYIT (WD domain-containing protein, putative n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NG71_PHYIT)

HSP 1 Score: 127 bits (318), Expect = 3.260e-29
Identity = 62/146 (42.47%), Postives = 89/146 (60.96%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSVDARHSPAATNAVVCGTD 438
            D   VA HP+G  + +GF   L+L ++LM+D+R  ++F I+ C  VRF+NGG  FAA N   +HVY + TG  V+ LRGH++RV ++SW   DR L++CG DG V+ W +RS   AG   +     + +DA  SP    A V G+D
Sbjct:  400 DALCVAFHPSGLHVAVGFTDKLRLLNVLMDDIRSCREFTIKGCREVRFSNGGQFFAAANNNVVHVYATYTGELVSVLRGHSNRVTAISWKSGDRKLLTCGADGTVLLWSLRSASKAGD-GHSQARCSYIDAALSPEGDVAYVTGSD 544          
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Match: A0A667XCB5_9TELE (Cilia and flagella associated protein 57 n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XCB5_9TELE)

HSP 1 Score: 126 bits (317), Expect = 4.320e-29
Identity = 63/146 (43.15%), Postives = 87/146 (59.59%), Query Frame = 1
Query:    1 DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFANGGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCGRDGLVVRWHVRSGRAAGQISYRDMSLTSVDARHSPAATNAVVCGTD 438
            + YSVALHP+G  +L+GF   L++ +LL++D+R + +F +R C    F++GGHLFAA NG  IH+Y   T   V  L+GH  +V S+ WS DD  LVSCG DG V  W+  +GR   +   +  + T  D   SP A   V  GTD
Sbjct:  394 EAYSVALHPSGLFILVGFTDKLRMMNLLIDDIRTINEFSVRGCRECAFSHGGHLFAAVNGNVIHIYSVTTFENVLNLKGHRGKVQSVRWSLDDSRLVSCGMDGAVYEWNTHTGRRESECVLKSCNYT--DVAFSPDARAVVAVGTD 537          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73628.17449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EBD2_CAFRO7.560e-4842.29Uncharacterized protein n=6 Tax=Cafeteria roenberg... [more]
A0A5A8E612_CAFRO1.780e-3840.08Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
F2U8Y7_SALR53.780e-3032.62WD repeat-containing protein 65 n=1 Tax=Salpingoec... [more]
UPI001402C9AA5.190e-3047.29cilia- and flagella-associated protein 57 isoform ... [more]
A0A267FYC9_9PLAT6.700e-3031.21Uncharacterized protein (Fragment) n=1 Tax=Macrost... [more]
A0A1I8GFC8_9PLAT6.940e-3031.21Uncharacterized protein n=5 Tax=Macrostomum lignan... [more]
A0A7M7PIU5_STRPU2.370e-2943.26Uncharacterized protein n=3 Tax=Echinacea TaxID=76... [more]
A0A3B4CKV7_PYGNA3.220e-2943.41Cilia and flagella associated protein 57 n=3 Tax=S... [more]
D0NG71_PHYIT3.260e-2942.47WD domain-containing protein, putative n=3 Tax=Phy... [more]
A0A667XCB5_9TELE4.320e-2943.15Cilia and flagella associated protein 57 n=2 Tax=M... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73628contigM-pyrifera_M_contig73628:118..954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score132.9
Seed ortholog evalue2.3e-28
Seed eggNOG ortholog244447.XP_008319183.1
Preferred nameWDR65
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0007600,GO:0007605,GO:0008150,GO:0032501,GO:0050877,GO:0050954
EggNOG free text desc.WD repeat domain 65
EggNOG OGs28M22@1,2QTIS@2759,38GCM@33154,3BD30@33208,3CXZA@33213,48B26@7711,4988F@7742,4A00T@7898
COG Functional cat.S
Best tax levelActinopterygii
Best eggNOG OGNA|NA|NA
Exons1
Model size837
Cds size837
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816633.5471542-CDS-M-pyrifera_M_contig73628:117..9541622816633.5471542-CDS-M-pyrifera_M_contig73628:117..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73628 118..954 +
1692278089.2203863-CDS-M-pyrifera_M_contig73628:117..9541692278089.2203863-CDS-M-pyrifera_M_contig73628:117..954Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73628 118..954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73628.17449.1prot_M-pyrifera_M_contig73628.17449.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73628 118..954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73628.17449.1

>prot_M-pyrifera_M_contig73628.17449.1 ID=prot_M-pyrifera_M_contig73628.17449.1|Name=mRNA_M-pyrifera_M_contig73628.17449.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=279bp
DLYSVALHPTGSTLLIGFESSLQLASLLMEDVRPVKDFPIRKCTTVRFAN
GGHLFAAGNGAAIHVYESLTGAAVTTLRGHTDRVLSLSWSGDDRFLVSCG
RDGLVVRWHVRSGRAAGQISYRDMSLTSVDARHSPAATNAVVCGTDLHAS
RRSSLRVISFPDTEPGSMAITSGKVGGGMAALSRRGESPSTVSAVDLGST
VLSSIAVLPSALGLIASTKTPYSQGSILLTPWPIEEGDDVSVAWETVVSH
QGPVTSITCTPDSRAVVSGGADGSIHIYR
back to top

mRNA from alignment at M-pyrifera_M_contig73628:118..954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73628.17449.1 ID=mRNA_M-pyrifera_M_contig73628.17449.1|Name=mRNA_M-pyrifera_M_contig73628.17449.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=837bp|location=Sequence derived from alignment at M-pyrifera_M_contig73628:118..954+ (Macrocystis pyrifera P11B4 male)
GATTTGTATTCTGTAGCGCTTCATCCAACTGGATCAACACTCTTGATTGG ATTTGAGTCTTCTTTGCAGCTTGCTTCCTTGTTGATGGAAGATGTACGTC CTGTCAAAGATTTTCCAATTCGAAAGTGTACTACAGTACGCTTTGCCAAT GGTGGACATTTGTTTGCTGCTGGAAATGGAGCTGCAATTCATGTCTATGA ATCATTGACAGGTGCAGCTGTGACAACCCTTCGAGGACACACTGACCGGG TCCTGTCCCTTTCTTGGTCTGGAGATGATCGTTTTTTGGTCTCATGTGGG AGAGATGGATTGGTAGTACGGTGGCATGTACGAAGTGGACGTGCTGCTGG TCAAATTTCGTATCGCGACATGTCTTTGACATCTGTCGATGCGCGGCATT CCCCTGCAGCCACCAATGCTGTTGTTTGTGGCACGGACCTTCATGCATCT CGTCGTTCTTCCCTTCGTGTCATTTCTTTCCCGGACACTGAGCCTGGATC CATGGCAATCACAAGTGGCAAAGTAGGTGGTGGGATGGCAGCTTTATCGA GAAGAGGTGAATCACCATCGACAGTATCTGCAGTGGACCTTGGGTCAACT GTCCTCTCATCCATTGCAGTTCTTCCATCCGCACTTGGGTTGATTGCTTC CACAAAGACTCCGTATTCACAAGGATCGATTTTGTTGACCCCATGGCCCA TTGAAGAAGGTGATGATGTGAGTGTTGCTTGGGAAACTGTTGTTTCACAT CAAGGACCAGTGACTAGCATCACTTGCACTCCAGATTCAAGAGCTGTGGT ATCAGGAGGTGCTGATGGATCGATTCATATCTATCGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig73628:118..954+

>mRNA_M-pyrifera_M_contig73628.17449.1 ID=mRNA_M-pyrifera_M_contig73628.17449.1|Name=mRNA_M-pyrifera_M_contig73628.17449.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1674bp|location=Sequence derived from alignment at M-pyrifera_M_contig73628:118..954+ (Macrocystis pyrifera P11B4 male)
GATTTGTATTCTGTAGCGCTTCATCCAACTGGATCAACACTCTTGATTGG
ATTTGAGTCTTCTTTGCAGCTTGCTTCCTTGTTGATGGAAGATGTACGTC
CTGTCAAAGATTTTCCAATTCGAAAGTGTACTACAGTACGCTTTGCCAAT
GGTGGACATTTGTTTGCTGCTGGAAATGGAGCTGCAATTCATGTCTATGA
ATCATTGACAGGTGCAGCTGTGACAACCCTTCGAGGACACACTGACCGGG
TCCTGTCCCTTTCTTGGTCTGGAGATGATCGTTTTTTGGTCTCATGTGGG
AGAGATGGATTGGTAGTACGGTGGCATGTACGAAGTGGACGTGCTGCTGG
TCAAATTTCGTATCGCGACATGTCTTTGACATCTGTCGATGCGCGGCATT
CCCCTGCAGCCACCAATGCTGTTGTTTGTGGCACGGACCTTCATGCATCT
CGTCGTTCTTCCCTTCGTGTCATTTCTTTCCCGGACACTGAGCCTGGATC
CATGGCAATCACAAGTGGCAAAGTAGGTGGTGGGATGGCAGCTTTATCGA
GAAGAGGTGAATCACCATCGACAGTATCTGCAGTGGACCTTGGGTCAACT
GTCCTCTCATCCATTGCAGTTCTTCCATCCGCACTTGGGTTGATTGCTTC
CACAAAGACTCCGTATTCACAAGGATCGATTTTGTTGACCCCATGGCCCA
TTGAAGAAGGTGATGATGTGAGTGTTGCTTGGGAAACTGTTGTTTCACAT
CAAGGACCAGTGACTAGCATCACTTGCACTCCAGATTCAAGAGCTGTGGT
ATCAGGAGGTGCTGATGGATCGATTCATATCTATCGAGATTTGTATTCTG
TAGCGCTTCATCCAACTGGATCAACACTCTTGATTGGATTTGAGTCTTCT
TTGCAGCTTGCTTCCTTGTTGATGGAAGATGTACGTCCTGTCAAAGATTT
TCCAATTCGAAAGTGTACTACAGTACGCTTTGCCAATGGTGGACATTTGT
TTGCTGCTGGAAATGGAGCTGCAATTCATGTCTATGAATCATTGACAGGT
GCAGCTGTGACAACCCTTCGAGGACACACTGACCGGGTCCTGTCCCTTTC
TTGGTCTGGAGATGATCGTTTTTTGGTCTCATGTGGGAGAGATGGATTGG
TAGTACGGTGGCATGTACGAAGTGGACGTGCTGCTGGTCAAATTTCGTAT
CGCGACATGTCTTTGACATCTGTCGATGCGCGGCATTCCCCTGCAGCCAC
CAATGCTGTTGTTTGTGGCACGGACCTTCATGCATCTCGTCGTTCTTCCC
TTCGTGTCATTTCTTTCCCGGACACTGAGCCTGGATCCATGGCAATCACA
AGTGGCAAAGTAGGTGGTGGGATGGCAGCTTTATCGAGAAGAGGTGAATC
ACCATCGACAGTATCTGCAGTGGACCTTGGGTCAACTGTCCTCTCATCCA
TTGCAGTTCTTCCATCCGCACTTGGGTTGATTGCTTCCACAAAGACTCCG
TATTCACAAGGATCGATTTTGTTGACCCCATGGCCCATTGAAGAAGGTGA
TGATGTGAGTGTTGCTTGGGAAACTGTTGTTTCACATCAAGGACCAGTGA
CTAGCATCACTTGCACTCCAGATTCAAGAGCTGTGGTATCAGGAGGTGCT
GATGGATCGATTCATATCTATCGA
back to top