mRNA_M-pyrifera_M_contig73516.17425.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig73516.17425.1
Unique NamemRNA_M-pyrifera_M_contig73516.17425.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A6H5J845_9PHAE (Cysteine synthase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J845_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.690e-28
Identity = 56/59 (94.92%), Postives = 58/59 (98.31%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLK 177
            SMI EAEKRGQ+KPGVTTLVEPTSGNTGIACAMVAAARGYDI+LTMPDSMSLERRVLLK
Sbjct:  110 SMIDEAEKRGQIKPGVTTLVEPTSGNTGIACAMVAAARGYDIVLTMPDSMSLERRVLLK 168
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A7S0NV34_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NV34_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 4.950e-26
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVL 183
            SMITEAEKRG +KPG TTLVEPTSGNTGIA AMVAAA+GYD+ILTMP+SMS+ERRV+LK L
Sbjct:  106 SMITEAEKRGDIKPGETTLVEPTSGNTGIALAMVAAAKGYDLILTMPESMSMERRVMLKAL 166
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A6U5G064_9EUKA (Cysteine synthase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A6U5G064_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 4.590e-25
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVL 183
            SMITEAEKRG +KPG TTLVEPTSGNTGIA AMVAAA+GYD+ILTMP+SMS+ERRV+LK L
Sbjct:   64 SMITEAEKRGDIKPGETTLVEPTSGNTGIALAMVAAAKGYDLILTMPESMSMERRVMLKAL 124
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A7S2MJQ3_9STRA (Cysteine synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MJQ3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.870e-24
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVLNDDMRL 201
            +MI EAEKRG + PGVTTLVEPTSGNTGIA AMVAAA+GY +ILTMP+SMS+ERRVLLK    D+RL
Sbjct:  100 AMIEEAEKRGDITPGVTTLVEPTSGNTGIALAMVAAAKGYKLILTMPESMSMERRVLLKAFGADLRL 166
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A7S3NI97_9STRA (Cysteine synthase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI97_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.240e-24
Identity = 51/67 (76.12%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVLNDDMRL 201
            SMI EAEKRG+++PG TTLVEPTSGNTGIA AMVAAA+GY IILTMP+SMS+ERRVLLK    D+ L
Sbjct:   66 SMIAEAEKRGEIRPGETTLVEPTSGNTGIALAMVAAAKGYKIILTMPESMSMERRVLLKAFGADLVL 132
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A7S0M7Y2_9CRYP (Cysteine synthase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M7Y2_9CRYP)

HSP 1 Score: 102 bits (253), Expect = 4.220e-24
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVLNDDMRL 201
            SMI EAEKRG++ PG TTL+EPTSGNTGI  AMVAAA+GYD+ILTMPDSMSLERRV+LK L   + L
Sbjct:  107 SMIAEAEKRGEISPGKTTLIEPTSGNTGIGLAMVAAAKGYDLILTMPDSMSLERRVMLKALGSKLVL 173
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: F0YFN6_AURAN (Cysteine synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YFN6_AURAN)

HSP 1 Score: 100 bits (250), Expect = 5.650e-24
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVLNDDMRL 201
            SMI EAEKRG + PG TTLVEPTSGNTGIA AMVAA++GYDI+LTMP+SMS+ERRVLLK    D+ L
Sbjct:   56 SMIAEAEKRGDIAPGKTTLVEPTSGNTGIALAMVAASKGYDIVLTMPESMSMERRVLLKAFGADLVL 122
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A7S1GXT5_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GXT5_HEMAN)

HSP 1 Score: 98.6 bits (244), Expect = 7.540e-24
Identity = 49/61 (80.33%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVL 183
            SMI EAEKRG + PG T LVEPTSGNTGIA AMVAAA+GYD+ILTMP+SMSLERRV+LK L
Sbjct:  115 SMINEAEKRGDITPGKTVLVEPTSGNTGIALAMVAAAKGYDLILTMPESMSLERRVMLKAL 175
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BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: A0A0M0JL59_9EUKA (Cysteine synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JL59_9EUKA)

HSP 1 Score: 100 bits (250), Expect = 1.010e-23
Identity = 49/61 (80.33%), Postives = 57/61 (93.44%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVL 183
            SMITEAE+RG + PGVTTLVEPTSGNTGIA AMVAAA+GY++ILTMP+SMS+ERRV+LK L
Sbjct:   96 SMITEAEQRGDITPGVTTLVEPTSGNTGIALAMVAAAKGYELILTMPESMSMERRVMLKAL 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Match: R1D8F4_EMIHU (Cysteine synthase n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D8F4_EMIHU)

HSP 1 Score: 99.4 bits (246), Expect = 1.730e-23
Identity = 48/67 (71.64%), Postives = 58/67 (86.57%), Query Frame = 1 
Query:    1 SMITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMSLERRVLLKVLNDDMRL 201
            SMITEAE+RG +KPG TTLVEPTSGNTGI  AMVAAA+GY ++LTMP+SMS+ERRV+LK L  ++ L
Sbjct:   94 SMITEAERRGDIKPGETTLVEPTSGNTGIGLAMVAAAKGYKLVLTMPESMSMERRVMLKALGAELVL 160
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig73516.17425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J845_9PHAE3.690e-2894.92Cysteine synthase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A7S0NV34_9EUKA4.950e-2683.61Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A6U5G064_9EUKA4.590e-2583.61Cysteine synthase n=1 Tax=Calcidiscus leptoporus T... [more]
A0A7S2MJQ3_9STRA1.870e-2476.12Cysteine synthase n=1 Tax=Dictyocha speculum TaxID... [more]
A0A7S3NI97_9STRA3.240e-2476.12Cysteine synthase n=1 Tax=Aureoumbra lagunensis Ta... [more]
A0A7S0M7Y2_9CRYP4.220e-2474.63Cysteine synthase n=1 Tax=Cryptomonas curvata TaxI... [more]
F0YFN6_AURAN5.650e-2474.63Cysteine synthase n=1 Tax=Aureococcus anophageffer... [more]
A0A7S1GXT5_HEMAN7.540e-2480.33Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0M0JL59_9EUKA1.010e-2380.33Cysteine synthase n=1 Tax=Chrysochromulina tobinii... [more]
R1D8F4_EMIHU1.730e-2371.64Cysteine synthase n=1 Tax=Emiliania huxleyi TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig73516contigM-pyrifera_M_contig73516:174..392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.5e-19
Seed eggNOG ortholog44056.XP_009039224.1
KEGG rclassRC00020,RC02814,RC02821
KEGG koko:K01738,ko:K20553
KEGG ReactionR00897,R03601,R04859
KEGG Pathwayko00270,ko00920,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04016,map00270,map00920,map01100,map01110,map01120,map01130,map01200,map01230,map04016
KEGG ModuleM00021
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine biosynthetic process from serine
EggNOG OGsCOG0031@1,KOG1252@2759
EC2.5.1.47
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons1
Model size219
Cds size216
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.3500254-UTR-M-pyrifera_M_contig73516:173..1761622816632.3500254-UTR-M-pyrifera_M_contig73516:173..176Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73516 174..176 +
1692278088.6260045-UTR-M-pyrifera_M_contig73516:173..1761692278088.6260045-UTR-M-pyrifera_M_contig73516:173..176Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig73516 174..176 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.3616455-CDS-M-pyrifera_M_contig73516:176..3921622816632.3616455-CDS-M-pyrifera_M_contig73516:176..392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73516 177..392 +
1692278088.63804-CDS-M-pyrifera_M_contig73516:176..3921692278088.63804-CDS-M-pyrifera_M_contig73516:176..392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig73516 177..392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig73516.17425.1prot_M-pyrifera_M_contig73516.17425.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig73516 177..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig73516.17425.1

>prot_M-pyrifera_M_contig73516.17425.1 ID=prot_M-pyrifera_M_contig73516.17425.1|Name=mRNA_M-pyrifera_M_contig73516.17425.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MITEAEKRGQVKPGVTTLVEPTSGNTGIACAMVAAARGYDIILTMPDSMS
LERRVLLKVLNDDMRLVGNRC*
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mRNA from alignment at M-pyrifera_M_contig73516:174..392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig73516.17425.1 ID=mRNA_M-pyrifera_M_contig73516.17425.1|Name=mRNA_M-pyrifera_M_contig73516.17425.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig73516:174..392+ (Macrocystis pyrifera P11B4 male)
AGCATGATCACGGAGGCGGAGAAGCGCGGACAGGTCAAGCCTGGCGTGAC
GACTCTGGTGGAGCCTACGAGCGGCAACACGGGCATTGCGTGCGCGATGG
TGGCGGCGGCCAGGGGCTACGATATCATCCTCACCATGCCCGACAGCATG
TCTCTCGAGCGAAGGGTGTTGCTCAAGGTGTTGAATGATGATATGCGTCT
GGTAGGAAATCGATGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig73516:174..392+

>mRNA_M-pyrifera_M_contig73516.17425.1 ID=mRNA_M-pyrifera_M_contig73516.17425.1|Name=mRNA_M-pyrifera_M_contig73516.17425.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig73516:174..392+ (Macrocystis pyrifera P11B4 male)
ATGATCACGGAGGCGGAGAAGCGCGGACAGGTCAAGCCTGGCGTGACGAC
TCTGGTGGAGCCTACGAGCGGCAACACGGGCATTGCGTGCGCGATGGTGG
CGGCGGCCAGGGGCTACGATATCATCCTCACCATGCCCGACAGCATGTCT
CTCGAGCGAAGGGTGTTGCTCAAGGTGTTGAATGATGATATGCGTCTGGT
AGGAAATCGATGCTGAATGATCACGGAGGCGGAGAAGCGCGGACAGGTCA
AGCCTGGCGTGACGACTCTGGTGGAGCCTACGAGCGGCAACACGGGCATT
GCGTGCGCGATGGTGGCGGCGGCCAGGGGCTACGATATCATCCTCACCAT
GCCCGACAGCATGTCTCTCGAGCGAAGGGTGTTGCTCAAGGTGTTGAATG
ATGATATGCGTCTGGTAGGAAATCGATGCTGA
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