mRNA_M-pyrifera_M_contig7351.17424.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7351.17424.1
Unique NamemRNA_M-pyrifera_M_contig7351.17424.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: D7FX95_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX95_ECTSI)

HSP 1 Score: 309 bits (791), Expect = 2.150e-105
Identity = 161/187 (86.10%), Postives = 174/187 (93.05%), Query Frame = 1 
Query:    1 MESQDPMDSIRSAVEHADRNPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSANGSHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYAETGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTVSNKDADGEWQDEPGTEGMAPGTPV 561
            M+SQDPMD+IR+AVEHAD+NPSKVVSYSWYLVL+FAAVDVLVA+I ++ NDSSANGSHAASFASVWTLFMV+ VSV GTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYA+   LA  DR MAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGT S+ D +GEWQDEPGT+GMAPGTPV
Sbjct:    1 MQSQDPMDNIRAAVEHADKNPSKVVSYSWYLVLIFAAVDVLVALINASTNDSSANGSHAASFASVWTLFMVLGVSVAGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYADEPGLATGDRTMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTASSND-EGEWQDEPGTDGMAPGTPV 186
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: A0A835Z9F7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9F7_9STRA)

HSP 1 Score: 141 bits (355), Expect = 1.700e-39
Identity = 76/151 (50.33%), Postives = 107/151 (70.86%), Query Frame = 1 
Query:   28 IRSAVEHADRNPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSS-ANGSHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYAETGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMNT 477
            +   +    RNP + V +SW++ ++F    V+V+I+T++KN  S A G  AA+F ++W L +++ V VTGTVIL+KYHTPLAVG LLGLT+M+SQ +FVLFAVFLAL +  E+G+   +D AMA F F LF L+ LFS VL ++R TV+ T
Sbjct:   12 LSDVMSDVKRNPGRCVGFSWFVTIIFVLAMVVVSIVTASKNSQSEAIGGDAAAFTALWVLLVLLLVGVTGTVILRKYHTPLAVGLLLGLTSMLSQLLFVLFAVFLALGQ--ESGTHQDSDHAMAAFMFILFFLFLLFSIVLAKFRMTVIET 160
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: A0A7S2V157_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V157_9STRA)

HSP 1 Score: 102 bits (255), Expect = 2.420e-24
Identity = 52/146 (35.62%), Postives = 92/146 (63.01%), Query Frame = 1 
Query:   55 RNPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSANGSHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYAETGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTVS 492
            +N  K ++Y+W+  L F A+  ++A + +++  S+   + A  FA++WT+ ++VA+ + G++++KK+ T LA+G  LG+  MMSQ   +LFA+F   A   ++ S +  D+ MA F FFLFL+YG F+ VLG +R  ++     +S
Sbjct:   14 KNARKTITYTWFTSLAFVAIAFIIACVATSR-ISAEGDNRALGFAAIWTVLLMVALGIGGSLVMKKFQTSLAIGFFLGVVIMMSQQCLILFAIFAGRAGATDSESESSADKGMASFCFFLFLIYGFFASVLGYFRKDLIRDADAMS 158
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: A0A6V1N1N4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N1N4_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 1.460e-22
Identity = 61/156 (39.10%), Postives = 87/156 (55.77%), Query Frame = 1 
Query:   46 HADRNPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSANGSHAA-SFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYAETGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTVSNKDADG 510
            H  RNP K + Y+W   L   A+  + A + ++K   S  GS+ A  FA V+T+ +++ +SV GT +L+KY TPLAVG  LG+  MMSQ   ++FAVF   A      S    D A+A F F LF++YG F+ VL  +R  +M       N +A G
Sbjct:   11 HCARNPDKTIQYTWLASLALVAISFICACVAASK--ISTEGSNTAIGFAGVYTVLLMILLSVGGTFVLRKYKTPLAVGFFLGVVLMMSQQCLIIFAVFAGRAGVTTLSSEIGADNAVAFFCFVLFMVYGFFAGVLAFFRNDLMKATDAY-NSNAGG 163
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: W7TD56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD56_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.750e-22
Identity = 58/149 (38.93%), Postives = 91/149 (61.07%), Query Frame = 1 
Query:   67 KVVSYSWYLVLLFAAVDVLVAIITSA--KNDSSANGSHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYAETGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMN-TPGTVSNKDA 504
            KV++Y WYL  L +   V+VAI  +A  K+  +A  +HAA FA++W++ ++  + + GT+ +K+  TP+A G  LG   M SQ   +LFA+F+ LA+ +      R++ AMAVF+FFLF+LY +FS  L  +R  V++  P    N  A
Sbjct:   41 KVIAYLWYLNALLSIAYVVVAIAAAANQKDLETATTNHAAGFAAIWSMLILFLIIIGGTITMKRLKTPIATGVFLGACIMYSQMQLLLFAIFVGLAQTSSGDVERRSNNAMAVFAFFLFILYTVFSVCLYFFRHYVIDDAPAPAENSYA 189
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: A0A7S2CT56_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CT56_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.300e-22
Identity = 58/162 (35.80%), Postives = 95/162 (58.64%), Query Frame = 1 
Query:   19 MDSIRSAVEHAD----------RNPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSANGSHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYAET--GSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTV 468
            MD ++S+++  D           +P+ ++ + W L ++ A  DV+ ++  ++ NDS  +GS  A FA++W++FMV+ +SV     L K+ TP A+G L+G   MMSQ    LF VF+ LA  AE     L  ++ AMA FSF LF++YG+F  ++ ++R  V
Sbjct:    1 MDKLKSSIKCVDGCPPSMARYKEDPAVLLQHIWLLSVVIAFADVITSLSVASGNDSLRHGSKGAGFAAIWSMFMVIGISVYAYYALTKWCTPFAIGYLIGALLMMSQMFLTLFCVFVGLARAAEDTDDQLNSDNGAMAFFSFVLFVVYGVFGGLVFKHRGAV 162
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: G4YTQ3_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=G4YTQ3_PHYSP)

HSP 1 Score: 95.9 bits (237), Expect = 3.640e-21
Identity = 57/172 (33.14%), Postives = 93/172 (54.07%), Query Frame = 1 
Query:   19 MDSIRSAVEHADRNPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSANG-SHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYA-------ETGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMNT-----PGTVSN 495
            M+   S       NP  +++Y W+  +LF  +  + AI+ +  ND      S +  F  VW + ++VA+SV GT++++K+ TPLAVG L+G+  MMS  MF L  +F   A  A       +  +   ++ A +VFSFF+F+LY +F+ VL R+R  V+       P  ++N
Sbjct:    1 MEDASSKARKCINNPKMLITYLWFSTMLFGFMYAIAAIVAAVNNDGEGESDSKSLGFVGVWAMILIVALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFAIVLVRHRNIVIKEGVNLDPNAINN 172
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: A0A024U228_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=A0A024U228_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.650e-21
Identity = 58/150 (38.67%), Postives = 93/150 (62.00%), Query Frame = 1 
Query:   58 NPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSA-NGSHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMF---VLFAVFLALAEYAETGSLARN--------DRAMAVFSFFLFLLYGLFSFVLGRYRTTVM 471
            NP  V+++ W+ +L FA +  L AI+ +A N+      S +  FA +W +F+V+A+S+ GT++L+KY TP+A+G  +G+  MMS  MF   VL A    LA+ +  G+L+ N        D A AVFSFF+F+LY  F+ VL ++R+ ++
Sbjct:   42 NPKFVITHLWFTILFFAMMFSLGAIVFAANNNGDGPQFSKSLGFAGIWMMFLVIALSIGGTMVLRKYQTPIAIGFFIGVVIMMSLNMFSLSVLCAGAAYLAKRSNNGTLSENGWKGPVHSDEASAVFSFFMFVLYFAFAVVLVKHRSIII 191
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: A0A6A3XBJ2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XBJ2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-20
Identity = 57/172 (33.14%), Postives = 93/172 (54.07%), Query Frame = 1 
Query:   19 MDSIRSAVEHADRNPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSANG-SHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYA-------ETGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMNT-----PGTVSN 495
            M+   S       NP  +++Y W+  +LF  +  + AI+ +  ND      S +  F  VW + ++VA+SV GT++++K+ TPLAVG L+G+  MMS  MF L  +F   A  A       +  +   ++ A +VFSFF+F+LY +F+ VL R+R  V+       P  ++N
Sbjct:   58 MEDASSKARKCINNPKMLITYLWFSTILFGFMYAIAAIVAAVNNDGEGESDSKSLGFVGVWAMILIVALSVGGTMVMRKHQTPLAVGFLIGVVLMMSLQMFSLSIIFAGAAYLARIERAKGDEHTNVHSNEAGSVFSFFMFILYAVFTIVLVRHRNIVIKEGVNLDPNAINN 229
[Close]
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Match: A0A5D6YEA3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YEA3_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.390e-20
Identity = 53/152 (34.87%), Postives = 87/152 (57.24%), Query Frame = 1 
Query:   58 NPSKVVSYSWYLVLLFAAVDVLVAIITSAKNDSSANG-SHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTMMSQFMFVLFAVFLALAEYAE-------TGSLARNDRAMAVFSFFLFLLYGLFSFVLGRYRTTVMNTPGTV 489
            NP  +++Y W++ L+F  +  L AI+ +  N+ S    S +  F  VW +F+++ +SV GT++++KY TPLAVG  +G+  MMS  MF L  +F   A  A        T     ++ A ++FSFF+F+LY  FS VL ++R  ++    T+
Sbjct:   18 NPKLLITYLWFITLVFGFMYALAAIVAAVNNNGSGEADSKSLGFVGVWAMFLIIGLSVGGTMVMRKYQTPLAVGFFIGVVIMMSLQMFTLSVLFAGAAYLARQERDKGNTSVSVHSNDAGSIFSFFMFVLYLAFSIVLIKHRNVIIKEGVTL 169
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7351.17424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX95_ECTSI2.150e-10586.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9F7_9STRA1.700e-3950.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V157_9STRA2.420e-2435.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1N1N4_HETAK1.460e-2239.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TD56_9STRA1.750e-2238.93Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2CT56_9STRA4.300e-2235.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
G4YTQ3_PHYSP3.640e-2133.14Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A024U228_9STRA3.650e-2138.67Uncharacterized protein n=6 Tax=Aphanomyces TaxID=... [more]
A0A6A3XBJ2_9STRA1.080e-2033.14Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A5D6YEA3_9STRA1.390e-2034.87Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7351contigM-pyrifera_M_contig7351:3951..10492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue9.4e-82
Seed eggNOG ortholog2880.D7FX95
Hectar predicted targeting categorysignal anchor
EggNOG OGs2B4VH@1,2S0HS@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_004050.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size564
Cds size564
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7351.17424.1prot_M-pyrifera_M_contig7351.17424.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7351 3951..10492 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816632.2578766-CDS-M-pyrifera_M_contig7351:3950..40491622816632.2578766-CDS-M-pyrifera_M_contig7351:3950..4049Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 3951..4049 +
1692278088.5610785-CDS-M-pyrifera_M_contig7351:3950..40491692278088.5610785-CDS-M-pyrifera_M_contig7351:3950..4049Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 3951..4049 +
1622816632.2716343-CDS-M-pyrifera_M_contig7351:6649..68021622816632.2716343-CDS-M-pyrifera_M_contig7351:6649..6802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 6650..6802 +
1692278088.5775177-CDS-M-pyrifera_M_contig7351:6649..68021692278088.5775177-CDS-M-pyrifera_M_contig7351:6649..6802Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 6650..6802 +
1622816632.285382-CDS-M-pyrifera_M_contig7351:8319..84931622816632.285382-CDS-M-pyrifera_M_contig7351:8319..8493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 8320..8493 +
1692278088.5960064-CDS-M-pyrifera_M_contig7351:8319..84931692278088.5960064-CDS-M-pyrifera_M_contig7351:8319..8493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 8320..8493 +
1622816632.3006575-CDS-M-pyrifera_M_contig7351:9794..98491622816632.3006575-CDS-M-pyrifera_M_contig7351:9794..9849Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 9795..9849 +
1692278088.6075318-CDS-M-pyrifera_M_contig7351:9794..98491692278088.6075318-CDS-M-pyrifera_M_contig7351:9794..9849Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 9795..9849 +
1622816632.3136127-CDS-M-pyrifera_M_contig7351:10409..104921622816632.3136127-CDS-M-pyrifera_M_contig7351:10409..10492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 10410..10492 +
1692278088.6162503-CDS-M-pyrifera_M_contig7351:10409..104921692278088.6162503-CDS-M-pyrifera_M_contig7351:10409..10492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7351 10410..10492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7351.17424.1

>prot_M-pyrifera_M_contig7351.17424.1 ID=prot_M-pyrifera_M_contig7351.17424.1|Name=mRNA_M-pyrifera_M_contig7351.17424.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=188bp
MESQDPMDSIRSAVEHADRNPSKVVSYSWYLVLLFAAVDVLVAIITSAKN
DSSANGSHAASFASVWTLFMVVAVSVTGTVILKKYHTPLAVGTLLGLTTM
MSQFMFVLFAVFLALAEYAETGSLARNDRAMAVFSFFLFLLYGLFSFVLG
RYRTTVMNTPGTVSNKDADGEWQDEPGTEGMAPGTPV*
back to top

mRNA from alignment at M-pyrifera_M_contig7351:3951..10492+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7351.17424.1 ID=mRNA_M-pyrifera_M_contig7351.17424.1|Name=mRNA_M-pyrifera_M_contig7351.17424.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=6542bp|location=Sequence derived from alignment at M-pyrifera_M_contig7351:3951..10492+ (Macrocystis pyrifera P11B4 male)
ATGGAGTCTCAAGATCCTATGGACAGCATCCGGTCCGCCGTGGAGCATGC
CGACCGCAACCCCTCCAAGGTGGTCTCGTACTCCTGGTATCTCGTGCTGG
TGAGTGCGCGACAAGTCACCGTGTAACTATTATAGCTAACCCTGATAGGA
CTCCATTCCCGTTTTGGGGACAAGTCACTCACTCTAATTCTAAGTAGTTT
GTCCCCATATATATATATGGGACTGCGGTCTTGAAAGGGATATCACACGG
GTGATAGATAGATAGATAGGACAACACCCCCCCTCCCCTGCAACGAATTT
CGAGGCTGATTTTCCTCGGCAATGATTAAGGTGCAAACGACGAGCGAGGA
AGGGAGTCTATGCGATGGAAAAGCTCTGCTGTAGTCGAGGTACTTTCTCC
TAAGCCGCGTACTTTCGCCTAAGCCACCATCGTGTTCGTCGTGTGTGTGT
GCCCTATGATACTGTAGAGACCCTTAAGGCGTGTTTTGGAGAACCTTGGC
TCGGATTTTTTTTTTTTATCCCAGGGGGGGCGTGTTTTATTATCACCCTT
GTGATACGGCGGTACGTCTGTGGTGAGGTATGGCGTGGTGATGTGGTGGT
GGTGGGTATGGGAATGGTGGTGGTGGTGGTAGTGGGGACGATGATGGGGA
TGGTGGTGGTGGAGGGATGGTGGTAGTGGGGATATGGTGGTGGTGGTGGT
GGTGGTGGTATTGACGGTGGTTTTTGTCATGGTGATTATGGGAGTGGTGG
CGGTGGTTGTGGTGGGTGTGGTGGTGGTGGTGGCCATGGGGACTGTGACC
TTGATGATGGTGGTGATGGCGGTGGTGGTGGTTGGAGAAAAACTAGGTAC
CTGGTATGTACTATAATTACGGCAGATAAGCTGATCGGGTTACCTTATCT
GAGCACTGGTGGCTGTAGCTGCTTGTTTCTCTTCCTTCCACGCCGACAGT
GGAAGTAAAACCCAGGCCGACAGACAGGTGGACGGGTAGCAAACATGCTA
CTGTGGGAGACCCTTGTTTGACCCTCTTGACTGACCGCTCCCCCCACACA
TGACAACCACTACAGTAAACGCCACAAAAGTCCTTGCCGCGCCCACGATG
ACCGATACCTACATACAGTACGTACGTAGCGTGACCGCGGTTTGACCGGG
AGACTGACCGCACCCCTACTCTAAAAATGGTAGACCAAGGCCCAAAGAGA
CCCCCTTGACGCGTCCAAGAAAAAAAGACCGGTCTCTCCTATTCCCCCCC
GAGATAGCAACCAAAACAATGGTAACTTTAGTGTGAGCGCCGAGCAGTAC
GGGTATAGGGTAAATGTCGCGCCGGTGCCGTGCGGCTTATTAATTATGTT
GCAACTCGGACACCCATATTTCGAATTGTCCCCCAATCACGCAGTTTCCG
GTGCTGTCATCGTCGTGTTGTGTTTGTCGTCGTCGTTTTCCCCCGGCCGT
CTGATGCATGTCTTAAGAGGATTAATTTTATTATTACCCTTATAGGACTG
TTAAGGACTGCGGTCCGGTGTTGGGGACAAAGCTCTCTAATTCTAAGCAG
TTTTTTTACTCAGAACGAGACTGCAGTTTTGCCTTGAAAGGGTTGATATT
ACGGGGGACCATAGCAAATAGGACCAAATATTGTTAGTAAAAATAGGGAA
ATATATAGGTTTTTATGTATACCCTATGGACCCCCGTAATAGCAAGCTTG
CACATGTGGGATAGATCACGGTGTACATACAAACAGTACACAAGTACAGG
AGATCATCTGTACCACAGCATACAGATCTGAGATGCCTGCCGGTTTAGAT
GGGTTGTTCGCACGAAAACAGCGGTACGTACCAAACAGATTTGTTGTCTA
TCGCCAGGCAAAACCGGATCAGGTCGGCCCTTGCTTGAAGCAGCCAGTAG
TTCCTTTTGCATCGTGCCTCACGACACAGTCTCTTCGTACAAGATTATTG
TGCAGTACGTGCCGGCCTTTTGTTTTACCGACTACGTATATGGTCATGTC
GTGGCTCCCTCCTTGCTGCGGAAATGTAGAAACGGATGGAATTAGTTCGC
GGTGGCCTTCCGTCTCCTCTCTTAAAAAGCCTGCCTGGTGAGATTTTTTG
GTACGGCTGTTCGTGTATAGCATATCAAAACGGCAAATGTAAAATGTACA
TGAATGTACAGTAGATCGTGGTGTATCTGATGGGCGAAGGCCACGACGGA
AGGAAGTACGGCGGACGGGCAAGGGGGTGTGTGTATTGTGCATGCGAACG
GAATAATCAAGAATGGGCCATTTTTTTTTTTTTTGTTCGGATATCGAAAC
CTTCGATATATCGATGTCAAACGTGCTTGCTTGCAATTTGAGTTATATTT
TGATACTTTGATTGGTGTTCGATTGACTGATTTGATTGATTGATTGATTG
ATTGATTGATTGGTATTCGGTTGGTGGATCGATCGATTGATTGATTGATT
AGTTGGTTTGTTGGTTGATTGATTGATTGATTGCTGATAGTGAACGAAAA
GTTTCGACGTCGTTTTTCTTGTTTTTCGTCAAAAGCCACGCCTATACCTG
GTAACCTATAACTTGCACTACCTTAGCCTTTACTGAACTGAAATACCAGG
TATAATCCTAACCCGATCACCTAACCTATCAACCTAAATCCCTCCGCGTT
GTTGAAAAATAAACGGTGGAACGGACGAACGGACGGATGCCGCGGCCAGC
TCTTCGCGGCGGTGGATGTGCTTGTGGCGATCATCACGTCGGCCAAGAAC
GACTCCTCGGCGAACGGCTCCCACGCCGCGTCTTTTGCTTCGGTGTGGAC
GCTGTTCATGGTGGTCGCTGTGTCGGTCACGGGAACTGTCATCTTGAAAA
AGGTACGAAGGTACTTAGAAGGTACGAAGGTACTTAGAAGGTGTGCGGTA
GTGGCCCTCTCTATGGTGCCGGTTGCCCGCTATCCGCTATGCCTGTTAAT
TAGTGCCTGTGTGGTTGTATGATAGTGTGCGGATTAGTGCCTGTGGAATC
GCTCGGCGTATATCGATGGGATTCACCTGTGCGGGGGGGGAGTGTGCGGG
CAGTAGCGCCGGTTTGCCCCCTACGCCAGGTGAAATACGTAGTGCCTGAC
AGGTGGAGTTGCTTGTTGGCGTAGATGGGATTCGCCAGTGTGGTGCACAG
CAGTGCGCGGGTTAGTGGTTGCCCGCTAGACGTGCGTGGTGGCTGTGGAA
TCGCTTGGCGTGGATTAGGATTCACCAGTCAGCGTGGCAAGTGTGCGGAG
TAGAATTATCGCGGGGGACCATAGTGAATAGGGGACCAATTTTTGGTAGA
AAAAACAGGTGAATATATAGGTTTTGTGTATACCATAGGTCCTATTAACT
ATGGCCCCCCGTATCAGTAGTGCTGGTTGCAGCCATGTTTAATGCCGGTA
TTGTTGCCTGGCGCGTGTGACACCGGCACTATACTGGTAGCGGCAACCGG
CACTACTCTGTACTATTACGGGGGGCCATAGTTAATAGGACCTATGGTAT
TGATGAAAAACCTTTCTATTTACCTATTTTTACTGACACTATTTGGTCCT
GTTTACTATGGATCCCCGTAGTAGTACTGCTCAATATTGCGGTGTTTGCG
CTGGGTGTATCATTATGATAAGTACTTCAGTAGCTACTCTGCAGTAGTGG
CAATCAGGACCCACGATGAGCCCAAATATGCCCGAAAAATGTCTACACAC
CATATTCGGTACAGCTGTTGCTAAAATTGCGGGGGGCCATAGTAAATAGG
ACCAAATATCGTCAGTAAAACTAGCTAAATATATCAGGTTTTTGTGTGTA
CCGTAGGTCCTATTTACTGTGGTTCTCCGTAAATAATAGAAACTCGCGCA
ATAAGATATAATTGTAACTGTCGTCAAGTTTTGTGCGTTCATCGCAAAAG
AGCAGACCGTGGGTATTTATGTACCACTGTGATGTGGTGTGGGTGTTTTT
TTTTTCAAATGTTGATTGTCCTTGTTGCCGGTGACATTTGGTGATTGTGA
TGGTGGTACGGGTTTTTGTCTCATCCTCACGTCTGCGTTGCTTCCCTCTC
TCTTCTCTCTGCCCCTCTGCCTCCCCCCCCCCCTACTCACCCCCCCTCTG
TTCTGTCGTTTTTTATTCTGCCTTCTCTCGTGCTGTTCCGTTCCGTTCCC
TTCCCTTCTCCGTTCGGGATGATGCGGTTCTTTTCTGCTCTCTCTCGTTT
TCTTCTCCGTTCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT
GGTCGGGATGATGACGATGATGATGATTGCGTTGATGTTGATGATGATGG
TAATGGTATTGTTGTTGGTGATGATGATGGTGATGTGGATGATGATGCTG
GTGACTTGGTGACGACCAGTACCACACGCCATTGGCGGTGGGCACCCTGT
TGGGGCTGACGACCATGATGTCTCAGTTCATGTTCGTGCTGTTCGCGGTT
TTCCTGGCGCTCGCGGAGTACGCGGAGACGGGCTCCTTGGCGCGGAATGA
CCGAGCAATGGCCGTCTTCTCCTTCTTCCTCTTCCTGCTATACGTGAGAG
ACAGACCCGCAAGAGTCGCCTGGAGACACACGGAAGCCGATTGTGTGAAA
TATTTGTATTTTTGAAAAATATCAGCGCTATGTATGAGATCGAAAAAATC
ATCGAACCTCGTTTTTTCAAGCTGTGTGTGATGCATTCTTCCATCGCGGA
CAATACGTGCCATGCACCGGGGGGTGTAGTGCGTATGGCGGTCTACAAAA
TCTGACAGTTTTTCGTTCAAAACGCACTCGGCACCTATGTGAACTATGTC
ATAGGAACAGTAGTCGACTTATTAATGTTATACCTGCGTTTCCTTTTTGA
ACGTGAGAAAGAAGAGAAGCGTTTCGAAGCACGGGGGTGTTGTGTTTTCG
CTCTTGCTTCTGTTCGTGCACCGCTCTTGTCATTGAGTGTAAGGTACGCT
TGTACCTTAGTGTTCTATCCAAACGATGCCTGTCTGTGTGTGGGTGTGGA
CAAGCGTGGTCTGTACGTGTGGGAGAGCACGGGTTGTTCTAGACTAAAGA
CTTAGGGAGTAGGTCATGTCACTTTCCTTCTTTTACGCGAGAGAAAAAGA
GACTTGAGAAACATCTGGGTTAGTGCTCTCCTTTTTTTGTTTTTGTTTTC
GGCAAGAAAACGAGCAGATCGAGGAAAGAGAGCTGAGAAGGCACCAGGTA
GGAAGTAGATCCCTTCCCCTTCCTTTTTTTCCCACATGCAGTAAAAAAGC
GAAGTGAGGGGAGCAAAGCGTGCCTTGTTTTTGGTGTTCTCCGTTGGTTG
GTGTTGCGTTGAAGGTAACATGGTTTTGTGCAGGTATTGATGCGGTATCT
TGTCGGAGGTGACCGTTGGGCTGGCATGGTTGGCATCGTTTGTTTTAGCG
TTGGCACGCTGCCCCCCTCCCCACCCCACCCCACTAGTCAAACGACCACG
GCCATGCATGAATAAGAGTACACCCTCCCCCCCCCCTACCGTCTCCATCC
ACCCTCCGGCCTAAACAAACCTCTCACAGGCCGGGTCCATCTAGTCCCAA
GTAATTAGAGTAGGTTTTGTTTGATAAGTCGGCGTGTCCTTGCAATACAA
CAGCAGGATCTTGCCCTCACTTCCGCCTGCCTCCTGCACCCCCCCCCCCC
CGCTTTGCCACTTTTTTGTTGCTTTGCTCCGGGGCCCTTTTCNNNNNNNN
NNTTTGCCCAAAATATTGAGGGTGGTTTTTTTTTTAACGGCCGGCTGTCT
TCTCCCACCCACAAGCGGGTTTTTCCCTTCCTTCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCGCTTTGCCACTTTTTTGTTGCTATGCTCAGGGTCTC
TTCTCCTTCGTCCTGGGGCGCTACCGCACCACCGTCATGAATACCCCTGG
TAACAGACTAGGAGACTAAGAGACTAGGAGAGAGAGAGCTGCTGGTGCTC
ATAGATGGGGTTGCAAGAGCATGTATATTATACCGTAACACTGCGAACGG
TTCCCACCCTGCCTTTCTCTATGTAACATATGGAAACAACGTACTTGGGG
CCCAACTACTGTTATTCCCTCTATAAGACGTAGGAACAGTGCTCCGCCTC
GAAATGGATGCGTGGTCCATTGTCAAATGACTTAAGGCAAGCAGCAAATG
AGTACGCCTCCCCCCCCGCCCTGGTATGCCTCTTTGCTTGTTTGGCTGTC
TGACGCACCGGAGTAGCAGCTTTAAGCCCAAAAGCACCCCCATCCCCCCC
CCCCCTCCCATGCTCCGTCTCGAAAGGAACGCGTGGTCACTGGTCTAACG
TCTATGTCAATCAACAAATGAGTAGGCCCCCCCTCCCTCCCCTCTCCTTC
CCCCCCCGAGTGCGGCCATGCATGACATGACTTGAGTACCCGCCCCCCCA
CCCACCCACCCACCCGCGGTATGCCTCTTTACTTGTTTGCCGATATTGAT
GCGCCGCAGGGACGGTGTCGAACAAAGATGCAGACGGAGAGTGGCAGGAT
GAGCCCGGAACTGAGGGCATGGCCCCGGGCACCCCAGTTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig7351:3951..10492+

>mRNA_M-pyrifera_M_contig7351.17424.1 ID=mRNA_M-pyrifera_M_contig7351.17424.1|Name=mRNA_M-pyrifera_M_contig7351.17424.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1128bp|location=Sequence derived from alignment at M-pyrifera_M_contig7351:3951..10492+ (Macrocystis pyrifera P11B4 male)
ATGGAGTCTCAAGATCCTATGGACAGCATCCGGTCCGCCGTGGAGCATGC
CGACCGCAACCCCTCCAAGGTGGTCTCGTACTCCTGGTATCTCGTGCTGA
TGGAGTCTCAAGATCCTATGGACAGCATCCGGTCCGCCGTGGAGCATGCC
GACCGCAACCCCTCCAAGGTGGTCTCGTACTCCTGGTATCTCGTGCTGCT
CTTCGCGGCGGTGGATGTGCTTGTGGCGATCATCACGTCGGCCAAGAACG
ACTCCTCGGCGAACGGCTCCCACGCCGCGTCTTTTGCTTCGGTGTGGACG
CTGTTCATGGTGGTCGCTGTGTCGGTCACGGGAACTGTCATCTTGAAAAA
GCTCTTCGCGGCGGTGGATGTGCTTGTGGCGATCATCACGTCGGCCAAGA
ACGACTCCTCGGCGAACGGCTCCCACGCCGCGTCTTTTGCTTCGGTGTGG
ACGCTGTTCATGGTGGTCGCTGTGTCGGTCACGGGAACTGTCATCTTGAA
AAAGTACCACACGCCATTGGCGGTGGGCACCCTGTTGGGGCTGACGACCA
TGATGTCTCAGTTCATGTTCGTGCTGTTCGCGGTTTTCCTGGCGCTCGCG
GAGTACGCGGAGACGGGCTCCTTGGCGCGGAATGACCGAGCAATGGCCGT
CTTCTCCTTCTTCCTCTTCCTGCTATACTACCACACGCCATTGGCGGTGG
GCACCCTGTTGGGGCTGACGACCATGATGTCTCAGTTCATGTTCGTGCTG
TTCGCGGTTTTCCTGGCGCTCGCGGAGTACGCGGAGACGGGCTCCTTGGC
GCGGAATGACCGAGCAATGGCCGTCTTCTCCTTCTTCCTCTTCCTGCTAT
ACGGTCTCTTCTCCTTCGTCCTGGGGCGCTACCGCACCACCGTCATGAAT
ACCCCTGGGTCTCTTCTCCTTCGTCCTGGGGCGCTACCGCACCACCGTCA
TGAATACCCCTGGGACGGTGTCGAACAAAGATGCAGACGGAGAGTGGCAG
GATGAGCCCGGAACTGAGGGCATGGCCCCGGGCACCCCAGTTTAAGGACG
GTGTCGAACAAAGATGCAGACGGAGAGTGGCAGGATGAGCCCGGAACTGA
GGGCATGGCCCCGGGCACCCCAGTTTAA
back to top