mRNA_M-pyrifera_M_contig7342.17409.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7342.17409.1
Unique NamemRNA_M-pyrifera_M_contig7342.17409.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: D7FN46_ECTSI (50S ribosomal protein L5, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN46_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 1.150e-111
Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 2 
Query:    2 AETKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            AE KTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKA YTVRSFGIRRNEKIACHVTVRG+KALEILERGLKVKEYELKR NFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDF+VVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIV G
Sbjct:    2 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: A0A0J8BKL6_BETVV (Uncharacterized protein n=6 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0J8BKL6_BETVV)

HSP 1 Score: 280 bits (717), Expect = 1.630e-89
Identity = 133/168 (79.17%), Postives = 153/168 (91.07%), Query Frame = 2 
Query:   14 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            +NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQ+PVYSKA YTVRSFGIRRNEKIAC+VTVRGEKA+++LE GLKVKEYEL R NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG+++ 
Sbjct:    8 SNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVILN 175
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: B7GB09_PHATC (50S ribosomal protein L5, chloroplastic n=3 Tax=Bacillariophyta TaxID=2836 RepID=B7GB09_PHATC)

HSP 1 Score: 280 bits (716), Expect = 1.880e-89
Identity = 132/172 (76.74%), Postives = 154/172 (89.53%), Query Frame = 2 
Query:    2 AETKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            +ETKTN MR++KVDKL+LNC VGESGDRLTRAA+VLEQLTGQ PV+SKA YT+RSFGIRRNEKIA HVTVRGEKALEILERGLKVKEYEL + NFS+TG+FGFGI EHIDLG+KYDP+TGIYGMDF+V L RPG RVA+RK +  +IG+ HK+TK D++KWFQ KFEG+V+ 
Sbjct:    2 SETKTNAMREIKVDKLILNCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLQKNFSDTGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLTRPGARVARRKIRQGRIGFNHKITKEDSIKWFQDKFEGVVLA 173
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: A0A1Z5JJ06_FISSO (50S ribosomal protein L5, chloroplastic n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ06_FISSO)

HSP 1 Score: 280 bits (716), Expect = 1.950e-89
Identity = 133/172 (77.33%), Postives = 152/172 (88.37%), Query Frame = 2 
Query:    2 AETKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            AETK NPMRD+KVDK+V+NC VGESGDRLTRAA+VLEQLTGQ PV+SKA YT+RSFGIRRNEKIA HVTVRGEKALEILERGLKVKEYEL   NFS TG+FGFGI EHIDLG+KYDP+TGIYGMDF+V LNRPG RV++RK +  ++G  HK+TK DA+KWFQ KFEG+V+ 
Sbjct:    2 AETKANPMRDIKVDKMVINCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLDKNFSETGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLNRPGTRVSRRKIQQTRMGKNHKITKQDAIKWFQDKFEGVVLA 173
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: A0A7S2V4A8_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A8_9STRA)

HSP 1 Score: 279 bits (713), Expect = 4.960e-89
Identity = 135/167 (80.84%), Postives = 150/167 (89.82%), Query Frame = 2 
Query:   17 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            NPMR ++VDKLVLNCSVGESGDRLTRA KVLEQLTGQ+P  SKA YTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYEL+R NFS TG+FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPG RV KRKA+ +++G  H++ K DA+KWFQ KFEGIV+ 
Sbjct:    8 NPMRAVQVDKLVLNCSVGESGDRLTRAIKVLEQLTGQTPCVSKARYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELRRRNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLRRPGNRVGKRKARQSRMGAPHRLAKDDAIKWFQQKFEGIVMN 174
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: UPI00053C97D5 (60S ribosomal protein L11-1-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C97D5)

HSP 1 Score: 279 bits (713), Expect = 6.750e-89
Identity = 132/168 (78.57%), Postives = 153/168 (91.07%), Query Frame = 2 
Query:   14 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            +NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQ+PV+SKA YTVRSFGIRRNEKIAC+VTVRGEKA+++LE GLKVKEYEL R NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG+++ 
Sbjct:    9 SNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKEDAMKWFQVKYEGVILN 176
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: A0A0K9NLH5_ZOSMR (60S ribosomal protein L11a n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLH5_ZOSMR)

HSP 1 Score: 278 bits (712), Expect = 8.610e-89
Identity = 133/173 (76.88%), Postives = 156/173 (90.17%), Query Frame = 2 
Query:    2 AETK-TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            AE K +NPMR++KV KLVLN SVGESGDRLTRA+KVLEQL+GQSPV+SKA +TVRSFGIRRNEKIACHVTVRGEKA++++E GLKVKEYEL R NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG+++ 
Sbjct:    2 AERKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARFTVRSFGIRRNEKIACHVTVRGEKAMQLIESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRAKARVGIQHRVTKDDAMKWFQVKYEGVILN 174
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: A0A4Y7L2D6_PAPSO (Uncharacterized protein n=4 Tax=Papaveroideae TaxID=1462614 RepID=A0A4Y7L2D6_PAPSO)

HSP 1 Score: 278 bits (712), Expect = 9.220e-89
Identity = 132/168 (78.57%), Postives = 152/168 (90.48%), Query Frame = 2 
Query:   14 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            TNPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQ+PV+SKA YTVRSFGIRRNEKIAC+VTVRGEKAL++LE GLKVKEYEL R NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRV +R+   +++G QH+VTK DA+KWFQ K+EG+++ 
Sbjct:    8 TNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQAPVFSKARYTVRSFGIRRNEKIACYVTVRGEKALQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIQHRVTKEDALKWFQVKYEGVILN 175
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BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: A0A2G3C1E5_CAPCH (60S ribosomal protein L11 n=6 Tax=Spermatophyta TaxID=58024 RepID=A0A2G3C1E5_CAPCH)

HSP 1 Score: 278 bits (711), Expect = 1.600e-88
Identity = 132/167 (79.04%), Postives = 151/167 (90.42%), Query Frame = 2 
Query:   17 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKA YTVRSFGIRRNEKIAC+VTVRGEKA+++LE GLKVKEYEL R NFS TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   +++G QH+VTK DA+KWFQ K+EG+++ 
Sbjct:   16 NPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Match: A0A1S3ZDW5_TOBAC (60S ribosomal protein L11-1-like n=7 Tax=Pentapetalae TaxID=1437201 RepID=A0A1S3ZDW5_TOBAC)

HSP 1 Score: 277 bits (708), Expect = 3.560e-88
Identity = 131/168 (77.98%), Postives = 152/168 (90.48%), Query Frame = 2 
Query:   14 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVIG 517
            +NPMR++KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKA YTVRSFGIRRNEKIAC+VTVRGEKA+++LE GLKVKEYEL R NFS TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   +++G QH+VTK DA+KWFQ K+EG+++ 
Sbjct:    8 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILN 175
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7342.17409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN46_ECTSI1.150e-11196.5150S ribosomal protein L5, chloroplastic n=2 Tax=Ec... [more]
A0A0J8BKL6_BETVV1.630e-8979.17Uncharacterized protein n=6 Tax=Chenopodiaceae Tax... [more]
B7GB09_PHATC1.880e-8976.7450S ribosomal protein L5, chloroplastic n=3 Tax=Ba... [more]
A0A1Z5JJ06_FISSO1.950e-8977.3350S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
A0A7S2V4A8_9STRA4.960e-8980.8450S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
UPI00053C97D56.750e-8978.5760S ribosomal protein L11-1-like isoform X1 n=2 Ta... [more]
A0A0K9NLH5_ZOSMR8.610e-8976.8860S ribosomal protein L11a n=1 Tax=Zostera marina ... [more]
A0A4Y7L2D6_PAPSO9.220e-8978.57Uncharacterized protein n=4 Tax=Papaveroideae TaxI... [more]
A0A2G3C1E5_CAPCH1.600e-8879.0460S ribosomal protein L11 n=6 Tax=Spermatophyta Ta... [more]
A0A1S3ZDW5_TOBAC3.560e-8877.9860S ribosomal protein L11-1-like n=7 Tax=Pentapeta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7342contigM-pyrifera_M_contig7342:2508..7252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score325.1
Seed ortholog evalue1.9e-86
Seed eggNOG ortholog2880.D7FN46
Preferred nameRPL11
KEGG koko:K02868,ko:K10523,ko:K15076
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG ModuleM00177,M00384
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0094@1,KOG0397@2759
Ec32 ortholog descriptionRibosomal protein L5
Ec32 orthologEc-06_008360.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400,ko04121
Exons5
Model size1503
Cds size498
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.3594851-UTR-M-pyrifera_M_contig7342:2507..25291622816631.3594851-UTR-M-pyrifera_M_contig7342:2507..2529Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7342 2508..2529 +
1692278087.9834368-UTR-M-pyrifera_M_contig7342:2507..25291692278087.9834368-UTR-M-pyrifera_M_contig7342:2507..2529Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7342 2508..2529 +
1622816631.4336312-UTR-M-pyrifera_M_contig7342:6269..72521622816631.4336312-UTR-M-pyrifera_M_contig7342:6269..7252Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7342 6270..7252 +
1692278088.047913-UTR-M-pyrifera_M_contig7342:6269..72521692278088.047913-UTR-M-pyrifera_M_contig7342:6269..7252Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7342 6270..7252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816631.3717513-CDS-M-pyrifera_M_contig7342:2529..26531622816631.3717513-CDS-M-pyrifera_M_contig7342:2529..2653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 2530..2653 +
1692278087.997104-CDS-M-pyrifera_M_contig7342:2529..26531692278087.997104-CDS-M-pyrifera_M_contig7342:2529..2653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 2530..2653 +
1622816631.382627-CDS-M-pyrifera_M_contig7342:4220..42821622816631.382627-CDS-M-pyrifera_M_contig7342:4220..4282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 4221..4282 +
1692278088.0070138-CDS-M-pyrifera_M_contig7342:4220..42821692278088.0070138-CDS-M-pyrifera_M_contig7342:4220..4282Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 4221..4282 +
1622816631.3928695-CDS-M-pyrifera_M_contig7342:4864..50151622816631.3928695-CDS-M-pyrifera_M_contig7342:4864..5015Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 4865..5015 +
1692278088.0171134-CDS-M-pyrifera_M_contig7342:4864..50151692278088.0171134-CDS-M-pyrifera_M_contig7342:4864..5015Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 4865..5015 +
1622816631.4047213-CDS-M-pyrifera_M_contig7342:5878..60091622816631.4047213-CDS-M-pyrifera_M_contig7342:5878..6009Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 5879..6009 +
1692278088.0275133-CDS-M-pyrifera_M_contig7342:5878..60091692278088.0275133-CDS-M-pyrifera_M_contig7342:5878..6009Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 5879..6009 +
1622816631.4199598-CDS-M-pyrifera_M_contig7342:6239..62691622816631.4199598-CDS-M-pyrifera_M_contig7342:6239..6269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 6240..6269 +
1692278088.0378716-CDS-M-pyrifera_M_contig7342:6239..62691692278088.0378716-CDS-M-pyrifera_M_contig7342:6239..6269Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7342 6240..6269 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7342.17409.1prot_M-pyrifera_M_contig7342.17409.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7342 2530..6269 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7342.17409.1

>prot_M-pyrifera_M_contig7342.17409.1 ID=prot_M-pyrifera_M_contig7342.17409.1|Name=mRNA_M-pyrifera_M_contig7342.17409.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=166bp
MRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKASYTVRSFG
IRRNEKIACHVTVRGEKALEILERGLKVKEYELKRNNFSNTGSFGFGIQE
HIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKCAKIGYQHKVTKTD
AVKWFQAKFEGIVIG*
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mRNA from alignment at M-pyrifera_M_contig7342:2508..7252+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7342.17409.1 ID=mRNA_M-pyrifera_M_contig7342.17409.1|Name=mRNA_M-pyrifera_M_contig7342.17409.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=4745bp|location=Sequence derived from alignment at M-pyrifera_M_contig7342:2508..7252+ (Macrocystis pyrifera P11B4 male)
GGCGGAGACTAAGACCAACCCGATGAGGGACCTCAAGGTCGACAAGCTGG
TGCTGAACTGCTCCGTTGGAGAGTCGGGTGACAGGCTGACGCGCGCGGCG
AAGGTGCTTGAGCAACTTACGGGCCAGTCTCCTGTCTACTCCAAGGGTGA
GCGTCTCTGCTATCAATAGAACATGGGAAAATGAGCCCTCAAAATTTCAG
ATGGCTGTGACTCCGGATATGCTTTGAACGGCAACCATTACGTGTGCTCC
GGAGTACTTGCACTGCAGGCTGTGCCAGTGGACCTGGTAGTACTCGTAGA
TGTAGTCGAAAACGAACGTACTCATATGTCATACTTGTGATAAAAATTAG
TCGTGCGCTATGTGCAGCTGCAACCTGCACAAAACTTTTGTGCAGGACCT
GTGGCGTCAATTCCAACCTTGCACGTGGACCCAGACAAACCCGACCCCAG
GCCGGACCCTAACCCGAACCCTTTGGGGGGCTCGAGGTCGGCAGGGGCAG
TCACGCGGCTACGCCGCTTGTTTTGGTGGCGTTTTTCCAAAAATACGCTG
GGCGCCCGGAAGACCCGCCTTGACCAATAAGACCCGCATCCTGCACAGTT
TTTTGTGCAAGATGCAGCTGCACATAGGTCAAGTCATGAATATTGTGGTA
CTCGTGCGTGTATGGAAGCATGTTCCTGTGAGTGCATCGTTGTTGGTTGT
TGGCGGACACGATTTTGATCACGGCAGGTTCTCGTTTTTTTGGTGAAGGA
GCCGCTAGAGGCTCCACCTTCTTCCAACCGTGCGCACAGCACCTATCATT
GCAGTTGGTATCGGTGCATGGACGAAGAAATGTGTGTTAACTCGTTCGTA
GCTGCGGTCACATTGCTGATGAGAATTTGTGCGAGATGCCAAGATGAACT
TTGCGAGTACTCGTATAAATGTACAATGAGTACGGGTTTTTGGCTTTAGT
ATCTGTACGAGTACTGCCGTACTGCTTGCCGTCCCCACGTTTCTCGGGGT
ATGCCGCGCTTGAACTGATACACTTATGGACAAATGGGTGCAAAAGTTGT
CTTGCTTCTCAGTCGGTGTGCAGCTGTGACACGTATCATAGCATCCGGTA
CTACCAGCACTTCTTTGCCCGCTAGTTCACTGGTCCGAGCCCGGCAGGCT
AAACCGGTATGTAGGCCTCAATAGACTGTTTCGCCAACCGACTACCGCAG
TGTACTCTACCGTAACAACTCGGAACACGAAGACCATACCGCTTCCGCCA
AAACCAGGGCCAATTCCACGAGTTAATCTGCTGACTATTAGGCTTGGCTC
GTTCAGTGCGGTACCGGTATACGGGTTGTCGTATTCGTATTTTGTTGCCG
ATACACATACCGTGTGGAGAAGTTCAACGAGACGAGATGTGGCAGTTTCC
GCAGTTTTCGTGGTGATACCGCCAGATTCCTCTCCCTACAGTGTTCCAAG
CAATTTGTATTGGCTAATGCACCATTGACACACGGTAGATGAGAGCGTTA
AGTCCTTTCTTATCGCCAATTCCATCTCCCCACAGTCTCGCCTTGTAGTA
CTGTTTTCCGAGTCTCGTCGAGCGTTCCGCTGCAGTTGTCGCGTAGTAAC
AGTAGTTAGACTCATGCTCCCATCTGTCCTTCTCGAGAAGTTCCTTGCCT
TTCTTTCGAATCGTGCTCGTACCCCACCCCATTCCCCTCGTATTCCGTCA
TGTCGCATCGCAGCAAGCTACACCGTTCGCTCGTTCGGCATCCGCCGTAA
TGAAAAGATCGCGTGCCACGTCACGGTGAGTGCCGGCACCGCCTTCATGA
AGCTGACTTTCGTTACCCCACCGTACACAGTATTGTGCAATTACGGTAGT
CGAGCAATTGTGCGGGTAGTCGAGTGTGGTGGTTGACGTCACAAGCGTAT
AAAATAGTAGGGATAGGTGTCGCCTGCGGTGTAGTCATAGCTCTAGTATG
TTGAACGGTACAAACGTACACACGACGAACGTTTCAATAGCCTTCGTTGT
TGGTTGCCATGTACAGCAGCCTGGCTGTTCATGTCTGCCAGCTCGTACTC
GTAGCGTTATTTTGCTATCTGAGGCAGGATGCTTCAGCCTGCCCTCCCCG
CAGCTCGTTGTATAATATTTTACCTTGACACTTGCGCTATAGCTTTCGGT
ATAGGGCCTAGTTTATAGCTTTTGGGGGAAGCCTCGAGCCTTTCTTCCGT
GACTGCTACTGTTGCCGTTGGTATTTGCTGTGTTTGGTCGCTGCCGAGCT
TCTGGTTGCGGGACCCCCCCCCCCCACTCCATTGTTGAGTTGAGGTATTG
TCACCTGACCTGGTATATATAACGCTATTTGTTGGCGCTCTCGATATGGT
GGCGCAGGTCCGCGGAGAGAAGGCGTTGGAGATCCTTGAGCGAGGGCTTA
AGGTGAAGGAGTACGAGCTTAAGCGCAACAACTTCTCCAACACGGGCAGC
TTTGGCTTCGGAATTCAGGAGCACATCGACCTCGGCCTGAAGTATGACCC
ATCTACCGGTAAGGGCAACTACTTTGTACGAGTAAACAACTATTAATACC
AGTTAGAAACAACTACGTTGACCACATTTGAAACATGACAATAACGAGGA
CACATGTGGAGGCACTATTAATAGGCGTATATTGGTTGCGAAAATCTGTT
TCTGGATTGCGATCGATTGCACTTCATTGCACTTCGGGACGAAACCAAAA
TTTAGATGTCTCGGGTCATTCTGAGAGACCGCTTCTTTTGAAGTATTGGT
ACTGTTTGGCTCTGATTCTGGAGCCGCTGCTGTACTACGTGGAGCATTGG
TGAACAATACGCGCCTGTGGCCTTCCATGCCTGTGTGGATAGACCCACTG
CTGTATGATACCATGGCAAAGGTAAATGTCTTGGGCGAAAACATGACGGC
AGTTGCACTGAGCTTTTGTTGTTTGTGCTCGATCGTGCAATATCAGGTAG
GTTCTTAAACCGAGCAGGTTCAATTCTGAAGGGTTGGTTCGGCTGGGCGT
ATTGCTATTCGTATACGAAGTACTACGTGCATCGAAAACCGAATATGGAA
GTCGCTGACTGTTCACCGGGGCGGGCTCAGAGTAGGCGAACGTGTCGAAA
GACAAAGCGGACTTTAACTGTCTCTTTTCCCAGTCTCGTATATACATGCT
TGGGCTATAGGTGAAAACACGACCGACCTCACCCATTTCTCGGGTTCCGT
TTACTGCACGAGCTCGGTCGGAAGCCATCAACCCTGTGCCCGAGCTACTT
ACCGTTTTAAATATGCGAGAGAAGTACGCAGCAGAAGAATGAGCGTGTTG
GCACCGGGTGCGCTAACGACCCATCTACGTAACCTCGCCCCATCCTATCT
TGCCTCACGTTTCCTGTCCAGGCATCTACGGAATGGACTTTTACGTCGTA
CTCAACAGGCCAGGATACCGCGTGGCGAAGCGCAAGGCGAAGTGTGCCAA
GATCGGTTACCAGCACAAGGTCACCAAGACTGACGCCGTCAAGTGGTTCC
AGGTGTGTACATCAGTAGTTACACGCTCAATAGTAGACGGGTTAGTTTGT
GTGCTGCCACTGGTTGTATTGTGCCAGGTATATTTTTCGAACACTTGGAG
AATAGCGTAGGGGTGATCAGGCCACCAATTCCATTAAATTACAGTATTAC
ATAGTAGTGCAATGTTGCATTCTTAATGTGTTTGGCTGACGCCGTCCCTT
CACCCCTTGTCGCATTCTGTGATCGTTTGCAGGCCAAGTTCGAGGGCATC
GTGATTGGATAAGTCTGGTTGGTTCTACAGTACGTAGACTTGACAGAACT
GTAGCTGTCGACGACTGAGGGACACCTGACAGGAATGGAGGGTCTCCGTT
GAAACATTGGAATAAAAAACACGATAAAACACAAGGAAGGGGCAAGAACC
ATGGAGTGCTACTATTAATAGGCACCCGGAGGCATAACTCCGTTGATCTT
GGCGATAAGCACCGCAAGTGTTGAGTTTGAAGTTGGGACATTTTATGCCA
GCGACATGCGAACTCGAACGAGCTCTCCCTGTTTCGATGCTTGCCACGTG
GCGTCGTTCCTCTCATCCCCCCAGTTGTCTACCGTCATGAACCCGGTTGC
AAGTGATCCAGATAAACGGGCGTATTACTTGCTACAATATACCTGGGTAA
TACCTAGCAGCGTGTACAAAAACACGATACCTCAATACCTGGCGAGTCAT
GCTGAGACTTTTTTCCGGAAGATGGATTAAGTCGGTGTTGTCGCAATTGA
CCGCCGATTTTGCGCGGATGAAAAAGGCGAGTTCGAAAACAGCCCCGTGA
CTGTAACGCTATGCTTACCATTACACTATCCTACTCATGTAGAGGAGGGA
GTAAACAGTACACGATACGTAGGGCCGACCCACATCTCCTGGAGATAACT
AAGCAGTAGACGGGGGAACAGCACGTCAACGCATGTGGTTGACGCTGCGT
TACCGTATTGCCATTAGGGCCTACACGTATCTCGAGAAAGTAGATATACA
GCCCACTTACTGGATTCTCACTTACATAAATACCTGGTATATTGGTGTGT
CGGTGTGTTAGCTGCGTTTTTTGTCTGAAACCTACAGGATCCCTGGGGCG
GAGGGAGCTGTGGACGTTATCTCCTGTAATTTCTCGGACCGACCTGGACC
TGAAAATTGCTGGTCATGCTGTACGTCAATTCGTTGCCCCGAACACAGAT
CTCTGAATGAAGTATAATACATGACATATCCATCCAAAATCGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7342:2508..7252+

>mRNA_M-pyrifera_M_contig7342.17409.1 ID=mRNA_M-pyrifera_M_contig7342.17409.1|Name=mRNA_M-pyrifera_M_contig7342.17409.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=996bp|location=Sequence derived from alignment at M-pyrifera_M_contig7342:2508..7252+ (Macrocystis pyrifera P11B4 male)
ATGAGGGACCTCAAGGTCGACAAGCTGGTGCTGAACTGCTCCGTTGGAGA
GTCGGGTGACAGGCTGACGCGCGCGGCGAAGGTGCTTGAGCAACTTACGG
GCCAGTCTCCTGTCTACTCCAAGGATGAGGGACCTCAAGGTCGACAAGCT
GGTGCTGAACTGCTCCGTTGGAGAGTCGGGTGACAGGCTGACGCGCGCGG
CGAAGGTGCTTGAGCAACTTACGGGCCAGTCTCCTGTCTACTCCAAGGCA
AGCTACACCGTTCGCTCGTTCGGCATCCGCCGTAATGAAAAGATCGCGTG
CCACGTCACGCAAGCTACACCGTTCGCTCGTTCGGCATCCGCCGTAATGA
AAAGATCGCGTGCCACGTCACGGTCCGCGGAGAGAAGGCGTTGGAGATCC
TTGAGCGAGGGCTTAAGGTGAAGGAGTACGAGCTTAAGCGCAACAACTTC
TCCAACACGGGCAGCTTTGGCTTCGGAATTCAGGAGCACATCGACCTCGG
CCTGAAGTATGACCCATCTACCGGTCCGCGGAGAGAAGGCGTTGGAGATC
CTTGAGCGAGGGCTTAAGGTGAAGGAGTACGAGCTTAAGCGCAACAACTT
CTCCAACACGGGCAGCTTTGGCTTCGGAATTCAGGAGCACATCGACCTCG
GCCTGAAGTATGACCCATCTACCGGCATCTACGGAATGGACTTTTACGTC
GTACTCAACAGGCCAGGATACCGCGTGGCGAAGCGCAAGGCGAAGTGTGC
CAAGATCGGTTACCAGCACAAGGTCACCAAGACTGACGCCGTCAAGTGGT
TCCAGGCATCTACGGAATGGACTTTTACGTCGTACTCAACAGGCCAGGAT
ACCGCGTGGCGAAGCGCAAGGCGAAGTGTGCCAAGATCGGTTACCAGCAC
AAGGTCACCAAGACTGACGCCGTCAAGTGGTTCCAGGCCAAGTTCGAGGG
CATCGTGATTGGATAAGCCAAGTTCGAGGGCATCGTGATTGGATAA
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