mRNA_M-pyrifera_M_contig72915.17319.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72915.17319.1
Unique NamemRNA_M-pyrifera_M_contig72915.17319.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A2E7KEQ6_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KEQ6_9PLAN)

HSP 1 Score: 335 bits (860), Expect = 2.430e-111
Identity = 181/182 (99.45%), Postives = 181/182 (99.45%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARVK 546
            DLSTTNLLQRKAALKKLS AKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARVK
Sbjct:  331 DLSTTNLLQRKAALKKLSLAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARVK 512          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A518A4W2_9PLAN (Uncharacterized protein n=3 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518A4W2_9PLAN)

HSP 1 Score: 277 bits (709), Expect = 1.330e-88
Identity = 146/182 (80.22%), Postives = 167/182 (91.76%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARVK 546
            DLSTT+L QRKAALKKLS+AKP +KNPEV+RILI +LESKDIT+ KDASEALVVWS KE++PAMI+LLPE+NIL Q N+MQAILQ QTDEG +AVAGLL DR +AH+AGNQLI+YGS AE+AVLEQL P+DFLTTVNVMRVLKEIGTEKSLKKIDEVTR T+N++FRFQAASTV+AIE RVK
Sbjct:  330 DLSTTDLFQRKAALKKLSEAKPKEKNPEVSRILIRILESKDITVAKDASEALVVWSNKEDVPAMIKLLPEINILAQPNLMQAILQQQTDEGVQAVAGLLKDRVKAHRAGNQLIEYGSGAEEAVLEQLDPDDFLTTVNVMRVLKEIGTEKSLKKIDEVTRNTENRNFRFQAASTVKAIEDRVK 511          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A517V9P5_9PLAN (Uncharacterized protein n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V9P5_9PLAN)

HSP 1 Score: 236 bits (602), Expect = 1.440e-72
Identity = 126/181 (69.61%), Postives = 153/181 (84.53%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARV 543
            DL+T ++ +RKAAL+KLSQAKP + N E++ ILIG+L SKDIT+V DAS ALVVWS+K++IPAM ++L EVNILGQENVM+AIL+ +T EG EAVAGLL D  +AH A  +LI+YGS AEDAVLEQL P+ F+  VNV+RVLKEIGTEKSLKKI+EVTRTT   SFRFQAASTV+AIEAR+
Sbjct:  331 DLATKDIFKRKAALQKLSQAKPEQPNREISGILIGVLNSKDITVVLDASRALVVWSSKDDIPAMTEVLSEVNILGQENVMEAILKHETPEGVEAVAGLLKDPVKAHHASKKLIEYGSGAEDAVLEQLDPDQFIVLVNVLRVLKEIGTEKSLKKIEEVTRTTTKNSFRFQAASTVKAIEARI 511          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A355GJ33_9PLAN (Uncharacterized protein n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A355GJ33_9PLAN)

HSP 1 Score: 231 bits (590), Expect = 8.620e-70
Identity = 125/181 (69.06%), Postives = 153/181 (84.53%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARV 543
            +LST+NLL+RKAAL+KLSQ KP + N +++ ILIG+LESKDIT+V+DAS ALVVWSTKE+IPAM  LL EVNILGQE+VM+AILQ +T EG  AVA LL +  +AH A  +LI+YGS AEDAVL+QL P+ F+  VNV RVLKEIGTEKSLKKI+EV ++TKN +FRFQAASTV+AIEAR+
Sbjct:  435 ELSTSNLLKRKAALQKLSQVKPAEGNRDISGILIGILESKDITVVQDASRALVVWSTKEDIPAMTGLLKEVNILGQESVMEAILQHKTPEGVTAVAELLKEPIKAHNASKKLIEYGSGAEDAVLKQLDPDQFIVLVNVFRVLKEIGTEKSLKKIEEVNQSTKNNNFRFQAASTVKAIEARL 615          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A517RE26_9PLAN (Uncharacterized protein n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RE26_9PLAN)

HSP 1 Score: 226 bits (575), Expect = 1.600e-68
Identity = 119/181 (65.75%), Postives = 150/181 (82.87%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARV 543
            DL+T N+L+RKAALKKLSQAKP ++NPEV++I+IG+L SKDIT+V DASEALVVWSTK ++PAMI++LPEVNILG EN+ +AIL+ QT EG  AVA L+ D  + H+   +LI YGS AE AVLEQL P +F+  V V+RVLKEIGTEK+LKKI+E+ RTT N SF+FQ A+TV+AIEAR+
Sbjct:  329 DLATKNILKRKAALKKLSQAKPKQENPEVSQIIIGVLNSKDITVVADASEALVVWSTKADVPAMIEILPEVNILGLENIAEAILKHQTPEGVNAVAKLMNDPIKGHKISPKLIAYGSGAEGAVLEQLDPSNFVVLVGVLRVLKEIGTEKTLKKIEELKRTTDNASFQFQTAATVKAIEARL 509          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A6CDP9_9PLAN (Uncharacterized protein n=6 Tax=Planctomycetaceae TaxID=126 RepID=A6CDP9_9PLAN)

HSP 1 Score: 226 bits (575), Expect = 1.930e-68
Identity = 120/181 (66.30%), Postives = 150/181 (82.87%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARV 543
            DLST N+L+RKAAL+KLSQ KP ++NP+++ ILIG+LESKDIT+V+DAS AL VWST+ +IPAM  LL EVNILGQ +VM+AIL+ +T EG  AVA LL D  +AH A  +LI+YGS AEDAVL+QL P+ F+  VNV RVLKEIGTEKSLKKI+EV ++T N +FRFQAASTV+AIE+R+
Sbjct:  341 DLSTKNVLKRKAALQKLSQTKPDQENPDISGILIGILESKDITVVQDASRALAVWSTRADIPAMTGLLKEVNILGQASVMEAILKHETPEGVTAVAELLKDPIKAHNASKKLIEYGSGAEDAVLKQLDPDQFIVLVNVFRVLKEIGTEKSLKKIEEVNQSTTNNNFRFQAASTVKAIESRI 521          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A518IAT0_9PLAN (Uncharacterized protein n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518IAT0_9PLAN)

HSP 1 Score: 216 bits (549), Expect = 1.200e-64
Identity = 115/181 (63.54%), Postives = 149/181 (82.32%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEARV 543
            DL++ N+L+RKAALKKLSQAKP K   +V++ILI +L SKDI++V DASEALVVWSTK++IPAMI++L +VNILG +NV +AIL+ +T EG EAVA L+ D  + H+   +LI YGS AEDAVLEQL P +F+  V V+RVLKEIGTEK+LKKI+E+ RTT N+SF+FQ A+TV+AIEAR+
Sbjct:  330 DLASKNILKRKAALKKLSQAKPKKDKQQVSQILICVLNSKDISVVADASEALVVWSTKDDIPAMIEVLSDVNILGLDNVAEAILKHKTPEGIEAVAKLMKDPVKGHRISTKLIAYGSGAEDAVLEQLDPSNFVVLVGVLRVLKEIGTEKTLKKIEEIKRTTDNRSFQFQTAATVKAIEARL 510          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A517WW96_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WW96_9PLAN)

HSP 1 Score: 213 bits (541), Expect = 2.300e-63
Identity = 111/180 (61.67%), Postives = 150/180 (83.33%), Query Frame = 1
Query:    1 DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEAR 540
            DL+TTN+L+RKAALKKLS++KPT++NPE+++ILI +L+S DI +V DAS+ALVVWSTKE++PA+I+LL +VNILG + +M +IL+ QT EG  AVA LL +  ++H A  +LI YGS AE+AVL+QL P + LT V V  VLKEIGTEKSLKKIDE++R+TKN++F+F AA+ V+AI+AR
Sbjct:  343 DLATTNVLKRKAALKKLSESKPTQENPEISKILIKVLKSGDIIVVADASKALVVWSTKEDVPALIELLSQVNILGADAIMDSILKHQTTEGVLAVAKLLKEPLKSHNASKKLIAYGSGAEEAVLDQLDPSNLLTLVRVFSVLKEIGTEKSLKKIDEISRSTKNQNFKFHAAAAVKAIKAR 522          
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Match: A0A2D6SS63_9PLAN (Uncharacterized protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A2D6SS63_9PLAN)

HSP 1 Score: 92.0 bits (227), Expect = 1.960e-18
Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = 1
Query:   49 LSQAKPTKKNPEVARILIGLLESKDITIVKDASEALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLCDRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKSLKKIDEVTRTTKNKSFRFQAASTVRAIEAR 540
            LSQ  P + NPE+AR L  +L     ++   A++AL  W T++ +P M+  L   + + + ++M A+  L+ ++  +A+A  L  +S  H A   L K+G  AE AV+  L  ++++T +   R+LK++GT KSL  +  ++ + KN   +  A   V AI+ R
Sbjct:  335 LSQKGPDQPNPEIARALATILAGDKESLHFTAAKALEKWGTQQVVPEMVDALSNSSTIVRHSMMTALANLKAEKAIKAIAAALAKQSDRHHASKVLRKFGPAAESAVVGHLKSDEWVTRLEACRILKDVGTVKSLDALGAISSSDKNALVKRTAKDAVEAIKKR 498          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72915.17319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2E7KEQ6_9PLAN2.430e-11199.45Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518A4W2_9PLAN1.330e-8880.22Uncharacterized protein n=3 Tax=Gimesia panareensi... [more]
A0A517V9P5_9PLAN1.440e-7269.61Uncharacterized protein n=1 Tax=Gimesia algae TaxI... [more]
A0A355GJ33_9PLAN8.620e-7069.06Uncharacterized protein n=2 Tax=Planctomycetaceae ... [more]
A0A517RE26_9PLAN1.600e-6865.75Uncharacterized protein n=1 Tax=Gimesia alba TaxID... [more]
A6CDP9_9PLAN1.930e-6866.30Uncharacterized protein n=6 Tax=Planctomycetaceae ... [more]
A0A518IAT0_9PLAN1.200e-6463.54Uncharacterized protein n=1 Tax=Gimesia fumaroli T... [more]
A0A517WW96_9PLAN2.300e-6361.67Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
A0A2D6SS63_9PLAN1.960e-1831.71Uncharacterized protein n=1 Tax=Planctomycetaceae ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72915contigM-pyrifera_M_contig72915:3..551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score225.7
Seed ortholog evalue1.7e-56
Seed eggNOG ortholog344747.PM8797T_01309
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K01387
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lyase activity
EggNOG OGs2J4JA@203682,COG1413@1,COG1413@2
EC3.4.11.2,3.4.24.3
COG Functional cat.C
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko02042
Exons1
Model size549
Cds size549
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.5079558-CDS-M-pyrifera_M_contig72915:2..5511622816626.5079558-CDS-M-pyrifera_M_contig72915:2..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72915 3..551 +
1692278085.0435648-CDS-M-pyrifera_M_contig72915:2..5511692278085.0435648-CDS-M-pyrifera_M_contig72915:2..551Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72915 3..551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72915.17319.1prot_M-pyrifera_M_contig72915.17319.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72915 3..551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72915.17319.1

>prot_M-pyrifera_M_contig72915.17319.1 ID=prot_M-pyrifera_M_contig72915.17319.1|Name=mRNA_M-pyrifera_M_contig72915.17319.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
DLSTTNLLQRKAALKKLSQAKPTKKNPEVARILIGLLESKDITIVKDASE
ALVVWSTKENIPAMIQLLPEVNILGQENVMQAILQLQTDEGTEAVAGLLC
DRSRAHQAGNQLIKYGSDAEDAVLEQLAPEDFLTTVNVMRVLKEIGTEKS
LKKIDEVTRTTKNKSFRFQAASTVRAIEARVK*
back to top

mRNA from alignment at M-pyrifera_M_contig72915:3..551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72915.17319.1 ID=mRNA_M-pyrifera_M_contig72915.17319.1|Name=mRNA_M-pyrifera_M_contig72915.17319.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig72915:3..551+ (Macrocystis pyrifera P11B4 male)
GATCTGTCGACGACGAATCTGCTGCAGCGTAAAGCGGCTCTGAAAAAACT GAGTCAGGCGAAACCGACGAAGAAAAATCCGGAAGTGGCGCGGATCCTGA TTGGACTCCTGGAGAGTAAAGACATCACCATCGTTAAGGATGCTTCCGAA GCTCTGGTAGTCTGGTCCACCAAAGAGAATATACCCGCCATGATTCAACT GTTGCCCGAAGTTAATATTCTGGGACAGGAAAACGTGATGCAGGCTATTT TGCAGCTTCAGACCGATGAGGGGACAGAGGCGGTTGCTGGACTGTTGTGT GATCGGTCCAGAGCTCATCAGGCGGGGAATCAGCTGATTAAGTACGGCAG TGATGCAGAGGATGCGGTACTGGAACAGCTTGCCCCTGAAGATTTTCTGA CAACGGTGAACGTGATGCGCGTCTTGAAAGAGATTGGCACGGAAAAGAGT CTGAAGAAAATCGACGAAGTGACACGCACCACGAAGAATAAAAGTTTCCG TTTTCAGGCTGCCTCGACGGTCAGAGCCATCGAGGCGCGCGTCAAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72915:3..551+

>mRNA_M-pyrifera_M_contig72915.17319.1 ID=mRNA_M-pyrifera_M_contig72915.17319.1|Name=mRNA_M-pyrifera_M_contig72915.17319.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig72915:3..551+ (Macrocystis pyrifera P11B4 male)
GATCTGTCGACGACGAATCTGCTGCAGCGTAAAGCGGCTCTGAAAAAACT
GAGTCAGGCGAAACCGACGAAGAAAAATCCGGAAGTGGCGCGGATCCTGA
TTGGACTCCTGGAGAGTAAAGACATCACCATCGTTAAGGATGCTTCCGAA
GCTCTGGTAGTCTGGTCCACCAAAGAGAATATACCCGCCATGATTCAACT
GTTGCCCGAAGTTAATATTCTGGGACAGGAAAACGTGATGCAGGCTATTT
TGCAGCTTCAGACCGATGAGGGGACAGAGGCGGTTGCTGGACTGTTGTGT
GATCGGTCCAGAGCTCATCAGGCGGGGAATCAGCTGATTAAGTACGGCAG
TGATGCAGAGGATGCGGTACTGGAACAGCTTGCCCCTGAAGATTTTCTGA
CAACGGTGAACGTGATGCGCGTCTTGAAAGAGATTGGCACGGAAAAGAGT
CTGAAGAAAATCGACGAAGTGACACGCACCACGAAGAATAAAAGTTTCCG
TTTTCAGGCTGCCTCGACGGTCAGAGCCATCGAGGCGCGCGTCAAGTAGG
ATCTGTCGACGACGAATCTGCTGCAGCGTAAAGCGGCTCTGAAAAAACTG
AGTCAGGCGAAACCGACGAAGAAAAATCCGGAAGTGGCGCGGATCCTGAT
TGGACTCCTGGAGAGTAAAGACATCACCATCGTTAAGGATGCTTCCGAAG
CTCTGGTAGTCTGGTCCACCAAAGAGAATATACCCGCCATGATTCAACTG
TTGCCCGAAGTTAATATTCTGGGACAGGAAAACGTGATGCAGGCTATTTT
GCAGCTTCAGACCGATGAGGGGACAGAGGCGGTTGCTGGACTGTTGTGTG
ATCGGTCCAGAGCTCATCAGGCGGGGAATCAGCTGATTAAGTACGGCAGT
GATGCAGAGGATGCGGTACTGGAACAGCTTGCCCCTGAAGATTTTCTGAC
AACGGTGAACGTGATGCGCGTCTTGAAAGAGATTGGCACGGAAAAGAGTC
TGAAGAAAATCGACGAAGTGACACGCACCACGAAGAATAAAAGTTTCCGT
TTTCAGGCTGCCTCGACGGTCAGAGCCATCGAGGCGCGCGTCAAGTAG
back to top