mRNA_M-pyrifera_M_contig72880.17308.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72880.17308.1
Unique NamemRNA_M-pyrifera_M_contig72880.17308.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72880.17308.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72880contigM-pyrifera_M_contig72880:184..1110 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size927
Cds size906
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.9967344-UTR-M-pyrifera_M_contig72880:183..2041622816625.9967344-UTR-M-pyrifera_M_contig72880:183..204Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72880 184..204 +
1692278084.806652-UTR-M-pyrifera_M_contig72880:183..2041692278084.806652-UTR-M-pyrifera_M_contig72880:183..204Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72880 184..204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816626.0081444-CDS-M-pyrifera_M_contig72880:204..11101622816626.0081444-CDS-M-pyrifera_M_contig72880:204..1110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72880 205..1110 +
1692278084.8175385-CDS-M-pyrifera_M_contig72880:204..11101692278084.8175385-CDS-M-pyrifera_M_contig72880:204..1110Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72880 205..1110 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72880.17308.1prot_M-pyrifera_M_contig72880.17308.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72880 205..1110 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72880.17308.1

>prot_M-pyrifera_M_contig72880.17308.1 ID=prot_M-pyrifera_M_contig72880.17308.1|Name=mRNA_M-pyrifera_M_contig72880.17308.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=302bp
MWFQKAADQGDARAQTSLGRMYRDGQGVEKNDATAVKWYRKAAEQGHASA
QTSLGFMYSNGQGVEKNDATAAMWYQKAAEQGDAEAQYYLGWIYEFGQGV
EKNDATAVKWYRKAAVQGDADAQTNLGCMYRDGQGVEKNDATAVKWFQKA
AEQGHAEAQFRVGRMFRKGYGETKNDKAAVKWYQKAADQGHAEAQYFLGW
MYHNGQGVEKNDETAVKWFQKAAEQGHAEAQYFLGWMYHNGQGVEKNDET
AVKWYRKAAEQGDAEAQTNLGVMYESGQGVEKNDATAVKWYRRAAEQGHA
RG
back to top

mRNA from alignment at M-pyrifera_M_contig72880:184..1110+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72880.17308.1 ID=mRNA_M-pyrifera_M_contig72880.17308.1|Name=mRNA_M-pyrifera_M_contig72880.17308.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=927bp|location=Sequence derived from alignment at M-pyrifera_M_contig72880:184..1110+ (Macrocystis pyrifera P11B4 male)
AAAAATGATGCAACTGCCGCGATGTGGTTCCAAAAAGCAGCAGACCAGGG
GGACGCTCGCGCGCAAACCAGCTTAGGTCGTATGTATAGGGATGGTCAGG
GCGTTGAGAAAAATGATGCAACTGCCGTTAAGTGGTACCGGAAAGCGGCA
GAGCAGGGGCACGCTAGCGCGCAAACCAGCTTAGGTTTTATGTATAGTAA
TGGCCAGGGCGTTGAGAAAAATGATGCAACTGCCGCGATGTGGTATCAAA
AAGCAGCAGAGCAGGGGGACGCTGAAGCGCAATACTATTTAGGTTGGATT
TATGAGTTTGGTCAGGGCGTTGAGAAAAATGATGCAACTGCCGTTAAGTG
GTACCGGAAAGCAGCAGTCCAGGGGGACGCTGACGCGCAAACCAACTTAG
GTTGTATGTATAGGGATGGTCAGGGCGTTGAGAAAAATGATGCAACTGCC
GTTAAGTGGTTTCAAAAAGCGGCAGAGCAGGGGCACGCTGAGGCGCAATT
CCGCGTGGGCCGTATGTTCAGAAAAGGCTACGGTGAGACCAAAAATGATA
AAGCCGCCGTTAAGTGGTATCAAAAAGCAGCAGACCAGGGGCACGCGGAA
GCGCAATATTTCTTAGGTTGGATGTATCACAATGGCCAAGGTGTTGAAAA
AAATGATGAGACCGCCGTTAAGTGGTTTCAAAAAGCGGCAGAGCAGGGGC
ACGCGGAAGCGCAATATTTCTTAGGTTGGATGTATCACAATGGCCAAGGC
GTTGAGAAAAATGATGAGACTGCCGTTAAGTGGTACCGGAAAGCGGCAGA
GCAGGGGGACGCTGAGGCGCAAACCAACTTAGGTGTGATGTATGAGAGTG
GCCAGGGCGTTGAGAAAAATGATGCAACTGCCGTTAAGTGGTACCGGAGA
GCGGCAGAGCAGGGGCACGCTCGCGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72880:184..1110+

>mRNA_M-pyrifera_M_contig72880.17308.1 ID=mRNA_M-pyrifera_M_contig72880.17308.1|Name=mRNA_M-pyrifera_M_contig72880.17308.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1812bp|location=Sequence derived from alignment at M-pyrifera_M_contig72880:184..1110+ (Macrocystis pyrifera P11B4 male)
ATGTGGTTCCAAAAAGCAGCAGACCAGGGGGACGCTCGCGCGCAAACCAG
CTTAGGTCGTATGTATAGGGATGGTCAGGGCGTTGAGAAAAATGATGCAA
CTGCCGTTAAGTGGTACCGGAAAGCGGCAGAGCAGGGGCACGCTAGCGCG
CAAACCAGCTTAGGTTTTATGTATAGTAATGGCCAGGGCGTTGAGAAAAA
TGATGCAACTGCCGCGATGTGGTATCAAAAAGCAGCAGAGCAGGGGGACG
CTGAAGCGCAATACTATTTAGGTTGGATTTATGAGTTTGGTCAGGGCGTT
GAGAAAAATGATGCAACTGCCGTTAAGTGGTACCGGAAAGCAGCAGTCCA
GGGGGACGCTGACGCGCAAACCAACTTAGGTTGTATGTATAGGGATGGTC
AGGGCGTTGAGAAAAATGATGCAACTGCCGTTAAGTGGTTTCAAAAAGCG
GCAGAGCAGGGGCACGCTGAGGCGCAATTCCGCGTGGGCCGTATGTTCAG
AAAAGGCTACGGTGAGACCAAAAATGATAAAGCCGCCGTTAAGTGGTATC
AAAAAGCAGCAGACCAGGGGCACGCGGAAGCGCAATATTTCTTAGGTTGG
ATGTATCACAATGGCCAAGGTGTTGAAAAAAATGATGAGACCGCCGTTAA
GTGGTTTCAAAAAGCGGCAGAGCAGGGGCACGCGGAAGCGCAATATTTCT
TAGGTTGGATGTATCACAATGGCCAAGGCGTTGAGAAAAATGATGAGACT
GCCGTTAAGTGGTACCGGAAAGCGGCAGAGCAGGGGGACGCTGAGGCGCA
AACCAACTTAGGTGTGATGTATGAGAGTGGCCAGGGCGTTGAGAAAAATG
ATGCAACTGCCGTTAAGTGGTACCGGAGAGCGGCAGAGCAGGGGCACGCT
CGCGGGATGTGGTTCCAAAAAGCAGCAGACCAGGGGGACGCTCGCGCGCA
AACCAGCTTAGGTCGTATGTATAGGGATGGTCAGGGCGTTGAGAAAAATG
ATGCAACTGCCGTTAAGTGGTACCGGAAAGCGGCAGAGCAGGGGCACGCT
AGCGCGCAAACCAGCTTAGGTTTTATGTATAGTAATGGCCAGGGCGTTGA
GAAAAATGATGCAACTGCCGCGATGTGGTATCAAAAAGCAGCAGAGCAGG
GGGACGCTGAAGCGCAATACTATTTAGGTTGGATTTATGAGTTTGGTCAG
GGCGTTGAGAAAAATGATGCAACTGCCGTTAAGTGGTACCGGAAAGCAGC
AGTCCAGGGGGACGCTGACGCGCAAACCAACTTAGGTTGTATGTATAGGG
ATGGTCAGGGCGTTGAGAAAAATGATGCAACTGCCGTTAAGTGGTTTCAA
AAAGCGGCAGAGCAGGGGCACGCTGAGGCGCAATTCCGCGTGGGCCGTAT
GTTCAGAAAAGGCTACGGTGAGACCAAAAATGATAAAGCCGCCGTTAAGT
GGTATCAAAAAGCAGCAGACCAGGGGCACGCGGAAGCGCAATATTTCTTA
GGTTGGATGTATCACAATGGCCAAGGTGTTGAAAAAAATGATGAGACCGC
CGTTAAGTGGTTTCAAAAAGCGGCAGAGCAGGGGCACGCGGAAGCGCAAT
ATTTCTTAGGTTGGATGTATCACAATGGCCAAGGCGTTGAGAAAAATGAT
GAGACTGCCGTTAAGTGGTACCGGAAAGCGGCAGAGCAGGGGGACGCTGA
GGCGCAAACCAACTTAGGTGTGATGTATGAGAGTGGCCAGGGCGTTGAGA
AAAATGATGCAACTGCCGTTAAGTGGTACCGGAGAGCGGCAGAGCAGGGG
CACGCTCGCGGG
back to top