mRNA_M-pyrifera_M_contig72807.17293.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72807.17293.1
Unique NamemRNA_M-pyrifera_M_contig72807.17293.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A5A8CXX3_CAFRO (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CXX3_CAFRO)

HSP 1 Score: 85.5 bits (210), Expect = 2.320e-18
Identity = 41/82 (50.00%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            R+ +LIR+FR H +DTGS RVQVA+LTE++ AL  H   +  DK +KR L M V +RR+ L +LM+SD++ YR +IR++G +
Sbjct:  145 RKSELIRKFRTHTYDTGSARVQVAILTERVEALQRHLSGNNHDKSSKRMLQMLVHRRRKMLSFLMESDFAGYRILIREMGLR 226          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: UPI00200EF926 (30S ribosomal protein S15 n=1 Tax=Conexibacter sp. S30A1 TaxID=2937800 RepID=UPI00200EF926)

HSP 1 Score: 79.7 bits (195), Expect = 8.430e-18
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   10 QLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            QLI RF     DTG   VQVALLTE+I  L EH + HKKD  ++R L M V +RRRFLRYL +SD   YRA++++LG +
Sbjct:   10 QLIERFGAGPQDTGKTEVQVALLTERINQLTEHLRTHKKDHHSRRGLLMLVGQRRRFLRYLERSDLERYRALVKELGLR 88          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A7V9T4M3_9ACTN (30S ribosomal protein S15 n=1 Tax=Solirubrobacterales bacterium TaxID=1909295 RepID=A0A7V9T4M3_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 1.700e-17
Identity = 43/82 (52.44%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            R+ ++I RF     DTGS RVQVALLTE+I  L EH +AH KD  ++R L M V +RRR LRYL ++D  +YRA+I +LG +
Sbjct:    7 RKAEIITRFGSDDRDTGSTRVQVALLTERINGLTEHLRAHGKDHHSRRGLLMLVGQRRRLLRYLQRNDVEAYRALIAELGLR 88          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A1I4KAU4_9BACI (30S ribosomal protein S15 n=4 Tax=Salibacterium TaxID=1884429 RepID=A0A1I4KAU4_9BACI)

HSP 1 Score: 77.8 bits (190), Expect = 4.850e-17
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            R+ +L++ F+ H  DTGS  VQ+A+LTEQIT LN+H + HKKD  ++R L   V KRR  L +L K D + YR++I+ LG +
Sbjct:    7 RKQELVQEFKTHENDTGSPEVQIAILTEQITTLNQHLRDHKKDHHSRRGLLKMVGKRRNLLTFLRKKDVTRYRSLIKQLGLR 88          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A812Q0U9_9DINO (RpsO protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812Q0U9_9DINO)

HSP 1 Score: 81.3 bits (199), Expect = 5.330e-17
Identity = 39/82 (47.56%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            ++HQLI +F+ H FDTGS RVQVALLT +I A+  H  A  +D   KR L   V++RR+ ++Y++K DY++YR +I++L  K
Sbjct:  109 KKHQLINKFKTHTFDTGSSRVQVALLTARIQAMTAHLAASPRDSKGKRTLQSLVARRRQLMQYMLKHDYANYRVIIKELNLK 190          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A366EHE1_9BACI (30S ribosomal protein S15 n=2 Tax=Paraliobacillus TaxID=200903 RepID=A0A366EHE1_9BACI)

HSP 1 Score: 77.4 bits (189), Expect = 6.890e-17
Identity = 41/82 (50.00%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            R++++I  F+ H  DTGS  VQ+A+LTE+IT LNEH + HKKD  ++R L   V KRR  L YL   D + YR VIR LG +
Sbjct:    7 RKNEIINEFKTHDNDTGSPEVQIAVLTEEITKLNEHLREHKKDHHSRRGLLKMVGKRRNLLTYLRNKDITRYREVIRKLGLR 88          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A5B8UCU8_9ACTN (30S ribosomal protein S15 n=3 Tax=Actinobacteria TaxID=201174 RepID=A0A5B8UCU8_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 9.270e-17
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            R+ +++ +F ++  DTGS RVQVALLT +I  L EH ++HKKD  ++R L M V +RRR L YL K D   YRA+I +LG +
Sbjct:    5 RKQEIVDKFGDNAEDTGSTRVQVALLTARINDLTEHLRSHKKDHHSRRGLLMLVGQRRRLLNYLAKKDLEGYRALIAELGLR 86          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A0A5GPF7_9BACI (30S ribosomal protein S15 n=1 Tax=Pontibacillus halophilus JSM 076056 = DSM 19796 TaxID=1385510 RepID=A0A0A5GPF7_9BACI)

HSP 1 Score: 77.0 bits (188), Expect = 9.770e-17
Identity = 40/82 (48.78%), Postives = 56/82 (68.29%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            R++++I  F++H  DTGS  VQ+A+LTEQIT LNEH + HK+D  ++R L   V KRR  L YL  +D + YR VI+ LG +
Sbjct:    7 RKNEIISEFKQHDNDTGSPEVQIAVLTEQITKLNEHLRTHKQDHHSRRGLLKMVGKRRNLLNYLRNNDITRYRDVIQKLGLR 88          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A7K0QMM7_9ACTN (30S ribosomal protein S15 n=2 Tax=root TaxID=1 RepID=A0A7K0QMM7_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 1.000e-16
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   10 QLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            +++ +F E+  DTGS RVQ+ALLT++I  L EH ++HKKD  ++R L M V +RRR L YL K D   YRA++ +LG +
Sbjct:   11 EIVEKFGENAQDTGSTRVQIALLTQRINDLTEHLRSHKKDHASRRGLLMLVGQRRRLLNYLQKRDLEGYRALVAELGLR 89          
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Match: A0A1I3Y7N0_HALDA (30S ribosomal protein S15 n=24 Tax=Bacillaceae TaxID=186817 RepID=A0A1I3Y7N0_HALDA)

HSP 1 Score: 76.6 bits (187), Expect = 1.390e-16
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1
Query:    1 RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRLAMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK 246
            R+ +LI  ++ H  DTGS  VQ+A+LTEQIT LNEH +AHK+D  ++R L   V KRR  L YL   D + YR +I+ LG +
Sbjct:    7 RKQELISEYKTHDNDTGSPEVQIAVLTEQITTLNEHLRAHKQDHHSRRGLLKMVGKRRNLLNYLRNKDITRYRELIKSLGLR 88          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72807.17293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8CXX3_CAFRO2.320e-1850.00Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]
UPI00200EF9268.430e-1854.4330S ribosomal protein S15 n=1 Tax=Conexibacter sp.... [more]
A0A7V9T4M3_9ACTN1.700e-1752.4430S ribosomal protein S15 n=1 Tax=Solirubrobactera... [more]
A0A1I4KAU4_9BACI4.850e-1747.5630S ribosomal protein S15 n=4 Tax=Salibacterium Ta... [more]
A0A812Q0U9_9DINO5.330e-1747.56RpsO protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A366EHE1_9BACI6.890e-1750.0030S ribosomal protein S15 n=2 Tax=Paraliobacillus ... [more]
A0A5B8UCU8_9ACTN9.270e-1748.7830S ribosomal protein S15 n=3 Tax=Actinobacteria T... [more]
A0A0A5GPF7_9BACI9.770e-1748.7830S ribosomal protein S15 n=1 Tax=Pontibacillus ha... [more]
A0A7K0QMM7_9ACTN1.000e-1648.1030S ribosomal protein S15 n=2 Tax=root TaxID=1 Rep... [more]
A0A1I3Y7N0_HALDA1.390e-1648.7830S ribosomal protein S15 n=24 Tax=Bacillaceae Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72807contigM-pyrifera_M_contig72807:301..671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score81.6
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog1029718.SFBM_0735
Preferred namerpsO
KEGG koko:K02956
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0031123,GO:0031124,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
EggNOG OGs1VA5C@1239,24MRM@186801,36KHC@31979,COG0184@1,COG0184@2
Ec32 ortholog descriptionS15/NS1, RNA-binding
Ec32 orthologEc-14_003560.1
COG Functional cat.J
Best tax levelClostridiaceae
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816625.1448925-CDS-M-pyrifera_M_contig72807:300..3671622816625.1448925-CDS-M-pyrifera_M_contig72807:300..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72807 301..367 +
1692278084.310231-CDS-M-pyrifera_M_contig72807:300..3671692278084.310231-CDS-M-pyrifera_M_contig72807:300..367Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72807 301..367 +
1622816625.1589322-CDS-M-pyrifera_M_contig72807:492..6711622816625.1589322-CDS-M-pyrifera_M_contig72807:492..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72807 493..671 +
1692278084.323785-CDS-M-pyrifera_M_contig72807:492..6711692278084.323785-CDS-M-pyrifera_M_contig72807:492..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72807 493..671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72807.17293.1prot_M-pyrifera_M_contig72807.17293.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72807 301..671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72807.17293.1

>prot_M-pyrifera_M_contig72807.17293.1 ID=prot_M-pyrifera_M_contig72807.17293.1|Name=mRNA_M-pyrifera_M_contig72807.17293.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
RRHQLIRRFREHLFDTGSVRVQVALLTEQITALNEHTQAHKKDKDAKRRL
AMAVSKRRRFLRYLMKSDYSSYRAVIRDLGFK
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mRNA from alignment at M-pyrifera_M_contig72807:301..671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72807.17293.1 ID=mRNA_M-pyrifera_M_contig72807.17293.1|Name=mRNA_M-pyrifera_M_contig72807.17293.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=371bp|location=Sequence derived from alignment at M-pyrifera_M_contig72807:301..671+ (Macrocystis pyrifera P11B4 male)
CGACGCCACCAGTTGATTCGACGATTCAGAGAGCACCTCTTTGACACTGG ATCAGTGCGAGTACAAGGTATGTGTGGTTCGATGGTGGGTTTTGGTTGTG TGGGGAGGGACGGGAGTGGTTTGAGTTGAAAGGGTTTGGGGAGGAGAGAG TTGTGGGGAGAGTTGTGGGGAGTTTGGAGTTTTTTCTTGCAGTGGCATTG TTGACGGAGCAAATTACGGCGTTGAATGAGCACACACAAGCTCACAAGAA GGACAAAGATGCCAAACGAAGGCTTGCGATGGCCGTTTCCAAACGACGCC GCTTCCTGCGATACTTGATGAAAAGTGACTACTCGAGTTACCGTGCAGTG ATTCGGGACCTCGGATTCAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72807:301..671+

>mRNA_M-pyrifera_M_contig72807.17293.1 ID=mRNA_M-pyrifera_M_contig72807.17293.1|Name=mRNA_M-pyrifera_M_contig72807.17293.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig72807:301..671+ (Macrocystis pyrifera P11B4 male)
CGACGCCACCAGTTGATTCGACGATTCAGAGAGCACCTCTTTGACACTGG
ATCAGTGCGAGTACAAGCGACGCCACCAGTTGATTCGACGATTCAGAGAG
CACCTCTTTGACACTGGATCAGTGCGAGTACAAGTGGCATTGTTGACGGA
GCAAATTACGGCGTTGAATGAGCACACACAAGCTCACAAGAAGGACAAAG
ATGCCAAACGAAGGCTTGCGATGGCCGTTTCCAAACGACGCCGCTTCCTG
CGATACTTGATGAAAAGTGACTACTCGAGTTACCGTGCAGTGATTCGGGA
CCTCGGATTCAAATGGCATTGTTGACGGAGCAAATTACGGCGTTGAATGA
GCACACACAAGCTCACAAGAAGGACAAAGATGCCAAACGAAGGCTTGCGA
TGGCCGTTTCCAAACGACGCCGCTTCCTGCGATACTTGATGAAAAGTGAC
TACTCGAGTTACCGTGCAGTGATTCGGGACCTCGGATTCAAA
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