mRNA_M-pyrifera_M_contig72790.17287.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72790.17287.1
Unique NamemRNA_M-pyrifera_M_contig72790.17287.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: E3W0M5_PRUPE (DNA-directed RNA polymerase subunit alpha n=72 Tax=fabids TaxID=91835 RepID=E3W0M5_PRUPE)

HSP 1 Score: 449 bits (1154), Expect = 5.760e-158
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 660
            SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI
Sbjct:  107 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A1V0IH23_9ROSA (DNA-directed RNA polymerase subunit alpha n=22 Tax=Cotoneaster TaxID=36607 RepID=A0A1V0IH23_9ROSA)

HSP 1 Score: 432 bits (1110), Expect = 3.450e-151
Identity = 210/220 (95.45%), Postives = 217/220 (98.64%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 660
            SIC+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKVTLPLFT+H RLAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMK+KHFRIEDVKHILNILEI
Sbjct:  107 SICVKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELIPRVYNCLKRSNIHTLLDLLNNSQEDLMKMKHFRIEDVKHILNILEI 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A649ZBV0_9ROSA (DNA-directed RNA polymerase subunit alpha n=2 Tax=Maleae TaxID=721813 RepID=A0A649ZBV0_9ROSA)

HSP 1 Score: 432 bits (1110), Expect = 3.450e-151
Identity = 210/219 (95.89%), Postives = 216/219 (98.63%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILE 657
            SIC+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKVTLPLFT+H RLAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILE
Sbjct:  107 SICVKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILE 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A1W5L9E6_9ROSA (DNA-directed RNA polymerase subunit alpha n=24 Tax=Maleae TaxID=721813 RepID=A0A1W5L9E6_9ROSA)

HSP 1 Score: 431 bits (1109), Expect = 5.440e-151
Identity = 210/220 (95.45%), Postives = 217/220 (98.64%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 660
            SIC+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKVTLPLFT+H RLAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMK+KHFRIEDVKHILNILEI
Sbjct:  107 SICLKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKMKHFRIEDVKHILNILEI 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A1V0IZF5_9ROSA (DNA-directed RNA polymerase subunit alpha n=1 Tax=Gillenia stipulata TaxID=141002 RepID=A0A1V0IZF5_9ROSA)

HSP 1 Score: 431 bits (1107), Expect = 8.270e-151
Identity = 209/220 (95.00%), Postives = 217/220 (98.64%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 660
            S+C+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKV+LPLFT+H RLAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI
Sbjct:  107 SLCVKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVSLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A1Q1AMI6_9ROSA (DNA-directed RNA polymerase subunit alpha n=7 Tax=Maleae TaxID=721813 RepID=A0A1Q1AMI6_9ROSA)

HSP 1 Score: 431 bits (1107), Expect = 1.100e-150
Identity = 209/219 (95.43%), Postives = 216/219 (98.63%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILE 657
            SIC+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKVTLPLFT+H RLAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMK+KHFRIEDVKHILNILE
Sbjct:  107 SICVKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKMKHFRIEDVKHILNILE 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A1V0IJ82_9ROSA (DNA-directed RNA polymerase subunit alpha n=12 Tax=Amygdaloideae TaxID=171637 RepID=A0A1V0IJ82_9ROSA)

HSP 1 Score: 430 bits (1106), Expect = 1.560e-150
Identity = 209/219 (95.43%), Postives = 216/219 (98.63%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILE 657
            SIC+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKVTLPLFT+H RLAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMK+KHFRIEDVKHILNILE
Sbjct:  107 SICLKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKMKHFRIEDVKHILNILE 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A1V0IK38_9ROSA (DNA-directed RNA polymerase n=1 Tax=Rhaphiolepis umbellata TaxID=398295 RepID=A0A1V0IK38_9ROSA)

HSP 1 Score: 430 bits (1106), Expect = 1.560e-150
Identity = 209/219 (95.43%), Postives = 216/219 (98.63%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILE 657
            SIC+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKVTLPLFT+H RLAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMK+KHFRIEDVKHILNILE
Sbjct:  107 SICLKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVTLPLFTYHDRLAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKMKHFRIEDVKHILNILE 325
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A1V0J8M6_9ROSA (DNA-directed RNA polymerase subunit alpha n=4 Tax=Rosales TaxID=3744 RepID=A0A1V0J8M6_9ROSA)

HSP 1 Score: 430 bits (1105), Expect = 1.670e-150
Identity = 210/220 (95.45%), Postives = 215/220 (97.73%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 660
            SIC+KGPGYVTA+DIILPP+VEIVDNTQHIANLTEPINLCIELQIERNRGY IKTPNNFQ GSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLIDLFIPFLHAEEENL LENNQHKVTLPLFTFHG LAKQRKNKKEIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI
Sbjct:  107 SICVKGPGYVTARDIILPPAVEIVDNTQHIANLTEPINLCIELQIERNRGYHIKTPNNFQYGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLENNQHKVTLPLFTFHGILAKQRKNKKEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 326
[Close]
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Match: A0A8K1U8F9_9ROSA (RNA polymerase alpha subunit n=22 Tax=Maleae TaxID=721813 RepID=A0A8K1U8F9_9ROSA)

HSP 1 Score: 430 bits (1105), Expect = 1.990e-150
Identity = 209/220 (95.00%), Postives = 216/220 (98.18%), Query Frame = 1 
Query:    1 SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGRLAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDLMKIKHFRIEDVKHILNILEI 660
            SIC+KGPGYVTAQDIILPPSVEIVDNTQ+IANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALH+ASRNLI+LFIPFLHAEEENL LENNQHKVTLPLFT+H RLAKQRKNK EIAL+YIFIDQSEL PRVYNCLKRSNIHTLLDLLNNSQEDLMK+KHFRIEDVKHILNILEI
Sbjct:  107 SICVKGPGYVTAQDIILPPSVEIVDNTQYIANLTEPINLCIELQIERNRGYRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLHAEEENLHLENNQHKVTLPLFTYHDRLAKQRKNKNEIALKYIFIDQSELLPRVYNCLKRSNIHTLLDLLNNSQEDLMKMKHFRIEDVKHILNILEI 326
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72790.17287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E3W0M5_PRUPE5.760e-158100.00DNA-directed RNA polymerase subunit alpha n=72 Tax... [more]
A0A1V0IH23_9ROSA3.450e-15195.45DNA-directed RNA polymerase subunit alpha n=22 Tax... [more]
A0A649ZBV0_9ROSA3.450e-15195.89DNA-directed RNA polymerase subunit alpha n=2 Tax=... [more]
A0A1W5L9E6_9ROSA5.440e-15195.45DNA-directed RNA polymerase subunit alpha n=24 Tax... [more]
A0A1V0IZF5_9ROSA8.270e-15195.00DNA-directed RNA polymerase subunit alpha n=1 Tax=... [more]
A0A1Q1AMI6_9ROSA1.100e-15095.43DNA-directed RNA polymerase subunit alpha n=7 Tax=... [more]
A0A1V0IJ82_9ROSA1.560e-15095.43DNA-directed RNA polymerase subunit alpha n=12 Tax... [more]
A0A1V0IK38_9ROSA1.560e-15095.43DNA-directed RNA polymerase n=1 Tax=Rhaphiolepis u... [more]
A0A1V0J8M6_9ROSA1.670e-15095.45DNA-directed RNA polymerase subunit alpha n=4 Tax=... [more]
A0A8K1U8F9_9ROSA1.990e-15095.00RNA polymerase alpha subunit n=22 Tax=Maleae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72790contigM-pyrifera_M_contig72790:1..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score394.4
Seed ortholog evalue3.4e-107
Seed eggNOG ortholog3880.AES88253
Preferred namerpoA
KEGG rclassRC02795
KEGG koko:K02948,ko:K03040
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03010,ko03020,map00230,map00240,map01100,map03010,map03020
KEGG ModuleM00178,M00179,M00183
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Bacterial RNA polymerase, alpha chain C terminal domain
EggNOG OGs388WC@33090,3GXN5@35493,4JT71@91835,COG0100@1,KOG0408@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEbr01610,br01611,ko00000,ko00001,ko00002,ko01000,ko03011,ko03021,ko03400
Exons1
Model size663
Cds size663
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.899148-CDS-M-pyrifera_M_contig72790:0..6631622816624.899148-CDS-M-pyrifera_M_contig72790:0..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72790 1..663 +
1692278084.2069092-CDS-M-pyrifera_M_contig72790:0..6631692278084.2069092-CDS-M-pyrifera_M_contig72790:0..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72790 1..663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72790.17287.1prot_M-pyrifera_M_contig72790.17287.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72790 1..663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72790.17287.1

>prot_M-pyrifera_M_contig72790.17287.1 ID=prot_M-pyrifera_M_contig72790.17287.1|Name=mRNA_M-pyrifera_M_contig72790.17287.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=221bp
SICIKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELQIERNRG
YRIKTPNNFQDGSYPIDAVFMPVRNANHSIHSYVNGNEKQEILFLEIWTN
GSLTPKEALHDASRNLIDLFIPFLHAEEENLQLENNQHKVTLPLFTFHGR
LAKQRKNKKEIALQYIFIDQSELFPRVYNCLKRSNIHTLLDLLNNSQEDL
MKIKHFRIEDVKHILNILEI*
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mRNA from alignment at M-pyrifera_M_contig72790:1..663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72790.17287.1 ID=mRNA_M-pyrifera_M_contig72790.17287.1|Name=mRNA_M-pyrifera_M_contig72790.17287.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=663bp|location=Sequence derived from alignment at M-pyrifera_M_contig72790:1..663+ (Macrocystis pyrifera P11B4 male)
TCTATTTGTATCAAGGGTCCTGGATATGTAACTGCTCAAGACATTATCTT
ACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAA
CGGAACCAATTAATTTGTGTATTGAATTACAAATCGAGAGGAATCGCGGA
TATCGTATAAAAACGCCAAATAACTTTCAAGACGGAAGTTATCCTATAGA
TGCTGTATTCATGCCTGTTCGAAATGCGAATCATAGCATTCATTCTTATG
TGAATGGGAATGAAAAACAGGAGATACTTTTTCTCGAAATATGGACAAAT
GGAAGTTTAACTCCTAAAGAAGCACTTCATGACGCCTCCCGGAATTTGAT
TGATTTATTTATTCCTTTTTTACATGCAGAAGAGGAAAACTTACAGTTAG
AAAACAATCAACACAAAGTTACTTTGCCCCTTTTTACTTTTCATGGTAGA
TTGGCTAAACAAAGGAAAAATAAAAAAGAAATCGCATTGCAATATATTTT
TATTGACCAATCAGAATTGTTCCCCAGGGTCTATAATTGCCTCAAAAGGT
CCAATATACATACATTATTGGATCTTTTGAATAACAGTCAAGAAGATCTT
ATGAAAATTAAACATTTTCGCATAGAAGATGTAAAACATATATTGAACAT
TCTAGAAATATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72790:1..663+

>mRNA_M-pyrifera_M_contig72790.17287.1 ID=mRNA_M-pyrifera_M_contig72790.17287.1|Name=mRNA_M-pyrifera_M_contig72790.17287.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1326bp|location=Sequence derived from alignment at M-pyrifera_M_contig72790:1..663+ (Macrocystis pyrifera P11B4 male)
TCTATTTGTATCAAGGGTCCTGGATATGTAACTGCTCAAGACATTATCTT
ACCACCTTCTGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAA
CGGAACCAATTAATTTGTGTATTGAATTACAAATCGAGAGGAATCGCGGA
TATCGTATAAAAACGCCAAATAACTTTCAAGACGGAAGTTATCCTATAGA
TGCTGTATTCATGCCTGTTCGAAATGCGAATCATAGCATTCATTCTTATG
TGAATGGGAATGAAAAACAGGAGATACTTTTTCTCGAAATATGGACAAAT
GGAAGTTTAACTCCTAAAGAAGCACTTCATGACGCCTCCCGGAATTTGAT
TGATTTATTTATTCCTTTTTTACATGCAGAAGAGGAAAACTTACAGTTAG
AAAACAATCAACACAAAGTTACTTTGCCCCTTTTTACTTTTCATGGTAGA
TTGGCTAAACAAAGGAAAAATAAAAAAGAAATCGCATTGCAATATATTTT
TATTGACCAATCAGAATTGTTCCCCAGGGTCTATAATTGCCTCAAAAGGT
CCAATATACATACATTATTGGATCTTTTGAATAACAGTCAAGAAGATCTT
ATGAAAATTAAACATTTTCGCATAGAAGATGTAAAACATATATTGAACAT
TCTAGAAATATAATCTATTTGTATCAAGGGTCCTGGATATGTAACTGCTC
AAGACATTATCTTACCACCTTCTGTGGAAATCGTTGATAATACACAGCAT
ATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTACAAATCGA
GAGGAATCGCGGATATCGTATAAAAACGCCAAATAACTTTCAAGACGGAA
GTTATCCTATAGATGCTGTATTCATGCCTGTTCGAAATGCGAATCATAGC
ATTCATTCTTATGTGAATGGGAATGAAAAACAGGAGATACTTTTTCTCGA
AATATGGACAAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGACGCCT
CCCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCAGAAGAGGAA
AACTTACAGTTAGAAAACAATCAACACAAAGTTACTTTGCCCCTTTTTAC
TTTTCATGGTAGATTGGCTAAACAAAGGAAAAATAAAAAAGAAATCGCAT
TGCAATATATTTTTATTGACCAATCAGAATTGTTCCCCAGGGTCTATAAT
TGCCTCAAAAGGTCCAATATACATACATTATTGGATCTTTTGAATAACAG
TCAAGAAGATCTTATGAAAATTAAACATTTTCGCATAGAAGATGTAAAAC
ATATATTGAACATTCTAGAAATATAA
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