mRNA_M-pyrifera_M_contig72760.17282.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72760.17282.1
Unique NamemRNA_M-pyrifera_M_contig72760.17282.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: A0A7S1YDM2_9STRA (Glutathione-disulfide reductase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YDM2_9STRA)

HSP 1 Score: 216 bits (550), Expect = 4.220e-68
Identity = 101/161 (62.73%), Postives = 129/161 (80.12%), Query Frame = 1
Query:    1 YAVGDVIGKADLTPVAIACGRLLADRLFHGKSR-EDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            YA+GDV+GK +LTP+AIA GR LADRLF  ++  +DAK+S++N+PTV F+HPP+ T GLTEA+A E  G+D VK+YKS F N++Y  W   P++KP+T  KLVCVGE++ +VGLH+IG+  DE+LQGFG+AM MGATKADFD  VAIHPTAAEE VT  PW
Sbjct:   67 YALGDVVGKVELTPMAIATGRRLADRLFGPENDWKDAKVSYENVPTVIFSHPPIGTIGLTEAQAVEKFGEDEVKIYKSKFANLYYGPWQVEPDDKPKTAMKLVCVGEEQLIVGLHVIGMGSDEMLQGFGIAMKMGATKADFDSTVAIHPTAAEEFVTMFPW 227          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: A0A7S4S8I6_9STRA (Glutathione-disulfide reductase n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S8I6_9STRA)

HSP 1 Score: 215 bits (547), Expect = 5.330e-66
Identity = 99/160 (61.88%), Postives = 122/160 (76.25%), Query Frame = 1
Query:    1 YAVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            YA+GDV GK +LTP+AIA GR LADRLF G     AK+S+DN+PTV F+HPP+ T GLTE +A E +G   +KVY+S F N++Y  W    E+KP+T  KL+C G++E VVGLH+IG+  DE+LQGFG+AM MGATKADFD CVAIHPTAAEE VT  PW
Sbjct:  195 YAIGDVCGKVELTPMAIAAGRRLADRLFGGAEHAGAKVSYDNVPTVVFSHPPIGTIGLTERQALEKYGPQNIKVYRSKFPNLYYGPWMVEAEDKPKTAMKLICAGKEELVVGLHVIGMGADEMLQGFGIAMKMGATKADFDACVAIHPTAAEEFVTMFPW 354          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: W7U997_9STRA (Glutathione reductase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U997_9STRA)

HSP 1 Score: 217 bits (552), Expect = 2.480e-65
Identity = 102/160 (63.75%), Postives = 127/160 (79.38%), Query Frame = 1
Query:    1 YAVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            YA+GDV G+  LTP+AIA GR LADRLF   S  +AK  +D++PTV F+HPP+ T GLTEA+A+E +G+  V+VY S FVN+FY  W  APEEKP+T  K+VCVGE+E+VVGLH+IG+  DE+LQGF VA+ MGATKADFD CVA+HPTAAEE VT +PW
Sbjct:  360 YALGDVCGRVQLTPMAIAAGRRLADRLFG--SLPEAKADYDDVPTVVFSHPPIGTVGLTEAQAKEEYGEGNVRVYSSKFVNLFYGPWRLAPEEKPKTAMKMVCVGEEERVVGLHVIGMGADEMLQGFAVAVKMGATKADFDACVALHPTAAEELVTLSPW 517          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: D8LHC1_ECTSI (Glutathione reductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHC1_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 5.210e-65
Identity = 99/160 (61.88%), Postives = 123/160 (76.88%), Query Frame = 1
Query:    1 YAVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            YA+GDV G+ +LTP+AIA GR L+DRLF G   +DAK  + N+PTV F+HPPMATCGLTE  AR  +G+DAVKVY+S F N+F+  W   PE+K +T  K++  GE EKVVG+H+IG+  DE++QGFGVAM MG TKAD D CVAIHPTA+EE VT APW
Sbjct:  315 YALGDVTGRVELTPMAIAAGRTLSDRLFAGM--KDAKADYTNVPTVVFSHPPMATCGLTEPDARAAYGEDAVKVYQSKFTNLFFGHWQMPPEDKEKTAMKVIVTGESEKVVGIHIIGMGADEMMQGFGVAMKMGCTKADLDSCVAIHPTASEELVTLAPW 472          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: H3GA09_PHYRM (Glutathione reductase n=16 Tax=Phytophthora TaxID=4783 RepID=H3GA09_PHYRM)

HSP 1 Score: 214 bits (544), Expect = 1.560e-64
Identity = 107/165 (64.85%), Postives = 127/165 (76.97%), Query Frame = 1
Query:    4 AVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAA------PEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            AVGDV G   LTPVAIA GR L+DRLF G   +DAK+S++NIPTV F+HPP+ T GLTE +AR  +GDD  KVY S FVNM+Y + +        P++KP+T  KLVCVG++EKVVGLHMIG+A DEILQGFGVA+ MGATKADFD C+AIHPTA EE VT APW
Sbjct:  317 AVGDVCGTPALTPVAIAAGRRLSDRLFGGM--KDAKVSYENIPTVVFSHPPIGTIGLTEEQARRQYGDDNTKVYASRFVNMYYGLINEVDEATGEPKDKPKTAMKLVCVGKEEKVVGLHMIGMAADEILQGFGVAVKMGATKADFDNCIAIHPTAGEELVTLAPW 479          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: A0A7S2SHB9_9STRA (Glutathione-disulfide reductase n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SHB9_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.870e-64
Identity = 92/160 (57.50%), Postives = 121/160 (75.62%), Query Frame = 1
Query:    1 YAVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            +A+GDV G  +LTP+AIA GR LADRLF G    DAK+S+DN+ TV F+HPPM T GL+E +A E +G+D ++VY S F N++Y  W    ++KP+T  KL+C G++E VVGLH+IG+  DE+LQGFG+A+ MGATKADFD C+A+HPTA EE VT  PW
Sbjct:   44 FALGDVCGNVELTPMAIAAGRRLADRLFGGPQFADAKVSYDNVATVVFSHPPMGTIGLSEKQAVEKYGEDNLQVYNSKFANLYYGPWQVEADDKPKTAMKLICAGKEELVVGLHVIGMGADEMLQGFGIAIKMGATKADFDSCIALHPTAGEEFVTMFPW 203          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: A0A225VLG3_9STRA (Glutathione reductase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VLG3_9STRA)

HSP 1 Score: 212 bits (540), Expect = 3.950e-64
Identity = 106/165 (64.24%), Postives = 125/165 (75.76%), Query Frame = 1
Query:    4 AVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEE------KPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            AVGDV G   LTPVAIA GR L+DRLF G   ++AK+S++NIPTV F+HPP+ T GLTE +AR  +GDD +KVY S+FVNM+Y +     EE      KP+T  KLVC G+DEKVVGLHMIG+A DEILQGFGVA+ MGATKADFD C+AIHPTA EE VT  PW
Sbjct:  298 AVGDVCGTPALTPVAIAAGRRLSDRLFGGM--KNAKVSYENIPTVVFSHPPIGTIGLTEQQARRKYGDDNIKVYTSSFVNMYYGLTSEVDEETGEAKEKPKTAMKLVCAGKDEKVVGLHMIGMAADEILQGFGVALKMGATKADFDNCIAIHPTAGEELVTLVPW 460          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: A0A3R7KHI6_9STRA (Glutathione reductase n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KHI6_9STRA)

HSP 1 Score: 213 bits (542), Expect = 4.370e-64
Identity = 106/165 (64.24%), Postives = 127/165 (76.97%), Query Frame = 1
Query:    4 AVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWD------AAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            AVGDV G   LTPVAIA GR L+DRLF G     AK+S++NIPTV F+HPP+ T GLTE +AR+ +GDD++KVY S FVNM+Y + +        P++KP+T  KLVC G+DEKVVGLHMIG+A DEILQGFGVA+ MGATKADFD C+AIHPTA EE VT APW
Sbjct:  332 AVGDVCGTPALTPVAIAAGRRLSDRLFGGMG--GAKVSYENIPTVVFSHPPIGTIGLTEEQARQKYGDDSIKVYTSRFVNMYYGLINEMDETTGEPKDKPKTAMKLVCAGKDEKVVGLHMIGMAADEILQGFGVAVKMGATKADFDNCMAIHPTAGEELVTLAPW 494          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: A0A835ZGV5_9STRA (Glutathione reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGV5_9STRA)

HSP 1 Score: 213 bits (542), Expect = 4.460e-64
Identity = 104/160 (65.00%), Postives = 124/160 (77.50%), Query Frame = 1
Query:    1 YAVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPW 480
            YAVGDV GK +LTP+AIA GR LADRLF+G +   AK SFD +P+V FTHPP+ T GLTE +A + +G D VKVY S FVN+F+  +D AP +KP+T  KLVC G DEKVVGLH++G+  DE+LQGF VA+ MGATKADFD CVAIHPTAAEE VT  PW
Sbjct:  325 YAVGDVTGKLELTPMAIAAGRRLADRLFNG-ALPQAKASFDTVPSVYFTHPPVGTVGLTEPQAVKRYGQDNVKVYTSRFVNLFFGPFDTAPADKPKTAVKLVCQGPDEKVVGLHVVGMGADEMLQGFAVAIKMGATKADFDACVAIHPTAAEEVVTLPPW 483          
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Match: A0A7S0NU49_9EUKA (Glutathione reductase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NU49_9EUKA)

HSP 1 Score: 213 bits (543), Expect = 4.520e-64
Identity = 108/165 (65.45%), Postives = 130/165 (78.79%), Query Frame = 1
Query:    1 YAVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTHPPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYA---MWDAAPEEKPRTFFKLVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTAAEEAVTFAPWRS 486
            YAVGDVIGK DLTPVAIA GRLLADRLF G + +D  M +D IPTV F+HPP+A  GLTE +A    G D V V+KSTFVNM Y+   ++D   + +P+TF K+VCVGE++++VGLHMIGLAVDEILQGFGVA+ MGATKADFD  VAIHPT+AEE VT  PW++
Sbjct:  349 YAVGDVIGKVDLTPVAIAAGRLLADRLFAGAAEKDTLMDYDYIPTVVFSHPPLAVVGLTEQQAIGKFGVDEVTVHKSTFVNMLYSREFLYDG--QFQPKTFAKIVCVGEEQRIVGLHMIGLAVDEILQGFGVAIKMGATKADFDSVVAIHPTSAEELVTIPPWQA 511          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72760.17282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1YDM2_9STRA4.220e-6862.73Glutathione-disulfide reductase n=1 Tax=Grammatoph... [more]
A0A7S4S8I6_9STRA5.330e-6661.88Glutathione-disulfide reductase n=2 Tax=Ditylum br... [more]
W7U997_9STRA2.480e-6563.75Glutathione reductase n=2 Tax=Monodopsidaceae TaxI... [more]
D8LHC1_ECTSI5.210e-6561.88Glutathione reductase n=2 Tax=Ectocarpus TaxID=287... [more]
H3GA09_PHYRM1.560e-6464.85Glutathione reductase n=16 Tax=Phytophthora TaxID=... [more]
A0A7S2SHB9_9STRA1.870e-6457.50Glutathione-disulfide reductase n=1 Tax=Eucampia a... [more]
A0A225VLG3_9STRA3.950e-6464.24Glutathione reductase n=1 Tax=Phytophthora megakar... [more]
A0A3R7KHI6_9STRA4.370e-6464.24Glutathione reductase n=3 Tax=Phytophthora kernovi... [more]
A0A835ZGV5_9STRA4.460e-6465.00Glutathione reductase n=1 Tax=Tribonema minus TaxI... [more]
A0A7S0NU49_9EUKA4.520e-6465.45Glutathione reductase n=1 Tax=Calcidiscus leptopor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72760contigM-pyrifera_M_contig72760:1..489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue4.2e-54
Seed eggNOG ortholog4787.PITG_13427T0
KEGG rclassRC00011
KEGG koko:K00383
KEGG ReactionR00094,R00115
KEGG Pathwayko00480,ko04918,map00480,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pyridine nucleotide-disulphide oxidoreductase
EggNOG OGs3Q9CY@4776,COG1249@1,KOG0405@2759
EC1.8.1.7
COG Functional cat.Q
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size489
Cds size489
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.5787575-CDS-M-pyrifera_M_contig72760:0..4891622816624.5787575-CDS-M-pyrifera_M_contig72760:0..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72760 1..489 +
1692278083.9919136-CDS-M-pyrifera_M_contig72760:0..4891692278083.9919136-CDS-M-pyrifera_M_contig72760:0..489Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72760 1..489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72760.17282.1prot_M-pyrifera_M_contig72760.17282.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72760 1..489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72760.17282.1

>prot_M-pyrifera_M_contig72760.17282.1 ID=prot_M-pyrifera_M_contig72760.17282.1|Name=mRNA_M-pyrifera_M_contig72760.17282.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=163bp
YAVGDVIGKADLTPVAIACGRLLADRLFHGKSREDAKMSFDNIPTVTFTH
PPMATCGLTEAKAREVHGDDAVKVYKSTFVNMFYAMWDAAPEEKPRTFFK
LVCVGEDEKVVGLHMIGLAVDEILQGFGVAMNMGATKADFDRCVAIHPTA
AEEAVTFAPWRS*
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mRNA from alignment at M-pyrifera_M_contig72760:1..489+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72760.17282.1 ID=mRNA_M-pyrifera_M_contig72760.17282.1|Name=mRNA_M-pyrifera_M_contig72760.17282.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=489bp|location=Sequence derived from alignment at M-pyrifera_M_contig72760:1..489+ (Macrocystis pyrifera P11B4 male)
TACGCCGTCGGAGATGTGATTGGCAAGGCAGACCTCACCCCAGTGGCCAT CGCCTGCGGCAGACTGCTTGCAGACCGGCTCTTTCACGGCAAGTCTCGAG AAGACGCAAAGATGAGCTTCGACAACATCCCAACCGTCACCTTCACGCAC CCTCCCATGGCCACGTGCGGACTCACCGAGGCCAAGGCCAGGGAGGTGCA TGGAGATGACGCCGTCAAGGTGTACAAGTCCACCTTTGTCAACATGTTCT ACGCCATGTGGGACGCGGCCCCGGAGGAGAAGCCACGCACCTTTTTCAAA CTTGTCTGCGTCGGGGAAGACGAAAAAGTGGTGGGCCTCCACATGATCGG ACTCGCTGTCGACGAAATTCTCCAAGGGTTTGGAGTGGCCATGAACATGG GCGCCACAAAAGCAGACTTTGACCGTTGCGTTGCAATCCACCCTACTGCA GCAGAAGAAGCAGTCACCTTTGCACCATGGCGGTCGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72760:1..489+

>mRNA_M-pyrifera_M_contig72760.17282.1 ID=mRNA_M-pyrifera_M_contig72760.17282.1|Name=mRNA_M-pyrifera_M_contig72760.17282.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=978bp|location=Sequence derived from alignment at M-pyrifera_M_contig72760:1..489+ (Macrocystis pyrifera P11B4 male)
TACGCCGTCGGAGATGTGATTGGCAAGGCAGACCTCACCCCAGTGGCCAT
CGCCTGCGGCAGACTGCTTGCAGACCGGCTCTTTCACGGCAAGTCTCGAG
AAGACGCAAAGATGAGCTTCGACAACATCCCAACCGTCACCTTCACGCAC
CCTCCCATGGCCACGTGCGGACTCACCGAGGCCAAGGCCAGGGAGGTGCA
TGGAGATGACGCCGTCAAGGTGTACAAGTCCACCTTTGTCAACATGTTCT
ACGCCATGTGGGACGCGGCCCCGGAGGAGAAGCCACGCACCTTTTTCAAA
CTTGTCTGCGTCGGGGAAGACGAAAAAGTGGTGGGCCTCCACATGATCGG
ACTCGCTGTCGACGAAATTCTCCAAGGGTTTGGAGTGGCCATGAACATGG
GCGCCACAAAAGCAGACTTTGACCGTTGCGTTGCAATCCACCCTACTGCA
GCAGAAGAAGCAGTCACCTTTGCACCATGGCGGTCGTAATACGCCGTCGG
AGATGTGATTGGCAAGGCAGACCTCACCCCAGTGGCCATCGCCTGCGGCA
GACTGCTTGCAGACCGGCTCTTTCACGGCAAGTCTCGAGAAGACGCAAAG
ATGAGCTTCGACAACATCCCAACCGTCACCTTCACGCACCCTCCCATGGC
CACGTGCGGACTCACCGAGGCCAAGGCCAGGGAGGTGCATGGAGATGACG
CCGTCAAGGTGTACAAGTCCACCTTTGTCAACATGTTCTACGCCATGTGG
GACGCGGCCCCGGAGGAGAAGCCACGCACCTTTTTCAAACTTGTCTGCGT
CGGGGAAGACGAAAAAGTGGTGGGCCTCCACATGATCGGACTCGCTGTCG
ACGAAATTCTCCAAGGGTTTGGAGTGGCCATGAACATGGGCGCCACAAAA
GCAGACTTTGACCGTTGCGTTGCAATCCACCCTACTGCAGCAGAAGAAGC
AGTCACCTTTGCACCATGGCGGTCGTAA
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