mRNA_M-pyrifera_M_contig72758.17280.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72758.17280.1
Unique NamemRNA_M-pyrifera_M_contig72758.17280.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A5A8DNN3_CAFRO (Homeobox domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DNN3_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 8.560e-15
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 KGSGRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            K SGRL  +  +ALK W+   DHW+ PYP E EK+ +A E GMTL QVS+WFRNERKR
Sbjct:  223 KTSGRLPADTTKALKQWMV--DHWSSPYPQEAEKATMAGESGMTLQQVSNWFRNERKR 278
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BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A5A8DVS1_CAFRO (Homeobox domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DVS1_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.670e-14
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 KGSGRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            K SGRL  +  +ALK W+   DHW+ PYP E EK+ +A E GMTL QVS+WFRNERKR
Sbjct:  395 KTSGRLPADTTKALKQWMV--DHWSSPYPQEAEKATMAGESGMTLQQVSNWFRNERKR 450
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BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A7S0K022_CAFRO (Hypothetical protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K022_CAFRO)

HSP 1 Score: 75.5 bits (184), Expect = 1.720e-14
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:    7 KGSGRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            K SGRL  +  +ALK W+   DHW+ PYP E EK+ +A E GMTL QVS+WFRNERKR
Sbjct:  585 KTSGRLPADTTKALKQWMV--DHWSSPYPQEAEKATMAGESGMTLQQVSNWFRNERKR 640
[Close]
BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A7S0JX65_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0JX65_CAFRO)

HSP 1 Score: 65.9 bits (159), Expect = 4.310e-12
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:    7 KGSGRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            +G+ RL P     LK W++   HW+ PYP++ +K+ LA E  MT+ QV +WFRNERKR
Sbjct:   22 RGATRLPPSATLTLKRWMSDPAHWSFPYPTDADKAELAGELDMTVVQVGNWFRNERKR 79
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BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A1V9ZR07_9STRA (Homeobox domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZR07_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.860e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   16 GRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            G L PE    LK W+   +H+A PYPSEEEK  LAAE G+ + Q+S+WF N RKR
Sbjct:   69 GTLNPEAKNVLKAWMFSPEHFAHPYPSEEEKEELAAEAGIEVKQLSNWFTNARKR 123
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BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A3R6XHF8_9STRA (Homeobox domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XHF8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.950e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   16 GRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            G L PE    LK W+   +H+A PYPSEEEK  LAAE G+ + Q+S+WF N RKR
Sbjct:   71 GTLNPEAKNVLKAWMFSPEHFAHPYPSEEEKEELAAEAGIEVKQLSNWFTNARKR 125
[Close]
BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A1V9YLB9_9STRA (Homeobox domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLB9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.780e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   16 GRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            G L PE    LK W+   +H+A PYPSEEEK  LAAE G+ + Q+S+WF N RKR
Sbjct:  102 GTLNPEAKNVLKAWMFSPEHFAHPYPSEEEKEELAAEAGIEVKQLSNWFTNARKR 156
[Close]
BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A6G0W7J9_9STRA (Homeobox domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W7J9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 3.960e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   16 GRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            G L PE    LK W+   +H+A PYPSEEEK  LAAE G+ + Q+S+WF N RKR
Sbjct:  101 GTLNPEAKNVLKAWMFSPEHFAHPYPSEEEKEELAAEAGIEVKQLSNWFTNARKR 155
[Close]
BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: T0R265_SAPDV (Homeobox domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0R265_SAPDV)

HSP 1 Score: 65.5 bits (158), Expect = 4.220e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   16 GRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            G L PE    LK W+   +H+A PYPSEEEK  LAAE G+ + Q+S+WF N RKR
Sbjct:  123 GTLNPEAKNVLKAWMFSPEHFAHPYPSEEEKEELAAEAGIEVKQLSNWFTNARKR 177
[Close]
BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Match: A0A485L161_9STRA (Aste57867_13777 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L161_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 4.570e-11
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:   16 GRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQVSDWFRNERKR 180
            G L PE    LK W+   +H+A PYPSEEEK  LAAE G+ + Q+S+WF N RKR
Sbjct:  134 GTLNPEAKNVLKAWMFSPEHFAHPYPSEEEKEELAAEAGIEVKQLSNWFTNARKR 188
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72758.17280.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8DNN3_CAFRO8.560e-1560.34Homeobox domain-containing protein n=1 Tax=Cafeter... [more]
A0A5A8DVS1_CAFRO1.670e-1460.34Homeobox domain-containing protein n=2 Tax=Cafeter... [more]
A0A7S0K022_CAFRO1.720e-1460.34Hypothetical protein n=1 Tax=Cafeteria roenbergens... [more]
A0A7S0JX65_CAFRO4.310e-1248.28Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A1V9ZR07_9STRA2.860e-1154.55Homeobox domain-containing protein n=1 Tax=Thraust... [more]
A0A3R6XHF8_9STRA2.950e-1154.55Homeobox domain-containing protein n=2 Tax=Aphanom... [more]
A0A1V9YLB9_9STRA3.780e-1154.55Homeobox domain-containing protein n=1 Tax=Achlya ... [more]
A0A6G0W7J9_9STRA3.960e-1154.55Homeobox domain-containing protein n=1 Tax=Aphanom... [more]
T0R265_SAPDV4.220e-1154.55Homeobox domain-containing protein n=2 Tax=Saprole... [more]
A0A485L161_9STRA4.570e-1154.55Aste57867_13777 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72758contigM-pyrifera_M_contig72758:538..717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog112098.XP_008605875.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA binding
EggNOG OGsKOG0773@1,KOG0773@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size180
Cds size180
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.5196307-CDS-M-pyrifera_M_contig72758:537..7171622816624.5196307-CDS-M-pyrifera_M_contig72758:537..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72758 538..717 +
1692278083.9639065-CDS-M-pyrifera_M_contig72758:537..7171692278083.9639065-CDS-M-pyrifera_M_contig72758:537..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72758 538..717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72758.17280.1prot_M-pyrifera_M_contig72758.17280.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72758 538..717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72758.17280.1

>prot_M-pyrifera_M_contig72758.17280.1 ID=prot_M-pyrifera_M_contig72758.17280.1|Name=mRNA_M-pyrifera_M_contig72758.17280.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=60bp
MLKGSGRLLPEQVRALKLWVAHEDHWAKPYPSEEEKSRLAAEHGMTLTQV
SDWFRNERKR
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mRNA from alignment at M-pyrifera_M_contig72758:538..717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72758.17280.1 ID=mRNA_M-pyrifera_M_contig72758.17280.1|Name=mRNA_M-pyrifera_M_contig72758.17280.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig72758:538..717+ (Macrocystis pyrifera P11B4 male)
ATGTTGAAAGGGAGTGGAAGGTTGCTGCCCGAACAAGTGCGTGCTCTCAA
GCTTTGGGTGGCGCATGAAGATCATTGGGCGAAACCATACCCTTCTGAGG
AGGAGAAGAGCAGACTTGCAGCCGAGCACGGCATGACACTGACACAAGTG
TCTGATTGGTTCCGTAATGAGCGCAAACGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72758:538..717+

>mRNA_M-pyrifera_M_contig72758.17280.1 ID=mRNA_M-pyrifera_M_contig72758.17280.1|Name=mRNA_M-pyrifera_M_contig72758.17280.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig72758:538..717+ (Macrocystis pyrifera P11B4 male)
ATGTTGAAAGGGAGTGGAAGGTTGCTGCCCGAACAAGTGCGTGCTCTCAA
GCTTTGGGTGGCGCATGAAGATCATTGGGCGAAACCATACCCTTCTGAGG
AGGAGAAGAGCAGACTTGCAGCCGAGCACGGCATGACACTGACACAAGTG
TCTGATTGGTTCCGTAATGAGCGCAAACGTATGTTGAAAGGGAGTGGAAG
GTTGCTGCCCGAACAAGTGCGTGCTCTCAAGCTTTGGGTGGCGCATGAAG
ATCATTGGGCGAAACCATACCCTTCTGAGGAGGAGAAGAGCAGACTTGCA
GCCGAGCACGGCATGACACTGACACAAGTGTCTGATTGGTTCCGTAATGA
GCGCAAACGT
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