mRNA_M-pyrifera_M_contig72742.17276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72742.17276.1
Unique NamemRNA_M-pyrifera_M_contig72742.17276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: A0A6H5KZT2_9PHAE (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZT2_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.450e-12
Identity = 36/52 (69.23%), Postives = 43/52 (82.69%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            +  E+A+LE   + IPETLI+EQAREKFAIMMTEFKDQG+ D +IQ MITKE
Sbjct:  373 KAYEEALLETCSITIPETLIVEQAREKFAIMMTEFKDQGESDAKIQSMITKE 424          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: A0A7S2G352_9STRA (Peptidylprolyl isomerase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G352_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.600e-11
Identity = 34/52 (65.38%), Postives = 46/52 (88.46%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            +VLE+ ++++  VEIPETLI+EQAREK+A MM+EF+ QG PDE+I+KMITKE
Sbjct:  356 KVLEEELVKIADVEIPETLIMEQAREKYANMMSEFRAQGTPDEEIKKMITKE 407          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: A0A7S2SVM8_9STRA (Peptidylprolyl isomerase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVM8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.270e-9
Identity = 30/50 (60.00%), Postives = 43/50 (86.00%), Query Frame = 1
Query:    7 LEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            +E+A++ +T+ EIPET+I EQ +EKFA+MM+E +D G PDE+I+KMITKE
Sbjct:  361 IEEALVSITKCEIPETMINEQTKEKFAVMMSEQRDSGVPDEEIKKMITKE 410          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: A0A6U5Z873_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U5Z873_GUITH)

HSP 1 Score: 56.6 bits (135), Expect = 1.390e-8
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            + LE+A++++  VEIPETL+ EQ + KFA MM++FK +G  DEQI+ MITKE
Sbjct:   15 KALENAIVDLVDVEIPETLVDEQTKTKFASMMSDFKAKGMDDEQIKSMITKE 66          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: L1IZM4_GUITC (Peptidylprolyl isomerase (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IZM4_GUITC)

HSP 1 Score: 56.6 bits (135), Expect = 5.330e-8
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            + LE+A++++  VEIPETL+ EQ + KFA MM++FK +G  DEQI+ MITKE
Sbjct:  292 KALENAIVDLVDVEIPETLVDEQTKTKFASMMSDFKAKGMDDEQIKSMITKE 343          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: A0A7S4KHC7_GUITH (Peptidylprolyl isomerase n=8 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KHC7_GUITH)

HSP 1 Score: 56.6 bits (135), Expect = 5.430e-8
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            + LE+A++++  VEIPETL+ EQ + KFA MM++FK +G  DEQI+ MITKE
Sbjct:  460 KALENAIVDLVDVEIPETLVDEQTKTKFASMMSDFKAKGMDDEQIKSMITKE 511          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: M1UR28_CYAM1 (Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1UR28_CYAM1)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-7
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            R +ED +L +T+V++PE+LI EQ + +FA +MTE K+QG PD +I+ MITKE
Sbjct:  384 RAIEDFILSITEVDLPESLIEEQIKRQFAELMTELKNQGVPDHKIKAMITKE 435          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: H6WB92_VAULI (Peptidylprolyl isomerase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB92_VAULI)

HSP 1 Score: 55.1 bits (131), Expect = 1.890e-7
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDE-QIQKMITKE 156
            + LE A+LE  + EIPETL+IE+AR+KFAIMM + K QGQ D+ +++KMIT E
Sbjct:  315 KALEAALLERIEAEIPETLVIERARQKFAIMMADMKSQGQQDDAELRKMITPE 367          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: A0A6T5LN79_HETAK (Peptidylprolyl isomerase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5LN79_HETAK)

HSP 1 Score: 55.1 bits (131), Expect = 1.900e-7
Identity = 28/53 (52.83%), Postives = 44/53 (83.02%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQG-QPDEQIQKMITKE 156
            R LE+A++E  ++EIPETL++EQAREK+A+MM + K +G + DE++++MIT E
Sbjct:  356 RALEEALIEQVKIEIPETLVVEQAREKYAMMMADMKTEGSKSDEELKEMITPE 408          
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Match: A0A7S1DES9_HEMAN (Peptidylprolyl isomerase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DES9_HEMAN)

HSP 1 Score: 54.7 bits (130), Expect = 2.600e-7
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMITKE 156
            R LE+ ++E+  VEIPETL+ EQ + KFA MM++FK++G  DE ++ MITKE
Sbjct:  404 RSLENELVEMVDVEIPETLVDEQTKSKFAQMMSDFKEKGMDDEMVKSMITKE 455          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72742.17276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5KZT2_9PHAE2.450e-1269.23Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2G352_9STRA1.600e-1165.38Peptidylprolyl isomerase n=2 Tax=Dictyocha speculu... [more]
A0A7S2SVM8_9STRA1.270e-960.00Peptidylprolyl isomerase n=2 Tax=Rhizochromulina m... [more]
A0A6U5Z873_GUITH1.390e-855.77Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
L1IZM4_GUITC5.330e-855.77Peptidylprolyl isomerase (Fragment) n=1 Tax=Guilla... [more]
A0A7S4KHC7_GUITH5.430e-855.77Peptidylprolyl isomerase n=8 Tax=Guillardia theta ... [more]
M1UR28_CYAM11.010e-753.85Peptidylprolyl isomerase n=1 Tax=Cyanidioschyzon m... [more]
H6WB92_VAULI1.890e-758.49Peptidylprolyl isomerase n=1 Tax=Vaucheria litorea... [more]
A0A6T5LN79_HETAK1.900e-752.83Peptidylprolyl isomerase n=1 Tax=Heterosigma akash... [more]
A0A7S1DES9_HEMAN2.600e-753.85Peptidylprolyl isomerase n=1 Tax=Hemiselmis anders... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72742contigM-pyrifera_M_contig72742:245..400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue3.5e-10
Seed eggNOG ortholog2880.D7FZQ0
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGs2QUET@2759,COG0544@1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816624.3804288-CDS-M-pyrifera_M_contig72742:244..4001622816624.3804288-CDS-M-pyrifera_M_contig72742:244..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72742 245..400 -
1692278083.8823578-CDS-M-pyrifera_M_contig72742:244..4001692278083.8823578-CDS-M-pyrifera_M_contig72742:244..400Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72742 245..400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72742.17276.1prot_M-pyrifera_M_contig72742.17276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72742 245..400 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72742.17276.1

>prot_M-pyrifera_M_contig72742.17276.1 ID=prot_M-pyrifera_M_contig72742.17276.1|Name=mRNA_M-pyrifera_M_contig72742.17276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=52bp
RVLEDAVLEVTQVEIPETLIIEQAREKFAIMMTEFKDQGQPDEQIQKMIT
KE
back to top

mRNA from alignment at M-pyrifera_M_contig72742:245..400-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72742.17276.1 ID=mRNA_M-pyrifera_M_contig72742.17276.1|Name=mRNA_M-pyrifera_M_contig72742.17276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=156bp|location=Sequence derived from alignment at M-pyrifera_M_contig72742:245..400- (Macrocystis pyrifera P11B4 male)
AGGGTCCTGGAAGACGCGGTCCTGGAGGTGACGCAGGTCGAGATCCCGGA GACGCTGATCATCGAGCAGGCGCGCGAGAAGTTCGCCATCATGATGACCG AGTTCAAGGACCAAGGCCAGCCGGACGAGCAGATCCAGAAGATGATCACC AAGGAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72742:245..400-

>mRNA_M-pyrifera_M_contig72742.17276.1 ID=mRNA_M-pyrifera_M_contig72742.17276.1|Name=mRNA_M-pyrifera_M_contig72742.17276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig72742:245..400- (Macrocystis pyrifera P11B4 male)
AGGGTCCTGGAAGACGCGGTCCTGGAGGTGACGCAGGTCGAGATCCCGGA
GACGCTGATCATCGAGCAGGCGCGCGAGAAGTTCGCCATCATGATGACCG
AGTTCAAGGACCAAGGCCAGCCGGACGAGCAGATCCAGAAGATGATCACC
AAGGAGAGGGTCCTGGAAGACGCGGTCCTGGAGGTGACGCAGGTCGAGAT
CCCGGAGACGCTGATCATCGAGCAGGCGCGCGAGAAGTTCGCCATCATGA
TGACCGAGTTCAAGGACCAAGGCCAGCCGGACGAGCAGATCCAGAAGATG
ATCACCAAGGAG
back to top