mRNA_M-pyrifera_M_contig7269.17265.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI) HSP 1 Score: 230 bits (587), Expect = 2.330e-70 Identity = 120/191 (62.83%), Postives = 142/191 (74.35%), Query Frame = 1 Query: 4 QPTRVVLDRTLRLPEGE----DCSILRDGYASMVFYSAGCEETEARAVELAAGVKASQ-----GPGSSSPRKAAASGDSVDFIGLPPRDPGEGVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPRPVPSGMTNRTLQLAGLELIGCTQWGDDEVEYWTRPGLNWPGGRIDRWP 549 QPTRVVLDRTLRL + +ILRDG++S+VFYSAGCE+TEARA EL A VK S+ PG + P + VDF+G+P + PG GV L+GVL L +RGIDHVLVEGGPSVARGFLSE LVDRA+I+RAP+EF RPVPS + TL+ AGLEL+GCT+WGDDE E WTRPGL WPGG + WP Sbjct: 218 QPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFYSAGCEDTEARAAELKADVKRSRTAVSDSPGETEPDTSHQKLAPVDFVGMPVQRPGAGVDLSGVLGALLERGIDHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRPVPSDIATDTLRRAGLELVGCTKWGDDEAECWTRPGLGWPGGGVGSWP 408
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.230e-46 Identity = 87/183 (47.54%), Postives = 113/183 (61.75%), Query Frame = 1 Query: 4 QPTRVVLDRTLRLPEGEDCSILRDGYASMV-FYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPRDPGEGVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPRPVPSGMTNRTLQLAGLELIGCTQWGDDEVEYWTRPGLNWPGGRIDRWP 549 QP RVVLDR LR+PE + C +L DG+ + V F + +ARA EL V G V +P P +G PL V+ L +RGI H++VEGGP +AR FLS+ LVDRA+IV+APV+F +PVPSG+ + L+ AGLEL+G TQWG DEVE W++PGL WP G + WP Sbjct: 82 QPLRVVLDRNLRIPEADQCQLLSDGHPTAVLFTNTPGTFVKARAAELMLSVL----------------GLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 248
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: A0A7S2LDW0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDW0_9STRA) HSP 1 Score: 124 bits (310), Expect = 2.530e-30 Identity = 75/188 (39.89%), Postives = 105/188 (55.85%), Query Frame = 1 Query: 4 QPTRVVLDRTLRLPEGEDCSILRDGYASMVFYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPRDP--GEGVPL---NGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPRPVPSGMTNRTLQLAGLELIGCTQWGDDEVEYWTRPGLNWPG-GRIDRWP 549 QP RV+LD +L L GE +I DG ++V+YS + + V L + S D V F+ L D + +P + +++ L+ RG+ H++VEGGP+ AR FL G+VDRA++VRAPVEF PVP+ M T++ AGL +IG T+ G D VEYWTR GL WP + WP Sbjct: 134 QPVRVILDPSLSLVGGE-YAIFNDGLRTIVYYSQSAAQN--KDVPLPS------------------SDDCVIFVPLAQSDDEKNDKIPSLSPSEIVQDLATRGLTHIMVEGGPATARAFLHSGVVDRAILVRAPVEFQEPVPAQMDEDTMKTAGLNMIGTTEMGGDVVEYWTREGLEWPNPDDLSSWP 300
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: K0RZ71_THAOC (RibD_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZ71_THAOC) HSP 1 Score: 120 bits (301), Expect = 1.370e-28 Identity = 74/191 (38.74%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 1 AQPTRVVLDRTLRLPEGEDCSILRDGYASMVFYSAGCEET--------EARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPRDPGEGVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPRPVPSGMTNRTLQLAGLELIGCTQWGDDEVEYWTRPGLNWPGGRIDRWP 549 +QP RVVLD TL + G ++L+DG ++++++S+ E + VE+ G ASG + L PR+ VL L RG+ H++VEGGP+ AR FL G+VDRA++VRAPV+F PVP+ M TL AGLE+IG G D +EYW R G WP G WP Sbjct: 192 SQPIRVVLDPTLSILGGRKFTLLKDGLSTIIYHSSEHNEDGRHLATSPDVDLVEMTTG----------------ASGSNC----LSPRE---------VLRDLESRGLRHIMVEGGPATARAFLEAGVVDRAILVRAPVQFQIPVPAEMNEETLGRAGLEMIGSGDMGGDTIEYWVRKGSTWPAGE---WP 350
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: B8BTJ7_THAPS (RibD_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BTJ7_THAPS) HSP 1 Score: 113 bits (283), Expect = 6.200e-26 Identity = 70/190 (36.84%), Postives = 101/190 (53.16%), Query Frame = 1 Query: 4 QPTRVVLDRTLRLPEGEDCSILRDGYASMVFYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPR------DPGEGVPLN--GVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPRPVPSGMTNRTLQLAGLELIGCTQWGDDEVEYWTRPGLNWPGGRIDRWP 549 QP RVVLD +L L G + +I DGY ++V++ E E E D V F+ +P + + E L+ G+++ L+KRG++H++VEGG + AR FL+E VDRA++VRA VEF P P+ + TL+ A L++IG T G D VEYW+R L WP + WP Sbjct: 193 QPVRVVLDPSLSLL-GRNYTIFSDGYPTVVYHLQSGREEEISREER----------------------DFVTFVEMPNQISMSTDNDKEQFTLSPQGIIDDLAKRGLNHIMVEGGAATARAFLNERAVDRAILVRASVEFQEPKPAQIDEDTLKAAELQMIGTTNMGSDIVEYWSRNELPWPDSTLPMWP 359
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: A0A6U6BWZ9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BWZ9_GUITH) HSP 1 Score: 107 bits (268), Expect = 4.090e-24 Identity = 62/184 (33.70%), Postives = 102/184 (55.43%), Query Frame = 1 Query: 4 QPTRVVLDRTLRLPEGEDCSILRDGYASMVFYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPRDPGEGVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPR-PVPSGMTNRTLQLAGLELIGCTQ-WGDDEVEYWTRPGLNWPGGRIDRWP 549 QP R V+D +L++ C ++RDGY +++F+S +E + R ++L + ++A+ + V FI P + L +L LS G+ +++EGGP+ + FL + LVDRA+++ AP++F + PVPS + + L+ AGL L+G Q WG D V W++ L WP I WP Sbjct: 148 QPLRAVIDPSLKIEA--HCKVMRDGYKTVIFHS-DSDEVDKRRIQLISELEAT---------------NQVSFIPTPTNQH-RSLDLTSILGELSNLGVKELMLEGGPATVKRFLQQKLVDRAIVIVAPIKFDQLPVPSLIDHHVLKAAGLALLGEHQDWGKDSVSLWSKAQLQWPSPVISEWP 312
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: A0A6V8EGV0_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=4 Tax=Archaea TaxID=2157 RepID=A0A6V8EGV0_9ARCH) HSP 1 Score: 106 bits (264), Expect = 3.370e-23 Identity = 67/182 (36.81%), Postives = 94/182 (51.65%), Query Frame = 1 Query: 4 QPTRVVLDRTLRLPEGEDCSILRDGYASMVFYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPRDPGEGVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPRPVPSGMTNRTLQLAGLELIGCTQWGDDEVEYWTRPGLNWPGGRIDRWP 549 QP RVVLDRTLR+P + ++L DG ++V ++ + R V L +G GV L+ +LE L GI +LVEGGP V F+ EGLVDRA+I+++P E SG+++ L GL L+ TQWG+D V++W+RP L+WP D WP Sbjct: 223 QPLRVVLDRTLRIPT--EATVLNDGGETIVVHT----QQSDRGVILPSGTG--------------------------------GVDLSALLEHLGDIGIQELLVEGGPVVWAQFIEEGLVDRAIIIQSPNELGEGPRSGISDSKLSEVGLSLVEQTQWGEDSVQFWSRPELSWPA---DLWP 363
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: A0A7S1HBG6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HBG6_HEMAN) HSP 1 Score: 98.2 bits (243), Expect = 2.670e-22 Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 1 Query: 253 GVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAP-VEFPR-PVPSGMTNRTLQLAGLE-LIGCTQWGDDEVEYWTRPGLNWPGGRID---RWP 549 G+ L L+ +S+RG+ ++VEGGP+ ARGFL GLVDRA+I++AP VEF + PVPS ++ RTL AGLE L T W DE W R G+ WP G+ + WP Sbjct: 23 GLDLRAALDAMSERGVRELMVEGGPATARGFLDAGLVDRAIIIKAPTVEFDQQPVPSHISERTLTDAGLEELARHTLWDGDETTLWARQGVQWPSGQGEDYASWP 127
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: L1IV36_GUITC (RibD_C domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IV36_GUITC) HSP 1 Score: 100 bits (249), Expect = 6.270e-22 Identity = 56/166 (33.73%), Postives = 92/166 (55.42%), Query Frame = 1 Query: 58 CSILRDGYASMVFYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPRDPGEGVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPR-PVPSGMTNRTLQLAGLELIGCTQ-WGDDEVEYWTRPGLNWPGGRIDRWP 549 C ++RDGY +++F+S +E + R ++L + ++A+ + V FI P + L +L LS G+ +++EGGP+ + FL + LVDRA+++ AP++F + PVPS + + L+ AGL L+G Q WG D V W++ L WP I WP Sbjct: 96 CKVMRDGYKTVIFHS-DSDEVDKRRIQLISELEAT---------------NQVSFIPTPTNQH-RSLDLTSILGELSNLGVKELMLEGGPATVKRFLQQKLVDRAIVIVAPIKFDQLPVPSLIDHHVLKAAGLALLGEHQDWGKDSVSLWSKAQLQWPSPVISEWP 244
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Match: A0A2E5X8P4_9EURY (Riboflavin biosynthesis protein RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5X8P4_9EURY) HSP 1 Score: 102 bits (254), Expect = 8.790e-22 Identity = 65/182 (35.71%), Postives = 91/182 (50.00%), Query Frame = 1 Query: 4 QPTRVVLDRTLRLPEGEDCSILRDGYASMVFYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPRDPGEGVPLNGVLEVLSKRGIDHVLVEGGPSVARGFLSEGLVDRAVIVRAPVEFPRPVPSGMTNRTLQLAGLELIGCTQWGDDEVEYWTRPGLNWPGGRIDRWP 549 QP R+VLDR LR+P+ D +L DG +++ + + E R V L +G GV L+ +LE L RG+ +LVEGGP+V R F+ EGLVDRA+I++ SG+++ L AGL LI T WG+D V++W+RP L WP WP Sbjct: 223 QPMRIVLDRNLRIPD--DAIVLTDGGETILVHI----QPEERGVVLPSGTG--------------------------------GVDLSALLEHLGDRGVQELLVEGGPTVWRQFIEEGLVDRAIIIQTSNTLGDGPTSGVSDSKLNQAGLNLIEKTTWGEDSVQFWSRPNLPWP---TKLWP 363 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7269.17265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7269.17265.1 >prot_M-pyrifera_M_contig7269.17265.1 ID=prot_M-pyrifera_M_contig7269.17265.1|Name=mRNA_M-pyrifera_M_contig7269.17265.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp MVFYSAGCEETEARAVELAAGVKASQGPGSSSPRKAAASGDSVDFIGLPPback to top mRNA from alignment at M-pyrifera_M_contig7269:3584..8802+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7269.17265.1 ID=mRNA_M-pyrifera_M_contig7269.17265.1|Name=mRNA_M-pyrifera_M_contig7269.17265.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=5219bp|location=Sequence derived from alignment at M-pyrifera_M_contig7269:3584..8802+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7269:3584..8802+ >mRNA_M-pyrifera_M_contig7269.17265.1 ID=mRNA_M-pyrifera_M_contig7269.17265.1|Name=mRNA_M-pyrifera_M_contig7269.17265.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig7269:3584..8802+ (Macrocystis pyrifera P11B4 male)back to top |