mRNA_M-pyrifera_M_contig72651.17260.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72651.17260.1
Unique NamemRNA_M-pyrifera_M_contig72651.17260.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: D8LH10_ECTSI (Similar to neutral Sphingomyelinase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH10_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 1.590e-30
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    4 RLHASRS----GWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPLMGAGSGGTGLMVLSRFPISESFF 219
            R+HA       GWDVIALQEVWHARERDALRR AL+AGLRYSRHFE GCGAPL+G G GGTGL++LSRFPI+ESFF
Sbjct:  146 RVHAFAKTLGGGWDVIALQEVWHARERDALRRAALAAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRFPITESFF 221          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A6H5L123_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L123_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.360e-30
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    4 RLHASRS----GWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPLMGAGSGGTGLMVLSRFPISESFF 219
            R+HA       GWDVIALQEVWHARERDALRR AL AGLRYSRHFE GCGAPL+G G GGTGL++LSRFPI+ESFF
Sbjct:   56 RVHAFAKTLGGGWDVIALQEVWHARERDALRRAALVAGLRYSRHFEHGCGAPLLGPGMGGTGLLILSRFPITESFF 131          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A0G4IKQ8_PLABS (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IKQ8_PLABS)

HSP 1 Score: 75.5 bits (184), Expect = 4.130e-14
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 ERLHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPLMGAGSGGTGLMVLSRFPISE 210
            ERLH    G+DVIALQEVWHARERDALR     AGL Y+ +F  G G P    GS GTG++VLSR PI +
Sbjct:   78 ERLH----GYDVIALQEVWHARERDALRTAGRQAGLIYAHYFAGGIGFPFW-PGSHGTGVLVLSRLPIVD 142          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A0H5R271_9EUKA (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R271_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.280e-12
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1
Query:   25 GWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPLMGAGSGGTGLMVLSRFPISE 210
            G+DV+ALQEVWH+RERD LR  A S G+ Y+ +F  G GAP    GS GTGL++LS+ PI +
Sbjct:   75 GYDVVALQEVWHSRERDVLRDAARSYGMIYAHYFACGVGAPFW-PGSHGTGLLILSKLPIDD 135          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A8K1CFL7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFL7_PYTOL)

HSP 1 Score: 65.5 bits (158), Expect = 1.400e-10
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 ERLHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPL-MGAGSGGTGLMVLSRFPISESFF 219
            E  +A + G+D++  QE+WH RER+ +   A  AG  Y  +F+   G PL +GAG+ GTGL+V+S+FPI  + +
Sbjct:   72 EIANAIQEGYDIVTFQEIWHRRERNIIITRAEQAGYHYYHYFQPAVGFPLPLGAGAFGTGLLVVSKFPIVSAMY 145          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A1W0A6Q7_9STRA (Transmembrane protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6Q7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.910e-10
Identity = 34/72 (47.22%), Postives = 44/72 (61.11%), Query Frame = 1
Query:    7 LHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPL-MGAGSGGTGLMVLSRFPISESFF 219
            L      WD+IALQEVWH RE+  +   AL AG  YS +F    G PL +G  S GTGL+VLS+F +S + +
Sbjct:   75 LKEKAEDWDIIALQEVWHRREKRIIVNAALRAGFAYSHYFHPAVGFPLPIGHDSFGTGLLVLSKFRLSAAMY 146          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: W2Q0A8_PHYPN (Endo/exonuclease/phosphatase domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2Q0A8_PHYPN)

HSP 1 Score: 62.8 bits (151), Expect = 1.240e-9
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 ERLHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPL-MGAGSGGTGLMVLSRFPISESFF 219
            E   A  S +D++ LQE+WH RER+ +   A  +G  Y  +F    G P  MGA S GTGL++LS+FPIS + +
Sbjct:   68 EIASAISSDFDLVVLQEIWHIRERNLVISKAQKSGFHYYHYFNPAVGFPFPMGADSFGTGLLILSKFPISNALY 141          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A0P1B1B6_PLAHL (Sphingomyelin phosphodiesterase 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B1B6_PLAHL)

HSP 1 Score: 62.0 bits (149), Expect = 2.320e-9
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 ERLHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPL-MGAGSGGTGLMVLSRFPISESFF 219
            E   A  S ++++ LQE+WH RER+ +      +G  Y  +F    G P+ MG  S GTGL+VLS++PIS +FF
Sbjct:   68 EIASAISSDFELVVLQEIWHIRERNLIISKVQQSGFHYYHYFNSAVGFPIPMGPDSFGTGLLVLSKYPISSAFF 141          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A6A3YCH0_9STRA (Endo/exonuclease/phosphatase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YCH0_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.320e-9
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 ERLHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPL-MGAGSGGTGLMVLSRFPISESFF 219
            E   A  S ++++ LQE+WH RER+ +   A  +G  Y  +F    G P  MGA S GTGL+VLS+FPIS + +
Sbjct:   68 EIASAISSDYELVVLQEIWHLRERNLVISKAQQSGFHYYHYFNPAVGFPFPMGADSFGTGLLVLSKFPISSALY 141          
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Match: A0A2D4BY22_PYTIN (Sphingomyelin phosphodiesterase-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BY22_PYTIN)

HSP 1 Score: 61.2 bits (147), Expect = 4.330e-9
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 ERLHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPL-MGAGSGGTGLMVLSRFPISESFFW 222
            E  +A    +D++ LQE+WH RER+ +   A  AG  Y  +F+   G P+  GA S GTGL+VLS++PI  S ++
Sbjct:   64 EIANAIDDSFDIVVLQEIWHRRERNIIIWGAQKAGFEYYHYFQAATGFPIPFGADSFGTGLLVLSKYPIVSSMYY 138          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72651.17260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LH10_ECTSI1.590e-3077.63Similar to neutral Sphingomyelinase, putative n=1 ... [more]
A0A6H5L123_9PHAE7.360e-3077.63Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A0G4IKQ8_PLABS4.130e-1460.00Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A0H5R271_9EUKA1.280e-1256.45Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A8K1CFL7_PYTOL1.400e-1041.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1W0A6Q7_9STRA1.910e-1047.22Transmembrane protein n=1 Tax=Thraustotheca clavat... [more]
W2Q0A8_PHYPN1.240e-943.24Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A0P1B1B6_PLAHL2.320e-941.89Sphingomyelin phosphodiesterase 2 n=1 Tax=Plasmopa... [more]
A0A6A3YCH0_9STRA2.320e-943.24Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A2D4BY22_PYTIN4.330e-941.33Sphingomyelin phosphodiesterase-like protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72651contigM-pyrifera_M_contig72651:554..799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue4.6e-25
Seed eggNOG ortholog2880.D8LH10
Preferred nameSMPD2
KEGG rclassRC00017,RC00425
KEGG koko:K01117,ko:K12351,ko:K12818
KEGG ReactionR02541
KEGG Pathwayko00600,ko01100,ko03040,ko04071,map00600,map01100,map03040,map04071
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004620,GO:0004629,GO:0004767,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005783,GO:0005886,GO:0005887,GO:0005901,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006672,GO:0006684,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0008081,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009605,GO:0009612,GO:0009628,GO:0009651,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010941,GO:0010942,GO:0012505,GO:0016020,GO:0016021,GO:0016042,GO:0016298,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019637,GO:0019867,GO:0023052,GO:0030148,GO:0030149,GO:0031090,GO:0031224,GO:0031226,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032995,GO:0034248,GO:0034250,GO:0034641,GO:0035556,GO:0042578,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044087,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044459,GO:0044464,GO:0044853,GO:0045121,GO:0045834,GO:0046466,GO:0046467,GO:0046513,GO:0046519,GO:0046521,GO:0046889,GO:0046890,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051716,GO:0052712,GO:0052713,GO:0052714,GO:0060255,GO:0065007,GO:0071704,GO:0071944,GO:0080090,GO:0090153,GO:0090154,GO:0097164,GO:0098573,GO:0098588,GO:0098589,GO:0098590,GO:0098805,GO:0098857,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1903338,GO:1905038,GO:2000303,GO:2000304
EggNOG free text desc.inositol phosphosphingolipid phospholipase activity
EggNOG OGsKOG3873@1,KOG3873@2759
EC3.1.4.12,3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.8923912-CDS-M-pyrifera_M_contig72651:553..7991622816622.8923912-CDS-M-pyrifera_M_contig72651:553..799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72651 554..799 -
1692278082.7696993-CDS-M-pyrifera_M_contig72651:553..7991692278082.7696993-CDS-M-pyrifera_M_contig72651:553..799Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72651 554..799 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72651.17260.1prot_M-pyrifera_M_contig72651.17260.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72651 554..799 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72651.17260.1

>prot_M-pyrifera_M_contig72651.17260.1 ID=prot_M-pyrifera_M_contig72651.17260.1|Name=mRNA_M-pyrifera_M_contig72651.17260.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=82bp
ERLHASRSGWDVIALQEVWHARERDALRRMALSAGLRYSRHFEKGCGAPL
MGAGSGGTGLMVLSRFPISESFFWVSFMFSM*
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mRNA from alignment at M-pyrifera_M_contig72651:554..799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72651.17260.1 ID=mRNA_M-pyrifera_M_contig72651.17260.1|Name=mRNA_M-pyrifera_M_contig72651.17260.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=246bp|location=Sequence derived from alignment at M-pyrifera_M_contig72651:554..799- (Macrocystis pyrifera P11B4 male)
GAACGCCTACATGCCTCGCGCAGCGGCTGGGACGTCATCGCGCTACAAGA AGTGTGGCACGCACGCGAACGAGACGCGCTGCGGCGAATGGCGCTGTCGG CCGGCCTAAGGTACAGCCGCCACTTCGAGAAGGGCTGCGGAGCGCCCCTC ATGGGGGCGGGGTCCGGGGGCACGGGCCTGATGGTGCTCTCTCGCTTCCC CATCTCGGAGAGCTTTTTCTGGGTGAGTTTTATGTTCTCCATGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72651:554..799-

>mRNA_M-pyrifera_M_contig72651.17260.1 ID=mRNA_M-pyrifera_M_contig72651.17260.1|Name=mRNA_M-pyrifera_M_contig72651.17260.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig72651:554..799- (Macrocystis pyrifera P11B4 male)
GAACGCCTACATGCCTCGCGCAGCGGCTGGGACGTCATCGCGCTACAAGA
AGTGTGGCACGCACGCGAACGAGACGCGCTGCGGCGAATGGCGCTGTCGG
CCGGCCTAAGGTACAGCCGCCACTTCGAGAAGGGCTGCGGAGCGCCCCTC
ATGGGGGCGGGGTCCGGGGGCACGGGCCTGATGGTGCTCTCTCGCTTCCC
CATCTCGGAGAGCTTTTTCTGGGTGAGTTTTATGTTCTCCATGTAGGAAC
GCCTACATGCCTCGCGCAGCGGCTGGGACGTCATCGCGCTACAAGAAGTG
TGGCACGCACGCGAACGAGACGCGCTGCGGCGAATGGCGCTGTCGGCCGG
CCTAAGGTACAGCCGCCACTTCGAGAAGGGCTGCGGAGCGCCCCTCATGG
GGGCGGGGTCCGGGGGCACGGGCCTGATGGTGCTCTCTCGCTTCCCCATC
TCGGAGAGCTTTTTCTGGGTGAGTTTTATGTTCTCCATGTAG
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