mRNA_M-pyrifera_M_contig72637.17258.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72637.17258.1
Unique NamemRNA_M-pyrifera_M_contig72637.17258.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: A0A814USW1_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A814USW1_9BILA)

HSP 1 Score: 139 bits (349), Expect = 4.010e-37
Identity = 68/132 (51.52%), Postives = 92/132 (69.70%), Query Frame = 1
Query:    1 WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTP 396
            W + ++PGPL+ +E   FYE G+++K  +L++E+L  V   ++RLVD LA+ L   GKI D   + GF +RL+A+E  F  ASVLLHK G+LPAE+AALW    L+G+AKQLLG E  I  HPVWN+RTK P
Sbjct:   22 WIREFTPGPLTPDELNQFYEDGFVLKPNLLTKEQLDSVINGLERLVDELAQELFKAGKINDLCENIGFYQRLTAIESQFPAASVLLHKRGILPAEIAALWSCDALLGVAKQLLGTE--IAGHPVWNIRTKVP 151          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: A0A815ZXQ9_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815ZXQ9_ADIRI)

HSP 1 Score: 133 bits (334), Expect = 5.820e-35
Identity = 64/132 (48.48%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTP 396
            W + Y PGPL++ E +  +E G++IK  +L  ++L+ V   ++R VD LA+ L+  GKI + + + GF +RL+A++  F NASVLLHK GVLP EVA+LW    L+ +AKQLLG +  I  HPVWNLRTK P
Sbjct:   16 WERDYEPGPLTENEFKQLFEDGFVIKHDLLKRDQLKSVIHGIERAVDELAQDLYRAGKIENLYENVGFYQRLTAIDAQFPNASVLLHKRGVLPPEVASLWASDALLDVAKQLLGPD--IAGHPVWNLRTKVP 145          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: A0A7J7Q486_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q486_9CHLO)

HSP 1 Score: 131 bits (329), Expect = 6.280e-34
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    1 WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTPQ 399
            W +PY+ GPL+++E E ++ HG+++K+  L + +L+P   A+DR VD LA +L A G I D  +  G  +RL+ALE+ F  A VL+HKDG LP E AALW    L+ IA+QLLG + G   HP WN+R KTP+
Sbjct:   25 WRRPYTAGPLTEDEFEQYWNHGYVVKQGCLQQHDLQPSLDAIDRRVDNLAAKLQAAGLIRDPCSSLGVFQRLTALEQQFPEAGVLVHKDGRLPPEFAALWTHPALLAIAQQLLGPDVG--GHPSWNVRAKTPR 155          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: I0YW22_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YW22_COCSC)

HSP 1 Score: 130 bits (326), Expect = 9.580e-34
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    1 WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTPQ 399
            W +P++ G L++EE + +++ G+++K+ +LS+E+L  V  A++R VD +AE LH  GKI D   D  F  RL+ LE  F +ASVL+HK G+LP E+A LW    LM  AKQ LG +  +  HPVWNLR KTPQ
Sbjct:   17 WRRPFTEGVLTEEELQQYWDEGFVVKKDLLSKEQLDAVKNAINRSVDKVAELLHKAGKIQDLCEDADFFTRLTKLEAQFPSASVLVHKQGILPPEIATLWSSPALMSAAKQFLGGD--VAGHPVWNLRAKTPQ 147          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: A0A383WF13_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WF13_TETOB)

HSP 1 Score: 128 bits (321), Expect = 4.920e-33
Identity = 62/133 (46.62%), Postives = 88/133 (66.17%), Query Frame = 1
Query:    1 WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTPQ 399
            W +PY+ GPL+ +E E ++ HG+++K+  L  ++L+P    + R VD LA +L A G I+D  +  G  +RL+ALE+ F +A VL+HKDG LP E AALW   TL+ IA+QLLG   G   HP WN+R KTP+
Sbjct:    8 WRRPYTAGPLTADEAEQYWSHGYVVKQGCLQMQDLQPSLEVIARRVDDLAAKLQAAGLISDPCSSLGVFQRLAALEQQFPDAGVLVHKDGRLPPEFAALWSHPTLLAIAQQLLGPHVG--GHPSWNVRAKTPR 138          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: A0A821PBB1_9BILA (Hypothetical protein n=4 Tax=unclassified Rotaria TaxID=2631648 RepID=A0A821PBB1_9BILA)

HSP 1 Score: 128 bits (321), Expect = 5.190e-33
Identity = 58/132 (43.94%), Postives = 90/132 (68.18%), Query Frame = 1
Query:    1 WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTP 396
            W + Y+PGPL+++E   F+E G++IK  +L+ + L      ++++VD +A+ L   GKI D H +K F +RL+A++  F +ASVL+HK G+LP E+A+LW   +L+ +AKQLLG +  I  HPVWN+R K P
Sbjct:   21 WQREYTPGPLTEDEFRQFFEDGFVIKRDLLTRDLLESAIHGIEKVVDEVAQDLFKAGKIQDLHENKNFYQRLTAIDAQFPSASVLMHKRGILPPEIASLWSSQSLLSVAKQLLGPD--IAGHPVWNIRPKIP 150          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: A0A7S0FBA3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FBA3_9DINO)

HSP 1 Score: 123 bits (308), Expect = 6.050e-33
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 1
Query:   70 LIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTPQ 399
            +I   ++  E L     AV++LVD LAERLHA GKI+  HAD GF+ RL+ LE +F +ASVLLHK+GVLP  +  +WG   LMGIA+QLLG E  I  H VWNLR KTP+
Sbjct:    1 VIVHDIIPREALDAAVAAVEQLVDNLAERLHAAGKISSLHADAGFERRLTRLEEEFPHASVLLHKNGVLPKGIQNVWGHPVLMGIAEQLLGAEVDIAGHLVWNLRCKTPE 110          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: A0A819NPQ8_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819NPQ8_9BILA)

HSP 1 Score: 122 bits (305), Expect = 1.230e-32
Identity = 57/130 (43.85%), Postives = 85/130 (65.38%), Query Frame = 1
Query:    1 WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTK 390
            W + Y+PGPL+K+E   F+E G++IK  +L+ + L      ++++VD +A+ L    KI D H +  F +RL+A+E  F +ASVL+HK G+LP E+A+LW    L+ +AKQLLG    I  HPVWN+R K
Sbjct:   21 WQREYTPGPLTKDEFRQFFEDGFVIKHDLLTHDLLESTIHGIEKVVDEVAQDLFRADKIHDLHENTNFYQRLTAIEAQFPSASVLMHKRGILPCEIASLWSSQPLLSVAKQLLGPN--IAGHPVWNIRPK 148          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: UPI00201F9561 (phytanoyl-CoA dioxygenase domain-containing protein 1-like n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F9561)

HSP 1 Score: 125 bits (315), Expect = 3.610e-32
Identity = 59/127 (46.46%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   19 PGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTPQ 399
            PG L+K + + F++ G+LI ++  S+EEL P   A+++ V+ LA++L+ GGKI + + DKG  ERLS +E++F  A+V+LHK G+LP E  A+W    L+ + +QL+G    I  HPVWNLRTKTPQ
Sbjct:   32 PGQLTKAQVDHFFDKGYLIVDKFFSKEELDPCRKAIEKQVEDLAQKLYKGGKIKNLYQDKGLFERLSFIEKEFPGANVILHKAGILPPEFRAVWSNDRLLNLVEQLVGPN--IAGHPVWNLRTKTPQ 156          
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Match: UPI001EE5A777 (LOW QUALITY PROTEIN: phytanoyl-CoA dioxygenase domain-containing protein 1-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5A777)

HSP 1 Score: 125 bits (315), Expect = 3.670e-32
Identity = 59/127 (46.46%), Postives = 88/127 (69.29%), Query Frame = 1
Query:   19 PGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLAERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALWGGSTLMGIAKQLLGQEEGILAHPVWNLRTKTPQ 399
            PG L+K + + F++ G+LI E+  S+EEL P   A+++LV+ LA++L+ GGKI + + DKG  ERLS +E++F  A+++LHK G LP    A+W    L+ + +QL+G +  I  HPVWNLRTKTPQ
Sbjct:   33 PGQLTKAQVDHFFDKGYLIVEKFFSKEELDPCREAIEKLVEDLAQKLYRGGKIKNLYKDKGLFERLSFIEKEFPGANIILHKAGTLPPAFRAVWSNERLLNLVEQLVGPK--IAGHPVWNLRTKTPQ 157          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72637.17258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A814USW1_9BILA4.010e-3751.52Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A815ZXQ9_ADIRI5.820e-3548.48Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A7J7Q486_9CHLO6.280e-3447.37Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
I0YW22_COCSC9.580e-3447.37Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A383WF13_TETOB4.920e-3346.62Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A821PBB1_9BILA5.190e-3343.94Hypothetical protein n=4 Tax=unclassified Rotaria ... [more]
A0A7S0FBA3_9DINO6.050e-3355.45Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A819NPQ8_9BILA1.230e-3243.85Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]
UPI00201F95613.610e-3246.46phytanoyl-CoA dioxygenase domain-containing protei... [more]
UPI001EE5A7773.670e-3246.46LOW QUALITY PROTEIN: phytanoyl-CoA dioxygenase dom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72637contigM-pyrifera_M_contig72637:518..1026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue7.2e-28
Seed eggNOG ortholog248742.XP_005647135.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Phytanoyl-CoA dioxygenase (PhyH)
EggNOG OGs2CM7M@1,2QPIZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.8102486-CDS-M-pyrifera_M_contig72637:517..5541622816622.8102486-CDS-M-pyrifera_M_contig72637:517..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72637 518..554 +
1692278082.7320096-CDS-M-pyrifera_M_contig72637:517..5541692278082.7320096-CDS-M-pyrifera_M_contig72637:517..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72637 518..554 +
1622816622.8230164-CDS-M-pyrifera_M_contig72637:664..10261622816622.8230164-CDS-M-pyrifera_M_contig72637:664..1026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72637 665..1026 +
1692278082.7444367-CDS-M-pyrifera_M_contig72637:664..10261692278082.7444367-CDS-M-pyrifera_M_contig72637:664..1026Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72637 665..1026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72637.17258.1prot_M-pyrifera_M_contig72637.17258.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72637 518..1026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72637.17258.1

>prot_M-pyrifera_M_contig72637.17258.1 ID=prot_M-pyrifera_M_contig72637.17258.1|Name=mRNA_M-pyrifera_M_contig72637.17258.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=133bp
WTQPYSPGPLSKEECEFFYEHGWLIKERVLSEEELRPVCGAVDRLVDGLA
ERLHAGGKIADKHADKGFDERLSALERDFHNASVLLHKDGVLPAEVAALW
GGSTLMGIAKQLLGQEEGILAHPVWNLRTKTPQ
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mRNA from alignment at M-pyrifera_M_contig72637:518..1026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72637.17258.1 ID=mRNA_M-pyrifera_M_contig72637.17258.1|Name=mRNA_M-pyrifera_M_contig72637.17258.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=509bp|location=Sequence derived from alignment at M-pyrifera_M_contig72637:518..1026+ (Macrocystis pyrifera P11B4 male)
TGGACGCAACCCTACTCTCCGGGCCCTCTGTCGAAAGGTTAGTGGGCAGG GATGTGGAATTTGGCGGTTGTTGGTGGTTGAGGGTTGTTGGTTTGGGTGG ATCGAGTGGGTGTTTTTGGATATGGGTGGTATTGTTTTGGAGTGCAGAAG AGTGCGAGTTTTTCTATGAGCACGGTTGGCTGATCAAGGAGCGCGTGTTG TCGGAGGAGGAACTGCGTCCGGTTTGCGGCGCCGTGGACCGTCTGGTGGA CGGATTGGCGGAGCGCCTGCATGCGGGTGGTAAGATTGCGGACAAGCATG CGGACAAGGGGTTCGATGAGCGACTGAGTGCGCTGGAACGCGATTTCCAC AACGCCTCGGTGCTTCTGCACAAGGACGGGGTGCTCCCAGCCGAGGTCGC GGCACTCTGGGGAGGCTCCACTCTCATGGGCATCGCAAAGCAGCTCCTGG GACAGGAAGAGGGCATCCTCGCACACCCCGTCTGGAACCTCCGCACCAAA ACCCCTCAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72637:518..1026+

>mRNA_M-pyrifera_M_contig72637.17258.1 ID=mRNA_M-pyrifera_M_contig72637.17258.1|Name=mRNA_M-pyrifera_M_contig72637.17258.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=798bp|location=Sequence derived from alignment at M-pyrifera_M_contig72637:518..1026+ (Macrocystis pyrifera P11B4 male)
TGGACGCAACCCTACTCTCCGGGCCCTCTGTCGAAAGTGGACGCAACCCT
ACTCTCCGGGCCCTCTGTCGAAAGAAGAGTGCGAGTTTTTCTATGAGCAC
GGTTGGCTGATCAAGGAGCGCGTGTTGTCGGAGGAGGAACTGCGTCCGGT
TTGCGGCGCCGTGGACCGTCTGGTGGACGGATTGGCGGAGCGCCTGCATG
CGGGTGGTAAGATTGCGGACAAGCATGCGGACAAGGGGTTCGATGAGCGA
CTGAGTGCGCTGGAACGCGATTTCCACAACGCCTCGGTGCTTCTGCACAA
GGACGGGGTGCTCCCAGCCGAGGTCGCGGCACTCTGGGGAGGCTCCACTC
TCATGGGCATCGCAAAGCAGCTCCTGGGACAGGAAGAGGGCATCCTCGCA
CACCCCGTCTGGAACCTCCGCACCAAAACCCCTCAAAAGAGTGCGAGTTT
TTCTATGAGCACGGTTGGCTGATCAAGGAGCGCGTGTTGTCGGAGGAGGA
ACTGCGTCCGGTTTGCGGCGCCGTGGACCGTCTGGTGGACGGATTGGCGG
AGCGCCTGCATGCGGGTGGTAAGATTGCGGACAAGCATGCGGACAAGGGG
TTCGATGAGCGACTGAGTGCGCTGGAACGCGATTTCCACAACGCCTCGGT
GCTTCTGCACAAGGACGGGGTGCTCCCAGCCGAGGTCGCGGCACTCTGGG
GAGGCTCCACTCTCATGGGCATCGCAAAGCAGCTCCTGGGACAGGAAGAG
GGCATCCTCGCACACCCCGTCTGGAACCTCCGCACCAAAACCCCTCAA
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