mRNA_M-pyrifera_M_contig72596.17250.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72596.17250.1
Unique NamemRNA_M-pyrifera_M_contig72596.17250.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A5A8EH26_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EH26_CAFRO)

HSP 1 Score: 182 bits (461), Expect = 7.390e-51
Identity = 89/116 (76.72%), Postives = 96/116 (82.76%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMESEAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV N+ARWPLMIDPQLQGIKWV K E E  L  VR GQK ML  LE AI++G PVLIENMGE IEAVLNPVI+RATTKRG  R TLQLGDKE+DY+P FRLYLHTKL NPHYPPE+
Sbjct: 3039 IVTNTARWPLMIDPQLQGIKWVMKHEEENDLKVVRQGQKKMLATLEAAIASGAPVLIENMGERIEAVLNPVISRATTKRGASRFTLQLGDKEVDYHPDFRLYLHTKLSNPHYPPEV 3154          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A482UFV3_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UFV3_9ARCH)

HSP 1 Score: 158 bits (400), Expect = 8.260e-43
Identity = 78/116 (67.24%), Postives = 91/116 (78.45%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMESEAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV  + RWPL+IDPQLQGI WV + E E GL  +RL QKDMLRRLE A+  G PVLIENMGE I+AVL PVIARA  K+G  +  L+LGDKE+++NP FRLYLHTKL NPHYPPE+
Sbjct:   71 IVTATERWPLLIDPQLQGITWVREKEKENGLLIMRLDQKDMLRRLESALERGVPVLIENMGERIDAVLQPVIARALIKKGRNQY-LKLGDKEVEFNPKFRLYLHTKLSNPHYPPEV 185          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: B5YNU5_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNU5_THAPS)

HSP 1 Score: 155 bits (393), Expect = 1.070e-41
Identity = 77/118 (65.25%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMES--EAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            +V NS+RWPL+IDPQLQGIKW+ + ES  E  L  VRLGQKD++R+LE A+ NG  +LIEN+GE+I+AVL PVI RAT KRG  +L ++LGDKE D++P FRLYL TKL NPHYPPEI
Sbjct: 2189 LVTNSSRWPLIIDPQLQGIKWIKQKESAPERNLQIVRLGQKDLIRKLEIALENGYTILIENLGETIDAVLMPVIQRATVKRGT-KLFIKLGDKECDFHPDFRLYLQTKLSNPHYPPEI 2305          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A7S3XWP9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWP9_HETAK)

HSP 1 Score: 155 bits (392), Expect = 1.450e-41
Identity = 77/118 (65.25%), Postives = 95/118 (80.51%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMES--EAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV+ S RWPLMIDPQLQGI W+ +ME   E  L  VRLGQKD+LR+L+ A+ NG  +LIEN+GESI+AVLNPVI RAT +RG  +  L+LGD E+++NP+FRL+LHTKL NPHYPPEI
Sbjct: 1187 IVQASTRWPLMIDPQLQGIAWIRRMEETPERNLQIVRLGQKDILRKLQAALENGWSILIENLGESIDAVLNPVIQRATIRRGKKQY-LKLGDTEVEFNPNFRLFLHTKLSNPHYPPEI 1303          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A836CGE4_9STRA (Dynein heavy chain family dynein heavy chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGE4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.000e-41
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMESEA--GLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV NSARWPL+IDPQLQGIKW+   ES A   L  VRLGQ DMLR+LE A+ NG  +LIEN+GES+EAVLNPVI RA   RG  ++ L+LGD E++++P FRL+LHTKL NPHYPPE+
Sbjct: 2865 IVCNSARWPLIIDPQLQGIKWIKNRESGADRNLQVVRLGQPDMLRKLERALENGHSILIENLGESLEAVLNPVIQRAIIYRG-RKMFLKLGDTEVEFHPDFRLFLHTKLSNPHYPPEV 2981          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A7S2QUS9_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QUS9_9STRA)

HSP 1 Score: 153 bits (386), Expect = 9.450e-41
Identity = 74/118 (62.71%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMES--EAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV NS+RWPLMIDPQLQGI W+   ES  +  L  VRLGQKD++R+LE A+  G  ++IEN+GE++EAVLNPV+ RAT KRG  +  +++GDKE D++P+FRLYLHTKL NPHYPPEI
Sbjct: 2988 IVCNSSRWPLMIDPQLQGIAWIRNKESGEDRDLQIVRLGQKDLIRKLERALDRGTVLMIENLGETLEAVLNPVVQRATIKRG-SKYFIKVGDKECDFHPNFRLYLHTKLGNPHYPPEI 3104          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A482RXR9_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXR9_9ARCH)

HSP 1 Score: 152 bits (384), Expect = 1.740e-40
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMES--EAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV NSARWPL+IDPQLQGIKW+ + ES  E  L  VRLGQ D+LR+LE A+ NG  +LIEN+GESI+AVLNPVI RA  KRG  +  L+LGD E++++  F+LYLHTKL NPHYPPEI
Sbjct: 1430 IVCNSARWPLIIDPQLQGIKWLRQKESPAERNLQVVRLGQNDLLRKLERALENGYTILIENIGESIDAVLNPVIQRAVIKRGKKQY-LKLGDTEVEFHKDFKLYLHTKLSNPHYPPEI 1546          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A7S2FVH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FVH1_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.030e-40
Identity = 73/118 (61.86%), Postives = 91/118 (77.12%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMES--EAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV ++ARWPL+IDPQLQGIKW+   ES  E  L  VRLGQ D+LR+L  A+ NG  +LIEN+GE ++AVLNPVI RAT KRG   L ++LGD E++ NP+FRL+LHTKL NP YPPE+
Sbjct:  178 IVCSTARWPLIIDPQLQGIKWIRTKESAPERNLEVVRLGQSDLLRKLTRALENGHSILIENLGEKLDAVLNPVIQRATIKRG-RVLYVKLGDSEVEMNPNFRLFLHTKLNNPDYPPEV 294          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: A0A7S4HE51_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HE51_9EUKA)

HSP 1 Score: 145 bits (366), Expect = 1.100e-39
Identity = 71/116 (61.21%), Postives = 86/116 (74.14%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMESEAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV N ARWPL+IDPQLQGI+W+ K E + GL   RLGQK ++ +L   I NG PV+IEN+   ++AVLNPVI R T KRG   L ++LGDKE+DY+  FRLYL TKL NPHYPPEI
Sbjct:   51 IVCNCARWPLLIDPQLQGIRWIKKHEEKRGLKVCRLGQKTLMGQLSQGIENGIPVIIENIQLIVDAVLNPVIGRQTIKRG-RNLVIKLGDKEVDYHKDFRLYLQTKLSNPHYPPEI 165          
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Match: D7FRX0_ECTSI (Dynein heavy chain family dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX0_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 1.130e-39
Identity = 73/118 (61.86%), Postives = 92/118 (77.97%), Query Frame = 1
Query:    1 IVRNSARWPLMIDPQLQGIKWVTKMES--EAGLATVRLGQKDMLRRLEHAISNGEPVLIENMGESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNPHYPPEI 348
            IV NSARWPL+IDPQLQGIKW+   E+  E  L  VRLGQ DMLR+LE A+ NG  +LIEN+GE++EAVL PVI RA   RG  ++ ++LGD E++++P FRL+LHTKL NPH+PPEI
Sbjct: 2777 IVTNSARWPLIIDPQLQGIKWIRTKEASPERNLEVVRLGQPDMLRKLEKALENGHSILIENLGETLEAVLTPVIQRAVIYRG-RKMYIKLGDSEVEFHPDFRLFLHTKLSNPHFPPEI 2893          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72596.17250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8EH26_CAFRO7.390e-5176.72Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A482UFV3_9ARCH8.260e-4367.24Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
B5YNU5_THAPS1.070e-4165.25Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7S3XWP9_HETAK1.450e-4165.25Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CGE4_9STRA2.000e-4165.25Dynein heavy chain family dynein heavy chain n=1 T... [more]
A0A7S2QUS9_9STRA9.450e-4162.71Hypothetical protein n=1 Tax=Triparma pacifica Tax... [more]
A0A482RXR9_9ARCH1.740e-4065.25Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A7S2FVH1_9STRA6.030e-4061.86Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S4HE51_9EUKA1.100e-3961.21Hypothetical protein (Fragment) n=1 Tax=Prymnesium... [more]
D7FRX0_ECTSI1.130e-3961.86Dynein heavy chain family dynein heavy chain n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72596contigM-pyrifera_M_contig72596:723..1070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog35128.Thaps35342
Preferred nameODA-DHCA
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size348
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.4267375-CDS-M-pyrifera_M_contig72596:722..10401622816622.4267375-CDS-M-pyrifera_M_contig72596:722..1040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72596 723..1040 -
1692278082.5266047-CDS-M-pyrifera_M_contig72596:722..10401692278082.5266047-CDS-M-pyrifera_M_contig72596:722..1040Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72596 723..1040 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.4374065-UTR-M-pyrifera_M_contig72596:1040..10701622816622.4374065-UTR-M-pyrifera_M_contig72596:1040..1070Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72596 1041..1070 -
1692278082.5380735-UTR-M-pyrifera_M_contig72596:1040..10701692278082.5380735-UTR-M-pyrifera_M_contig72596:1040..1070Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72596 1041..1070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72596.17250.1prot_M-pyrifera_M_contig72596.17250.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72596 723..1040 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72596.17250.1

>prot_M-pyrifera_M_contig72596.17250.1 ID=prot_M-pyrifera_M_contig72596.17250.1|Name=mRNA_M-pyrifera_M_contig72596.17250.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MIDPQLQGIKWVTKMESEAGLATVRLGQKDMLRRLEHAISNGEPVLIENM
GESIEAVLNPVIARATTKRGVGRLTLQLGDKEIDYNPSFRLYLHTKLPNP
HYPPEI
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mRNA from alignment at M-pyrifera_M_contig72596:723..1070-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72596.17250.1 ID=mRNA_M-pyrifera_M_contig72596.17250.1|Name=mRNA_M-pyrifera_M_contig72596.17250.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig72596:723..1070- (Macrocystis pyrifera P11B4 male)
ATTGTGCGCAACTCGGCTCGTTGGCCATTAATGATTGACCCACAATTGCA AGGAATCAAGTGGGTTACAAAGATGGAATCTGAAGCTGGGCTTGCGACAG TGCGATTGGGCCAGAAAGATATGCTTCGTCGTCTTGAACATGCGATTAGC AATGGTGAACCTGTATTGATTGAAAACATGGGTGAGAGTATCGAAGCTGT GTTGAACCCAGTCATTGCTCGTGCAACAACCAAACGTGGTGTTGGTCGTC TCACTCTCCAACTTGGAGACAAGGAAATTGACTACAACCCTAGCTTCCGC CTCTACCTCCACACCAAACTCCCCAACCCTCACTACCCTCCAGAAATC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72596:723..1070-

>mRNA_M-pyrifera_M_contig72596.17250.1 ID=mRNA_M-pyrifera_M_contig72596.17250.1|Name=mRNA_M-pyrifera_M_contig72596.17250.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig72596:723..1070- (Macrocystis pyrifera P11B4 male)
ATGATTGACCCACAATTGCAAGGAATCAAGTGGGTTACAAAGATGGAATC
TGAAGCTGGGCTTGCGACAGTGCGATTGGGCCAGAAAGATATGCTTCGTC
GTCTTGAACATGCGATTAGCAATGGTGAACCTGTATTGATTGAAAACATG
GGTGAGAGTATCGAAGCTGTGTTGAACCCAGTCATTGCTCGTGCAACAAC
CAAACGTGGTGTTGGTCGTCTCACTCTCCAACTTGGAGACAAGGAAATTG
ACTACAACCCTAGCTTCCGCCTCTACCTCCACACCAAACTCCCCAACCCT
CACTACCCTCCAGAAATCATGATTGACCCACAATTGCAAGGAATCAAGTG
GGTTACAAAGATGGAATCTGAAGCTGGGCTTGCGACAGTGCGATTGGGCC
AGAAAGATATGCTTCGTCGTCTTGAACATGCGATTAGCAATGGTGAACCT
GTATTGATTGAAAACATGGGTGAGAGTATCGAAGCTGTGTTGAACCCAGT
CATTGCTCGTGCAACAACCAAACGTGGTGTTGGTCGTCTCACTCTCCAAC
TTGGAGACAAGGAAATTGACTACAACCCTAGCTTCCGCCTCTACCTCCAC
ACCAAACTCCCCAACCCTCACTACCCTCCAGAAATC
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