mRNA_M-pyrifera_M_contig7257.17246.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7257.17246.1
Unique NamemRNA_M-pyrifera_M_contig7257.17246.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7257.17246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7257contigM-pyrifera_M_contig7257:7188..7719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size393
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.2748866-CDS-M-pyrifera_M_contig7257:7187..75801622816622.2748866-CDS-M-pyrifera_M_contig7257:7187..7580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7257 7188..7580 +
1692278082.472758-CDS-M-pyrifera_M_contig7257:7187..75801692278082.472758-CDS-M-pyrifera_M_contig7257:7187..7580Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7257 7188..7580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816622.2869232-UTR-M-pyrifera_M_contig7257:7580..77191622816622.2869232-UTR-M-pyrifera_M_contig7257:7580..7719Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7257 7581..7719 +
1692278082.4805744-UTR-M-pyrifera_M_contig7257:7580..77191692278082.4805744-UTR-M-pyrifera_M_contig7257:7580..7719Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7257 7581..7719 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7257.17246.1prot_M-pyrifera_M_contig7257.17246.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7257 7188..7580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7257.17246.1

>prot_M-pyrifera_M_contig7257.17246.1 ID=prot_M-pyrifera_M_contig7257.17246.1|Name=mRNA_M-pyrifera_M_contig7257.17246.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=131bp
LPVSGHITASGCLVAVECLSGGCATESTTTPRPLEAGLINWDEGYNSYLF
HRTSVLFITILLLLRVTGRRSIFSNCGPPLASASYLARLAAIVRKNFITS
YTEQKHTLQAICAKSRLLKLKNKTYTCTRA*
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mRNA from alignment at M-pyrifera_M_contig7257:7188..7719+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7257.17246.1 ID=mRNA_M-pyrifera_M_contig7257.17246.1|Name=mRNA_M-pyrifera_M_contig7257.17246.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=532bp|location=Sequence derived from alignment at M-pyrifera_M_contig7257:7188..7719+ (Macrocystis pyrifera P11B4 male)
TTACCCGTGTCTGGTCATATCACTGCCTCTGGATGCCTTGTTGCGGTTGA
ATGTTTGTCGGGGGGATGCGCGACTGAATCGACAACAACGCCGAGACCCT
TGGAGGCGGGCCTCATAAATTGGGACGAAGGCTACAACTCTTATCTCTTC
CACCGGACGTCTGTGCTGTTCATCACCATACTCCTGCTCCTGAGAGTTAC
CGGACGACGATCTATTTTCTCAAATTGCGGCCCTCCCTTGGCCTCCGCCT
CTTACCTGGCCCGACTCGCTGCTATCGTAAGGAAAAATTTCATAACATCT
TACACCGAGCAAAAGCACACCCTACAAGCGATCTGCGCGAAATCACGCCT
GTTGAAGCTAAAAAACAAGACGTATACCTGCACGCGCGCATAACGAAATG
TGTATTGCCTTTCCCGACGGCCAGCCAGCCACAAGCTATCCCAGAATGTG
GAAATGCCCCCGACAAAAGCAAAATCAGTGCAGCATGTGTATCTGTTGCA
TGTACCATACCCGCCCCACAACCACCACCCAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7257:7188..7719+

>mRNA_M-pyrifera_M_contig7257.17246.1 ID=mRNA_M-pyrifera_M_contig7257.17246.1|Name=mRNA_M-pyrifera_M_contig7257.17246.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=786bp|location=Sequence derived from alignment at M-pyrifera_M_contig7257:7188..7719+ (Macrocystis pyrifera P11B4 male)
TTACCCGTGTCTGGTCATATCACTGCCTCTGGATGCCTTGTTGCGGTTGA
ATGTTTGTCGGGGGGATGCGCGACTGAATCGACAACAACGCCGAGACCCT
TGGAGGCGGGCCTCATAAATTGGGACGAAGGCTACAACTCTTATCTCTTC
CACCGGACGTCTGTGCTGTTCATCACCATACTCCTGCTCCTGAGAGTTAC
CGGACGACGATCTATTTTCTCAAATTGCGGCCCTCCCTTGGCCTCCGCCT
CTTACCTGGCCCGACTCGCTGCTATCGTAAGGAAAAATTTCATAACATCT
TACACCGAGCAAAAGCACACCCTACAAGCGATCTGCGCGAAATCACGCCT
GTTGAAGCTAAAAAACAAGACGTATACCTGCACGCGCGCATAATTACCCG
TGTCTGGTCATATCACTGCCTCTGGATGCCTTGTTGCGGTTGAATGTTTG
TCGGGGGGATGCGCGACTGAATCGACAACAACGCCGAGACCCTTGGAGGC
GGGCCTCATAAATTGGGACGAAGGCTACAACTCTTATCTCTTCCACCGGA
CGTCTGTGCTGTTCATCACCATACTCCTGCTCCTGAGAGTTACCGGACGA
CGATCTATTTTCTCAAATTGCGGCCCTCCCTTGGCCTCCGCCTCTTACCT
GGCCCGACTCGCTGCTATCGTAAGGAAAAATTTCATAACATCTTACACCG
AGCAAAAGCACACCCTACAAGCGATCTGCGCGAAATCACGCCTGTTGAAG
CTAAAAAACAAGACGTATACCTGCACGCGCGCATAA
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