mRNA_M-pyrifera_M_contig72510.17237.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72510.17237.1
Unique NamemRNA_M-pyrifera_M_contig72510.17237.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72510.17237.1 vs. uniprot
Match: A0A2S5BB79_9BASI (WES_acyltransf domain-containing protein n=1 Tax=Rhodotorula taiwanensis TaxID=741276 RepID=A0A2S5BB79_9BASI)

HSP 1 Score: 52.8 bits (125), Expect = 2.190e-5
Identity = 40/116 (34.48%), Postives = 60/116 (51.72%), Query Frame = 1 
Query:   73 TEKPLWRVVLCPGSDESSIGVIVAMNHVLADGTTGSFLVRE---LLRAMSGEEFE-AGEVPLAPAVEDVVDMRPTVGILAGL----LIADKLPWLVACTKAVTDFFSPPPPPLLGP 396
            +++PLWRV L PG D  S  V++A++HV+ADGT    L  +   LLRA  G   +   +  LAPA+E ++ ++P+    A L    L+   LP  +     +     PP  PL  P
Sbjct:  114 SQQPLWRVWLFPGPDSGSSRVVLAVHHVVADGTGVRNLFSDFLSLLRAPYGTATDNKNDGALAPAMESLLPIQPSFIDTAKLAWSELVLPNLPTFLRPATTLIHLGKPPVHPLKQP 229
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72510.17237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2S5BB79_9BASI2.190e-534.48WES_acyltransf domain-containing protein n=1 Tax=R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72510contigM-pyrifera_M_contig72510:104..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.8860207-CDS-M-pyrifera_M_contig72510:103..4991622816621.8860207-CDS-M-pyrifera_M_contig72510:103..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72510 104..499 -
1692278082.2880425-CDS-M-pyrifera_M_contig72510:103..4991692278082.2880425-CDS-M-pyrifera_M_contig72510:103..499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72510 104..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72510.17237.1prot_M-pyrifera_M_contig72510.17237.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72510 104..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72510.17237.1

>prot_M-pyrifera_M_contig72510.17237.1 ID=prot_M-pyrifera_M_contig72510.17237.1|Name=mRNA_M-pyrifera_M_contig72510.17237.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
QALQNSNDERAAVTLDGSVDVEKWTEKPLWRVVLCPGSDESSIGVIVAMN
HVLADGTTGSFLVRELLRAMSGEEFEAGEVPLAPAVEDVVDMRPTVGILA
GLLIADKLPWLVACTKAVTDFFSPPPPPLLGP
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mRNA from alignment at M-pyrifera_M_contig72510:104..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72510.17237.1 ID=mRNA_M-pyrifera_M_contig72510.17237.1|Name=mRNA_M-pyrifera_M_contig72510.17237.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=396bp|location=Sequence derived from alignment at M-pyrifera_M_contig72510:104..499- (Macrocystis pyrifera P11B4 male)
CAAGCCTTGCAAAACTCAAATGATGAACGTGCTGCAGTGACGCTTGATGG
GAGTGTGGATGTGGAGAAATGGACGGAAAAACCGCTGTGGAGAGTTGTGC
TTTGTCCTGGGAGTGACGAAAGCTCGATTGGAGTTATTGTTGCCATGAAT
CACGTGCTTGCAGATGGCACTACTGGGAGCTTTCTAGTCCGAGAATTACT
ACGTGCAATGTCTGGGGAGGAATTTGAAGCTGGAGAAGTACCACTTGCTC
CTGCAGTGGAAGATGTTGTTGATATGCGTCCAACTGTTGGAATTTTGGCT
GGATTGCTCATCGCAGATAAACTCCCTTGGTTGGTTGCTTGCACCAAGGC
AGTGACCGATTTCTTCTCTCCTCCTCCACCACCTCTTTTGGGGCCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72510:104..499-

>mRNA_M-pyrifera_M_contig72510.17237.1 ID=mRNA_M-pyrifera_M_contig72510.17237.1|Name=mRNA_M-pyrifera_M_contig72510.17237.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig72510:104..499- (Macrocystis pyrifera P11B4 male)
CAAGCCTTGCAAAACTCAAATGATGAACGTGCTGCAGTGACGCTTGATGG
GAGTGTGGATGTGGAGAAATGGACGGAAAAACCGCTGTGGAGAGTTGTGC
TTTGTCCTGGGAGTGACGAAAGCTCGATTGGAGTTATTGTTGCCATGAAT
CACGTGCTTGCAGATGGCACTACTGGGAGCTTTCTAGTCCGAGAATTACT
ACGTGCAATGTCTGGGGAGGAATTTGAAGCTGGAGAAGTACCACTTGCTC
CTGCAGTGGAAGATGTTGTTGATATGCGTCCAACTGTTGGAATTTTGGCT
GGATTGCTCATCGCAGATAAACTCCCTTGGTTGGTTGCTTGCACCAAGGC
AGTGACCGATTTCTTCTCTCCTCCTCCACCACCTCTTTTGGGGCCACAAG
CCTTGCAAAACTCAAATGATGAACGTGCTGCAGTGACGCTTGATGGGAGT
GTGGATGTGGAGAAATGGACGGAAAAACCGCTGTGGAGAGTTGTGCTTTG
TCCTGGGAGTGACGAAAGCTCGATTGGAGTTATTGTTGCCATGAATCACG
TGCTTGCAGATGGCACTACTGGGAGCTTTCTAGTCCGAGAATTACTACGT
GCAATGTCTGGGGAGGAATTTGAAGCTGGAGAAGTACCACTTGCTCCTGC
AGTGGAAGATGTTGTTGATATGCGTCCAACTGTTGGAATTTTGGCTGGAT
TGCTCATCGCAGATAAACTCCCTTGGTTGGTTGCTTGCACCAAGGCAGTG
ACCGATTTCTTCTCTCCTCCTCCACCACCTCTTTTGGGGCCA
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