mRNA_M-pyrifera_M_contig72507.17236.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72507.17236.1
Unique NamemRNA_M-pyrifera_M_contig72507.17236.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Match: A0A0D2URE5_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2URE5_CAPO3)

HSP 1 Score: 124 bits (311), Expect = 1.100e-28
Identity = 81/255 (31.76%), Postives = 136/255 (53.33%), Query Frame = 1
Query:    1 FIIRYPVEMSKIKSASSITLEEESPVVVMISNVSNRAVGVASTSGRVL--RLRVEVDTSAALVRSSTHGLASASASNKYK-----EARKVTRDDLILRDENGTVVAAGQDFTKDVRLLGGGEDVFVRCTVAFRD-SVPAYSVARLQFSLELGSIDTPSSLVPVQIRTVSVQLAESYQHEDAN-VLLVANNKTTADEIAAWKEVAATYGLRLAVFNLSLYGGFSMRHPWSSGSSRCLLDDFANDGLVIFLNNTCRD 738
            F +R+P+E+S +  A +I    E+P+ + + N+S + +G+ S + R++   LR+ V     L       L +      Y      +       D++LRD+NG  +     FT+++  L  G+  ++  TVAF +   P Y+   +Q +L  G +     L  +  R  S+QL E+Y   D+N +LLV NN + A+E+ AW  +A TYG+RLA +N+SLY G ++RH   SG+S  L  DF+   +++ LNN C +
Sbjct:  428 FRVRFPLELSAVVGAEAIIPGAEAPIALRVKNISLKPMGLNSETRRLILAHLRLLVTKDVFLTADGVLVLTNPPNPEDYALSGLPDTLPFPEGDIVLRDKNGNRMTLLGGFTQEIAELMPGQVCYIAGTVAFGNPDTPMYTKVHMQATLGEGRLLAADQLQLIHQRPWSIQLCEAYNRSDSNDILLVVNNLSKAEEVTAWDNIARTYGIRLAKWNISLYTGLTLRHVKMSGTS--LEQDFSGKTIIV-LNNPCME 679          
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Match: A0A7W1A189_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7W1A189_9DELT)

HSP 1 Score: 115 bits (288), Expect = 1.190e-25
Identity = 76/241 (31.54%), Postives = 119/241 (49.38%), Query Frame = 1
Query:    1 FIIRYPVEMSKIKSASSITLEEESPVVVMISNVSNRAVGVASTSGRVLRLRVEVDTSAALVRSSTHGLASASASNKYKEARKVTRDDLILRDENGTVVAAGQDFTKDVRLLGGGEDVFVRCTVAFRDSVPAYSVARLQFSLELGSIDTPSSLVPVQIRTVSVQLAESYQHEDANVLLVANNKTTADEIAAWKEVAATYGLRLAVFNLSLYGGFSMRHPWSSGSSRCLLDDFANDGLVIFLN 723
            F+IRYPV +S I++  S+   E S V   ++N S  A+G  S   RV+R++V     + L                         D+ +L   +G  +  G  +T ++  +G G+   V  TV  +D  P Y       +LELG ID P+S+ P+QIR   V++A  +Q  DA+VLLV N++TT +EI AW ++      + A+++LS      +  P + G +  L D FAN  +VI  N
Sbjct:  423 FVIRYPVRISAIENLKSLAAGEASRVRFSVTNQSRFALGATSECKRVVRIKVATAPDSEL------------------------GDEHVLLIVDGRELLPGTGWTHELPAIGAGDTTQVELTVKVKDGAPEYLRFAAHVTLELGDIDAPASVRPIQIRLFDVRVARPFQVSDADVLLVVNHRTTREEIEAWDQLGDRLAFKSAIWDLSRERHLDLERPLNGGVA--LADWFANKAVVILDN 637          
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Match: A0A1M3NHH2_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium 68-20 TaxID=1895795 RepID=A0A1M3NHH2_9DELT)

HSP 1 Score: 97.1 bits (240), Expect = 2.810e-19
Identity = 68/241 (28.22%), Postives = 118/241 (48.96%), Query Frame = 1
Query:    4 IIRYPVEMSKIKSASSITLEEESPVVVMISNVSNRAVGVASTSGRVLRLRVEVDTSAALVRSSTHGLASASASNKYKEARKVTRDDLILRDENGTVVAAGQDFTKDVRLLGGGEDVFVRCTVAFRDSVPAYSVARLQFSLELGSIDTPSSLVPVQIRTVSVQLAESYQHEDANVLLVANNKTTADEIAAWKEVAATYGLRLAVFNLSLYGGFSMRHPWSSGSSRCLLDDFANDGLVIFLNN 726
            +IR+P+E+S+  +  S+   + + +   ++NVS +  G+AS  GR + +R+ +D    +     H LA +S   K+                    V+       DV  +G GED+    T+A       Y+ AR   S ELG I  P     V ++ + + +   +    A+VLLV NN+T ADE+AAW+E+  + GL ++V++ +L GG ++    ++G+      D+    LV+ LNN
Sbjct:  424 VIRFPIEVSEPTALFSLAPGQATRIRWQLTNVSGKPFGLASEQGRAVGVRLVLD-GGEIGADRIHLLAPSSPEEKH--------------------VSLEHGLDLDVPRVGAGEDISFEATIAVPSDAAPYTSARFVVSAELGHIAEPRRARAVHLQEIRISVGRPFDARGADVLLVVNNRTMADEVAAWEELVRSSGLTVSVWDAALEGGLAVLRNVAAGAH-----DYR---LVVVLNN 635          
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Match: A0A2P6NZH9_9EUKA (PH domain-containing protein (Fragment) n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NZH9_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 3.950e-19
Identity = 72/246 (29.27%), Postives = 119/246 (48.37%), Query Frame = 1
Query:    1 FIIRYPVEMSKIKSASSITLEEESPVVVMISNVSNRAVGVASTSG--RVLRLRVEVDTSAALVRSSTHGLASASASNKYKEARKVTRDDLILRDENG-TVVAAGQDFTKDVRLLGGGEDVFVRCTVAF-RDSVPAYSVARLQFSLELGSIDTPSSLVPVQIRTVSVQLAESYQHEDANVLLVANNKTTADEIAAWKEVAATYGLRLAVFNLSLYGGFSMRHPWSSGSSRCLLDDFANDGLVIFLNN 726
            F I+Y    S    A+SI+ +EESP+V    N+S   +G+    G  R++   +E+D                   N      K+   D+ LRD  G T V        D+ LL   + ++   T+ F  D +  Y+   +  SL LG +      + VQIR   +QLAE Y   +++ LLV NN+T  +E+AAW+++    G +++V+N++LYG  ++ H    G    L+D++     +I+LNN
Sbjct:  328 FTIQYAAHNSLFFGATSISRKEESPLVFASINISALDLGLNPRYGPSRIVYTTMEIDL------------------NTKGGTLKIDPSDVRLRDHRGNTFVDPKLGLRADLPLLPSNDQLYFSSTMQFVNDKIKPYTRLTVHSSLFLGHVLDMQRPIKVQIRPFEIQLAEEYDSCNSDFLLVVNNRTEYNEVAAWEKIIGAIGAKVSVWNVNLYGDLALTHLRKDGQR--LIDEYRFKN-IIYLNN 552          
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Match: A0A7C5J1S3_9DELT (Uncharacterized protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A7C5J1S3_9DELT)

HSP 1 Score: 94.4 bits (233), Expect = 2.270e-18
Identity = 63/243 (25.93%), Postives = 117/243 (48.15%), Query Frame = 1
Query:    1 FIIRYPVEMSKIKSASSITLEEESPVVVMISNVSNRAVGVASTSGRVLRLRVEVDTSAALVRSSTHGLASASASNKYKEARKVTRDDLILRDENGTVVAAGQDFTKDVRLLGGGEDVFVRCTVAFRDSVPAYSVARLQFSLELGSIDTPSSLVPVQIRTVSVQLAESYQHEDA-NVLLVANNKTTADEIAAWKEVAATYGLRLAVFNLSLYGGFSMRHPWSSGSSRCLLDDFANDGLVIFLNN 726
            F+I +P+E + + S  ++   E + +   ++N     +G+A+   R +R  +                  A+  ++  +A        +L D +G  V     +T ++  +  G+       + F    P Y    L  ++E+G ++ P+ L PVQ R    ++A  Y+ + A +VL+V N++TT DE+ AW+ +    GL++A+++LSL GG  +  P S G S  LLD F    +++ LNN
Sbjct:  235 FVIAFPIEATPLDSLRALAPGEAAHLRFALTNTGKLPLGIATEGARRVRFTL------------------AAHHSELGDAHA------MLLDGDGRRVPLEDGWTVELDAIEPGQTQRFEACIGFTRDAPLYRSLTLWLTVEVGYLERPAELRPVQFRAFEARVASRYRRDPAADVLVVVNHRTTRDELDAWRSLLEELGLKMAIWDLSLQGGIDLEEPLSDGES--LLDHFGGASMIV-LNN 450          
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Match: A0A0D2VQA3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VQA3_CAPO3)

HSP 1 Score: 93.6 bits (231), Expect = 4.660e-18
Identity = 63/162 (38.89%), Postives = 89/162 (54.94%), Query Frame = 1
Query:  256 DDLILRDENGTVVAAGQDFTKDVRLLGGGEDVFVRCTVAFRDS-VPAYSVARLQFSLELGSIDTPSSLVPVQIRTVSVQLAESYQHE-DANVLLVANNKTTADEIAAWKEVAATYGLRLAVFNLSLYGGFSMRHPWSSGSSRCLLDDFANDGLVIFLNNTCR 735
            + +I RD+NG  +   +  T  +  L  G    +  T AF  + VP Y+ A LQ SL LG +  P+ L  +Q R   VQL E+Y+    A+VLLV N+ TT DEIAAW+ VA   GL +  +N+S YGG S+R     G+S  L  D  +  +++ LNN  R
Sbjct:  727 EQVIFRDKNGFPLDLQEGLTAMLETLPAGSSRILSGTFAFASNEVPLYTHAVLQASLALGKLRDPAQLQLIQQRLHLVQLCETYERNWSADVLLVLNSLTTTDEIAAWERVARRLGLVVNRWNVSFYGGLSLRDLKPDGTS--LARDLKHKSIIL-LNNAFR 885          
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Match: A0A0K1Q239_9DELT (PE_PGRS n=2 Tax=Labilithrix luteola TaxID=1391654 RepID=A0A0K1Q239_9DELT)

HSP 1 Score: 93.2 bits (230), Expect = 5.750e-18
Identity = 64/237 (27.00%), Postives = 113/237 (47.68%), Query Frame = 1
Query:    7 IRYPVEMSKIKSASSITLEEESPVVVMISNVSNRAVGVASTSGRVLRLRVEVDTSAALVRSSTHGLASASASNKYKEARKVTRDDLILRDENGTVVAAGQDFTKDVRLLGGGEDVFVRCTVAFRDSVPAYSVARLQFSLELGSIDTPSSLVPVQIRTVSVQLAESYQHEDANVLLVANNKTTADEIAAWKEVAATYGLRLAVFNLSLYGGFSMRHPWSSGSSR----CLLDDFANDG 705
            +R+P+E++ + S  S+   E + +   + NVS RAVG  +   R + + + +                            +  + + L DE GT V   + F + V  +          TVA  +  P ++ ARL  +++LG  D P+ L P+Q +   V++ E+ +   A+VL+VANN++   EI AW+EV A++GL  AVF++S  G   +    ++G  +     LLD+  + G
Sbjct:  287 VRFPLEITPLTSLFSLAPGEAARLQWNVMNVSERAVGFETDEPRAVSVNIVM------------------------AGGDLQPNQIHLFDERGTHVPLDRGFARSVARIDAKHGNPFELTVAVSEDAPPHASARLVLAVQLGHFDAPNKLRPIQFQEFVVRVGEATEARQADVLVVANNRSDKTEIEAWREVIASFGLSSAVFDVSHVGNLEILRDVANGERKFRMVVLLDNSMDTG 499          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72507.17236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A0D2URE5_CAPO31.100e-2831.76Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A7W1A189_9DELT1.190e-2531.54Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]
A0A1M3NHH2_9DELT2.810e-1928.22Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A2P6NZH9_9EUKA3.950e-1929.27PH domain-containing protein (Fragment) n=1 Tax=Pl... [more]
A0A7C5J1S3_9DELT2.270e-1825.93Uncharacterized protein n=1 Tax=Polyangiaceae bact... [more]
A0A0D2VQA3_CAPO34.660e-1838.89Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A0K1Q239_9DELT5.750e-1827.00PE_PGRS n=2 Tax=Labilithrix luteola TaxID=1391654 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72507contigM-pyrifera_M_contig72507:1..738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog44689.DDB0168965
KEGG koko:K11647,ko:K16617,ko:K19721
KEGG Pathwayko04714,ko04974,ko05225,map04714,map04974,map05225
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs3XGPZ@554915,KOG3544@1,KOG3544@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko03021,ko03036
Exons1
Model size738
Cds size714
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.842901-UTR-M-pyrifera_M_contig72507:0..241622816621.842901-UTR-M-pyrifera_M_contig72507:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72507 1..24 +
1692278082.266607-UTR-M-pyrifera_M_contig72507:0..241692278082.266607-UTR-M-pyrifera_M_contig72507:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72507 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.8569827-CDS-M-pyrifera_M_contig72507:24..7381622816621.8569827-CDS-M-pyrifera_M_contig72507:24..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72507 25..738 +
1692278082.2782853-CDS-M-pyrifera_M_contig72507:24..7381692278082.2782853-CDS-M-pyrifera_M_contig72507:24..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72507 25..738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72507.17236.1prot_M-pyrifera_M_contig72507.17236.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72507 25..738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72507.17236.1

>prot_M-pyrifera_M_contig72507.17236.1 ID=prot_M-pyrifera_M_contig72507.17236.1|Name=mRNA_M-pyrifera_M_contig72507.17236.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=238bp
MSKIKSASSITLEEESPVVVMISNVSNRAVGVASTSGRVLRLRVEVDTSA
ALVRSSTHGLASASASNKYKEARKVTRDDLILRDENGTVVAAGQDFTKDV
RLLGGGEDVFVRCTVAFRDSVPAYSVARLQFSLELGSIDTPSSLVPVQIR
TVSVQLAESYQHEDANVLLVANNKTTADEIAAWKEVAATYGLRLAVFNLS
LYGGFSMRHPWSSGSSRCLLDDFANDGLVIFLNNTCRD
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mRNA from alignment at M-pyrifera_M_contig72507:1..738+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72507.17236.1 ID=mRNA_M-pyrifera_M_contig72507.17236.1|Name=mRNA_M-pyrifera_M_contig72507.17236.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig72507:1..738+ (Macrocystis pyrifera P11B4 male)
TTCATCATTCGCTACCCAGTGGAGATGAGCAAGATCAAGTCTGCGAGCAG TATCACTTTAGAGGAGGAGTCTCCAGTGGTTGTCATGATATCCAACGTCT CGAACAGAGCTGTGGGCGTGGCATCGACCTCTGGCAGAGTCCTCCGCCTG AGGGTGGAGGTGGATACCAGCGCTGCGCTGGTGAGGAGCTCCACGCATGG CCTGGCGTCAGCCTCAGCAAGCAACAAGTACAAGGAAGCGAGGAAGGTGA CTCGCGACGACCTCATTCTCAGGGACGAGAACGGAACTGTTGTGGCGGCG GGGCAGGACTTCACCAAGGACGTCCGCCTCCTTGGAGGAGGCGAAGACGT TTTTGTCCGTTGTACGGTCGCTTTCCGGGACTCTGTGCCAGCCTACAGCG TTGCTCGTCTGCAGTTTTCTTTGGAGCTGGGCAGCATTGACACTCCCTCT TCGTTAGTCCCCGTTCAGATCCGCACCGTCTCTGTTCAACTCGCCGAGAG CTACCAACATGAAGATGCCAACGTGCTGCTGGTGGCCAACAACAAGACCA CTGCAGACGAGATTGCAGCTTGGAAGGAGGTGGCGGCCACCTACGGCTTG CGCCTGGCCGTCTTCAACTTGTCTCTCTACGGTGGTTTCTCAATGCGCCA CCCTTGGTCGTCAGGCAGCAGCCGTTGCCTCTTGGATGACTTTGCCAACG ACGGCCTCGTGATCTTCCTCAACAATACCTGCAGAGAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72507:1..738+

>mRNA_M-pyrifera_M_contig72507.17236.1 ID=mRNA_M-pyrifera_M_contig72507.17236.1|Name=mRNA_M-pyrifera_M_contig72507.17236.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1428bp|location=Sequence derived from alignment at M-pyrifera_M_contig72507:1..738+ (Macrocystis pyrifera P11B4 male)
ATGAGCAAGATCAAGTCTGCGAGCAGTATCACTTTAGAGGAGGAGTCTCC
AGTGGTTGTCATGATATCCAACGTCTCGAACAGAGCTGTGGGCGTGGCAT
CGACCTCTGGCAGAGTCCTCCGCCTGAGGGTGGAGGTGGATACCAGCGCT
GCGCTGGTGAGGAGCTCCACGCATGGCCTGGCGTCAGCCTCAGCAAGCAA
CAAGTACAAGGAAGCGAGGAAGGTGACTCGCGACGACCTCATTCTCAGGG
ACGAGAACGGAACTGTTGTGGCGGCGGGGCAGGACTTCACCAAGGACGTC
CGCCTCCTTGGAGGAGGCGAAGACGTTTTTGTCCGTTGTACGGTCGCTTT
CCGGGACTCTGTGCCAGCCTACAGCGTTGCTCGTCTGCAGTTTTCTTTGG
AGCTGGGCAGCATTGACACTCCCTCTTCGTTAGTCCCCGTTCAGATCCGC
ACCGTCTCTGTTCAACTCGCCGAGAGCTACCAACATGAAGATGCCAACGT
GCTGCTGGTGGCCAACAACAAGACCACTGCAGACGAGATTGCAGCTTGGA
AGGAGGTGGCGGCCACCTACGGCTTGCGCCTGGCCGTCTTCAACTTGTCT
CTCTACGGTGGTTTCTCAATGCGCCACCCTTGGTCGTCAGGCAGCAGCCG
TTGCCTCTTGGATGACTTTGCCAACGACGGCCTCGTGATCTTCCTCAACA
ATACCTGCAGAGATATGAGCAAGATCAAGTCTGCGAGCAGTATCACTTTA
GAGGAGGAGTCTCCAGTGGTTGTCATGATATCCAACGTCTCGAACAGAGC
TGTGGGCGTGGCATCGACCTCTGGCAGAGTCCTCCGCCTGAGGGTGGAGG
TGGATACCAGCGCTGCGCTGGTGAGGAGCTCCACGCATGGCCTGGCGTCA
GCCTCAGCAAGCAACAAGTACAAGGAAGCGAGGAAGGTGACTCGCGACGA
CCTCATTCTCAGGGACGAGAACGGAACTGTTGTGGCGGCGGGGCAGGACT
TCACCAAGGACGTCCGCCTCCTTGGAGGAGGCGAAGACGTTTTTGTCCGT
TGTACGGTCGCTTTCCGGGACTCTGTGCCAGCCTACAGCGTTGCTCGTCT
GCAGTTTTCTTTGGAGCTGGGCAGCATTGACACTCCCTCTTCGTTAGTCC
CCGTTCAGATCCGCACCGTCTCTGTTCAACTCGCCGAGAGCTACCAACAT
GAAGATGCCAACGTGCTGCTGGTGGCCAACAACAAGACCACTGCAGACGA
GATTGCAGCTTGGAAGGAGGTGGCGGCCACCTACGGCTTGCGCCTGGCCG
TCTTCAACTTGTCTCTCTACGGTGGTTTCTCAATGCGCCACCCTTGGTCG
TCAGGCAGCAGCCGTTGCCTCTTGGATGACTTTGCCAACGACGGCCTCGT
GATCTTCCTCAACAATACCTGCAGAGAT
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