mRNA_M-pyrifera_M_contig72436.17223.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72436.17223.1
Unique NamemRNA_M-pyrifera_M_contig72436.17223.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A1S3JIG1_LINUN (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JIG1_LINUN)

HSP 1 Score: 52.4 bits (124), Expect = 2.130e-6
Identity = 27/59 (45.76%), Postives = 32/59 (54.24%), Query Frame = 1 
Query:    1 SERPRQLMERGIENRGNSCYANAVMQALLHCGPFYRLLTMLHGI-----RLPVCCPVTD 162
            S RP  L  RG+ NRGN CY NA +QAL+ C PFY LL  +        R P   P+ D
Sbjct:  509 SHRPAPLQPRGLVNRGNWCYINATLQALMACPPFYNLLKQMPAFFSARNRGPSSTPILD 567
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A5B0MI16_PUCGR (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Puccinia graminis f. sp. tritici TaxID=56615 RepID=A0A5B0MI16_PUCGR)

HSP 1 Score: 51.6 bits (122), Expect = 3.970e-6
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 SERPRQLMERGIENRGNSCYANAVMQALLHCGPFYRLLTMLHGI 132
            +++P  L+ RG+ N GN C+ANA++Q L+HC PF+ LL  +  I
Sbjct:  273 TDQPSYLIPRGLVNNGNICFANAILQVLVHCSPFFNLLNHIRRI 316
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A0L0W464_9BASI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Puccinia striiformis f. sp. tritici PST-78 TaxID=1165861 RepID=A0A0L0W464_9BASI)

HSP 1 Score: 51.2 bits (121), Expect = 5.430e-6
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 SERPRQLMERGIENRGNSCYANAVMQALLHCGPFYRLLTMLHGI 132
            +++P  L+ RG+ N GN C+ANA++Q L+HC PF+ LL  +  I
Sbjct:  252 TDQPSHLIPRGLVNNGNICFANAILQVLVHCSPFFNLLNHIGRI 295
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A0L6VD78_9BASI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VD78_9BASI)

HSP 1 Score: 50.8 bits (120), Expect = 7.420e-6
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 SERPRQLMERGIENRGNSCYANAVMQALLHCGPFYRLL 114
            +++P  L+ RG+ N GN C+ANA++Q L+HC PF+ LL
Sbjct:  248 TDKPTYLIPRGLVNNGNICFANAILQVLVHCSPFFNLL 285
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: UPI001B88C5C9 (ubiquitin carboxyl-terminal hydrolase 10-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88C5C9)

HSP 1 Score: 50.8 bits (120), Expect = 7.430e-6
Identity = 26/52 (50.00%), Postives = 30/52 (57.69%), Query Frame = 1 
Query:   19 LMERGIENRGNSCYANAVMQALLHCGPFYRLLTMLHGIRL----PVCCPVTD 162
            L  RG+ NRGN CY NA +QAL+ C PFY LL  L   RL    P   P+ D
Sbjct:  400 LQPRGLVNRGNWCYINATLQALVACPPFYHLLKKLSTARLLTRGPSSTPILD 451
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A2N5UIG6_9BASI (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5UIG6_9BASI)

HSP 1 Score: 50.4 bits (119), Expect = 1.020e-5
Identity = 19/38 (50.00%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    1 SERPRQLMERGIENRGNSCYANAVMQALLHCGPFYRLL 114
            +++P  L+ RG+ N GN C+ANA++Q L+HC PF+ LL
Sbjct:  247 TDQPSYLIPRGLVNNGNICFANAILQVLVHCSPFFNLL 284
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A443SNR0_9ACAR (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SNR0_9ACAR)

HSP 1 Score: 50.4 bits (119), Expect = 1.020e-5
Identity = 24/52 (46.15%), Postives = 31/52 (59.62%), Query Frame = 1 
Query:   19 LMERGIENRGNSCYANAVMQALLHCGPFYRLLTMLHGI----RLPVCCPVTD 162
            L+ RG  NRGN CY NA +QALL+C PFY L+  +  +    R   C P+ D
Sbjct:  481 LIPRGFVNRGNWCYINATLQALLYCPPFYNLMREIGEVSGICREKSCTPIID 532
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A4S4KA93_9APHY (USP domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4KA93_9APHY)

HSP 1 Score: 50.1 bits (118), Expect = 1.390e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   10 PRQLMERGIENRGNSCYANAVMQALLHCGPFYRLLTML 123
            P ++  RG+ N GN C+ANAV+Q L++C PFYRL T L
Sbjct:  368 PPKIRPRGLVNTGNMCFANAVLQVLVYCPPFYRLFTEL 405
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A2R6NMX7_9APHY (USP domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NMX7_9APHY)

HSP 1 Score: 50.1 bits (118), Expect = 1.390e-5
Identity = 21/38 (55.26%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   10 PRQLMERGIENRGNSCYANAVMQALLHCGPFYRLLTML 123
            P ++  RG+ N GN C+ANAV+Q L++C PFYRL T L
Sbjct:  482 PPKIRPRGLVNTGNMCFANAVLQVLVYCPPFYRLFTEL 519
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BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Match: A0A517KXB6_9PEZI (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Venturia effusa TaxID=50376 RepID=A0A517KXB6_9PEZI)

HSP 1 Score: 50.1 bits (118), Expect = 1.400e-5
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   19 LMERGIENRGNSCYANAVMQALLHCGPFYRLLTML 123
            L  RG+EN GN CY N+V+QAL+HC PFY  L ++
Sbjct:  461 LKPRGLENTGNMCYMNSVLQALVHCVPFYEFLEII 495
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72436.17223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3JIG1_LINUN2.130e-645.76Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Ling... [more]
A0A5B0MI16_PUCGR3.970e-645.45Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Pucc... [more]
A0A0L0W464_9BASI5.430e-645.45Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pucc... [more]
A0A0L6VD78_9BASI7.420e-650.00Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Pucc... [more]
UPI001B88C5C97.430e-650.00ubiquitin carboxyl-terminal hydrolase 10-like n=1 ... [more]
A0A2N5UIG6_9BASI1.020e-550.00Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Pucc... [more]
A0A443SNR0_9ACAR1.020e-546.15Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Lept... [more]
A0A4S4KA93_9APHY1.390e-555.26USP domain-containing protein n=1 Tax=Hermanssonia... [more]
A0A2R6NMX7_9APHY1.390e-555.26USP domain-containing protein n=1 Tax=Hermanssonia... [more]
A0A517KXB6_9PEZI1.400e-557.14Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Vent... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72436contigM-pyrifera_M_contig72436:405..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.2171838-UTR-M-pyrifera_M_contig72436:404..4251622816621.2171838-UTR-M-pyrifera_M_contig72436:404..425Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72436 405..425 +
1692278081.8935027-UTR-M-pyrifera_M_contig72436:404..4251692278081.8935027-UTR-M-pyrifera_M_contig72436:404..425Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig72436 405..425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.2292325-CDS-M-pyrifera_M_contig72436:425..5751622816621.2292325-CDS-M-pyrifera_M_contig72436:425..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72436 426..575 +
1692278081.9084222-CDS-M-pyrifera_M_contig72436:425..5751692278081.9084222-CDS-M-pyrifera_M_contig72436:425..575Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72436 426..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72436.17223.1prot_M-pyrifera_M_contig72436.17223.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72436 426..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72436.17223.1

>prot_M-pyrifera_M_contig72436.17223.1 ID=prot_M-pyrifera_M_contig72436.17223.1|Name=mRNA_M-pyrifera_M_contig72436.17223.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=50bp
MERGIENRGNSCYANAVMQALLHCGPFYRLLTMLHGIRLPVCCPVTDRL*
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mRNA from alignment at M-pyrifera_M_contig72436:405..575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72436.17223.1 ID=mRNA_M-pyrifera_M_contig72436.17223.1|Name=mRNA_M-pyrifera_M_contig72436.17223.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig72436:405..575+ (Macrocystis pyrifera P11B4 male)
AGTGAACGGCCTCGCCAGCTGATGGAGAGGGGCATCGAGAACAGGGGCAA
TTCCTGCTATGCCAACGCAGTGATGCAAGCACTGCTGCATTGTGGGCCCT
TCTACCGTCTCTTGACAATGCTCCACGGCATTCGTCTCCCTGTCTGCTGC
CCTGTCACCGATCGTTTGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72436:405..575+

>mRNA_M-pyrifera_M_contig72436.17223.1 ID=mRNA_M-pyrifera_M_contig72436.17223.1|Name=mRNA_M-pyrifera_M_contig72436.17223.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig72436:405..575+ (Macrocystis pyrifera P11B4 male)
ATGGAGAGGGGCATCGAGAACAGGGGCAATTCCTGCTATGCCAACGCAGT
GATGCAAGCACTGCTGCATTGTGGGCCCTTCTACCGTCTCTTGACAATGC
TCCACGGCATTCGTCTCCCTGTCTGCTGCCCTGTCACCGATCGTTTGTGA
ATGGAGAGGGGCATCGAGAACAGGGGCAATTCCTGCTATGCCAACGCAGT
GATGCAAGCACTGCTGCATTGTGGGCCCTTCTACCGTCTCTTGACAATGC
TCCACGGCATTCGTCTCCCTGTCTGCTGCCCTGTCACCGATCGTTTGTGA
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