mRNA_M-pyrifera_M_contig72432.17221.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72432.17221.1
Unique NamemRNA_M-pyrifera_M_contig72432.17221.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: A0A355SSZ5_9GAMM (Uncharacterized protein (Fragment) n=7 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A355SSZ5_9GAMM)

HSP 1 Score: 508 bits (1308), Expect = 2.060e-169
Identity = 269/290 (92.76%), Postives = 274/290 (94.48%), Query Frame = 1
Query:   61 VQSLALRLVALLLVLSRQAVRFLSTLALCLAVFCPVAVNAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSADQELRPST 930
            +Q LALR  ALLLVLSRQAVR LS LALC A  C VAV+AAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNF+EDGE LGFSVDIMRLVAQRL VELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTL SSLRVAVPRGFFTERLLPE HPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPD DLTRLRFAVRKDQVILD+LLRKALDTVSRHERAEILGRWL+ DQEL PST
Sbjct:    1 MQRLALRFAALLLVLSRQAVRILSPLALCFAGCCSVAVSAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFYEDGETLGFSVDIMRLVAQRLGVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLESSLRVAVPRGFFTERLLPELHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDADLTRLRFAVRKDQVILDQLLRKALDTVSRHERAEILGRWLAVDQELSPST 290          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: A0A2D4TBN7_9GAMM (Uncharacterized protein (Fragment) n=2 Tax=Haliea TaxID=475794 RepID=A0A2D4TBN7_9GAMM)

HSP 1 Score: 514 bits (1323), Expect = 6.660e-168
Identity = 271/290 (93.45%), Postives = 276/290 (95.17%), Query Frame = 1
Query:   61 VQSLALRLVALLLVLSRQAVRFLSTLALCLAVFCPVAVNAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSADQELRPST 930
            +Q LALR  ALLLVLSRQAVR LS LALC A FC VAV+AAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNF+EDGE LGFSVDIMRLVAQRL VELEFVGPEHWPELEDRLLNGSVDVLLNTVRTP REQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPE HPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPD DLTRLRFAVRKDQVILD+LLRKALDTVSRHERAEILGRWL+ADQEL PST
Sbjct:    1 MQRLALRFAALLLVLSRQAVRILSPLALCFAGFCSVAVSAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFYEDGETLGFSVDIMRLVAQRLGVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPEREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPELHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDADLTRLRFAVRKDQVILDQLLRKALDTVSRHERAEILGRWLAADQELSPST 290          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: UPI000F0B546E (PAS domain S-box protein n=1 Tax=Haliea alexandrii TaxID=2448162 RepID=UPI000F0B546E)

HSP 1 Score: 465 bits (1197), Expect = 5.380e-147
Identity = 245/289 (84.78%), Postives = 257/289 (88.93%), Query Frame = 1
Query:   61 VQSLALRLVALLLVLSRQAVRFLSTLALCLAVFCPVAVNAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSADQELRPS 927
            +Q L LRL ALL VLSR AVR LS L LC A FC VAV+AAVSDQLTLTAEE+AW QAHPVLRVGSEVDWAPYNFHE G+P GFSVD++RLVAQRL VELEF+GPEHWPELEDRLLNGS+DVLLNTVRTP REQSMLFSPPYG+APVGIAS L+APVTSL   S LRVAVPRGFFTERLLPE HPDIELVIAEGTV SLMAVALGEADATVG YP LR QI ANLLGQLAITGDYRLPDPDLTRLR AVRKDQV+LD LLRKALDTVSRHERAEILGRW  +DQ LRPS
Sbjct:    1 MQPLFLRLAALLPVLSRPAVRILSPLVLCFAGFCSVAVSAAVSDQLTLTAEEKAWLQAHPVLRVGSEVDWAPYNFHEGGKPQGFSVDVIRLVAQRLGVELEFIGPEHWPELEDRLLNGSIDVLLNTVRTPGREQSMLFSPPYGSAPVGIASHLDAPVTSLPPESRLRVAVPRGFFTERLLPELHPDIELVIAEGTVESLMAVALGEADATVGVYPVLRQQITANLLGQLAITGDYRLPDPDLTRLRLAVRKDQVVLDLLLRKALDTVSRHERAEILGRWQVSDQALRPS 289          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: UPI00041D01AA (PAS domain S-box protein n=1 Tax=Haliea salexigens TaxID=287487 RepID=UPI00041D01AA)

HSP 1 Score: 453 bits (1166), Expect = 1.030e-142
Identity = 238/289 (82.35%), Postives = 253/289 (87.54%), Query Frame = 1
Query:   61 VQSLALRLVALLLVLSRQAVRFLSTLALCLAVFCPVAVNAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSADQELRPS 927
            +Q+  LRL ALL VLSRQA+R LS LALCLA  C  AV+AA SDQLTLTAEEEAW QAHPVLRVGSEVDWAPYNF+EDG P GFSVD++R VAQRL VELEFVGPEHW ELEDRLLNGS+DVLLNTVRTP REQSMLFSPPYG+APVGIAS L+APVTSL  GS+LRVAVPRGFFTE LLPE HPDIELVIA+GTV SLMAVALGEADATVG YP L  QI ANLLG+LAITGDYRLPDPDLTRLR AVRKDQV LD LLRKALDT+SRHERAEILGRW   DQ LRP+
Sbjct:    1 MQARVLRLAALLPVLSRQAIRILSLLALCLAGACSGAVSAAASDQLTLTAEEEAWLQAHPVLRVGSEVDWAPYNFYEDGRPQGFSVDVIRRVAQRLGVELEFVGPEHWSELEDRLLNGSIDVLLNTVRTPGREQSMLFSPPYGSAPVGIASHLDAPVTSLPPGSTLRVAVPRGFFTESLLPELHPDIELVIADGTVESLMAVALGEADATVGVYPVLHQQITANLLGRLAITGDYRLPDPDLTRLRLAVRKDQVALDRLLRKALDTISRHERAEILGRWQVTDQTLRPA 289          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: A0A2E3P3Q2_9PROT (Histidine kinase n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E3P3Q2_9PROT)

HSP 1 Score: 364 bits (934), Expect = 3.610e-111
Identity = 179/256 (69.92%), Postives = 211/256 (82.42%), Query Frame = 1
Query:  160 CPVAVNAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSADQELRPS 927
            C   ++A    QLTLTAEE  W   HPVLRVG+EVDWAPYNFHEDG+PLG+S+D+MR++A RL V++EFVGPEHWPELE RL++G +D+LLNTVRTP+R+ SMLF+ PYG A VGIASRL+ PVTSL     LRVAVPRGFFTE+LLP  HP IELV+ EGTVASLMAVA+G ADATVGAYPALRHQI++NLLGQL +TGDYRLP+PDL RLR AVRKDQ +L  LL KALDT S  +RA++L RWL A+Q L+ S
Sbjct:   21 CAPLLHAEPHAQLTLTAEERQWLDTHPVLRVGNEVDWAPYNFHEDGKPLGYSIDVMRVLASRLGVQIEFVGPEHWPELEARLISGDIDILLNTVRTPSRDASMLFTQPYGTATVGIASRLDTPVTSLERAQGLRVAVPRGFFTEQLLPAAHPGIELVLTEGTVASLMAVAVGNADATVGAYPALRHQIKSNLLGQLGVTGDYRLPEPDLARLRIAVRKDQPLLHGLLLKALDTFSPRQRADLLERWLDAEQALQVS 276          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: UPI001908AAF7 (PAS domain S-box protein n=1 Tax=Thiocystis violacea TaxID=13725 RepID=UPI001908AAF7)

HSP 1 Score: 191 bits (486), Expect = 3.880e-51
Identity = 98/236 (41.53%), Postives = 142/236 (60.17%), Query Frame = 1
Query:  193 QLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWL 900
            ++ LTA E AW + HPV+R  +E DW P+NF + GEP GFS+D M L+A +L +E+ +     W    D++ +  +D++LN V+TP RE+ +LF+ PY   P  I SR +AP+ SL        A PRGFF E +L   +P IE ++   T+ASL AVA G+ADA +G    LR+QI  +LL  L +TG++ + +PDL  +R  VR D  +L   L KA+  V   E  ++  RWL
Sbjct:   48 EIHLTAHERAWLKQHPVIRAHNEQDWPPFNFRDQGEPRGFSIDYMNLLADKLGIEIHYQSGPDWNAFLDQIRDKRLDLMLNIVKTPERERFLLFTEPYATTPNVIVSRRDAPIASLAELDGRAAAFPRGFFQEEILARDYPGIERLVVTDTLASLKAVAFGKADAALGKDAVLRYQIGKHLLTNLRVTGEFDIGNPDLGNMRIGVRDDWPLLHAALGKAMAQVRPQELNDLRQRWL 283          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: A0A1S7LMQ1_MAGMO (Histidine kinase n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LMQ1_MAGMO)

HSP 1 Score: 184 bits (467), Expect = 1.290e-48
Identity = 93/253 (36.76%), Postives = 155/253 (61.26%), Query Frame = 1
Query:  172 VNAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSADQELRPST 930
            ++ A + +  LT +E+AW + +P +RV +E DWAP+NF E+G+P G S+D M L+AQ++ +++E++    W E  + +  G +DV+LN V+T  R++ +L++PPY   P  I SR +AP  +L       ++VP+GFF E +L   +P I+++    T+ S+ AV+ G+ADA +G      + +  ++L  +A+TG+ ++ D  L+ L  A RKDQ +L  +LRK L  +SR E   I  RWL +  +  PST
Sbjct:   24 ISWARAPEAVLTPQEQAWIKQNPTIRVHNETDWAPFNFAEEGQPKGLSIDTMNLLAQKVGLQVEYITGPTWSEFLEMMKQGQLDVMLNIVKTEDRQKYLLYTPPYVDNPNTILSRKSAPYHTLEQLEGKTISVPKGFFYEEILSRDYPRIKILPVRNTIDSIKAVSFGKADAALGELAVFNYLMTHHMLSDVAVTGEVKVGDHTLSLLNIATRKDQPLLASILRKGLKAISREESQAIKQRWLGSTAQ--PST 274          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: I3Y8B1_THIV6 (Histidine kinase n=3 Tax=Thiocystis TaxID=13724 RepID=I3Y8B1_THIV6)

HSP 1 Score: 182 bits (463), Expect = 4.430e-48
Identity = 94/236 (39.83%), Postives = 141/236 (59.75%), Query Frame = 1
Query:  193 QLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWL 900
            ++ L+  E  W + HP +RV +E DW P+NFH  GEP GFS+D M L+A +L +++++     W +  +R+ +  +D++LN V+T  R Q +LF+ PY   P  I SRL+ P+ S+   +   VA+P+GFF E +L   +P I  +     +ASL AVALG+ADA +G    LR+QI+ NLL  L ITG+  + DPD+  +R  VR D  +L   L KA+  V+  E   +  RWL
Sbjct:   40 EIPLSEPEREWLRQHPRIRVHNEQDWPPFNFHASGEPRGFSIDYMNLLAGKLGLQVDYQSGPSWNQFLERIRDKELDLMLNIVQTEERRQYLLFTEPYATTPNVIVSRLDDPIQSIAELAGRTVALPKGFFYEDVLTREYPTIRRLPVADALASLKAVALGQADAALGRDAVLRYQIKKNLLTNLKITGELTISDPDIAHMRIGVRNDWPLLRSALDKAMAAVAPEEIDALRQRWL 275          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: A0A421K7S2_9GAMM (GGDEF domain-containing protein n=1 Tax=gamma proteobacterium symbiont of Stewartia floridana TaxID=1968599 RepID=A0A421K7S2_9GAMM)

HSP 1 Score: 182 bits (462), Expect = 4.510e-48
Identity = 89/237 (37.55%), Postives = 145/237 (61.18%), Query Frame = 1
Query:  202 LTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSADQ 912
            LT EE  + +AHPV+RV +E++W P+N+ +DGEP GFS+D M LVA+R   E+E++    W E    +  G++DV+LN V+TP R++ +LF+ PY   P  I S+ + P  S+       VAVP+GFFTE +L + +P+I L+     + ++ AV  G+ADA +G      H +  +++  LAI+G+  + DP+ + L  A RKD  +L  +LRK + +++  E+ E+  +WL   +
Sbjct:  280 LTQEELEFIEAHPVIRVHNELNWPPFNYTQDGEPQGFSIDFMNLVAERTGFEVEYISGPSWNEFLQMMKKGTLDVMLNIVKTPERQKYLLFTHPYADNPNAILSKKDKPYESIESLIGKTVAVPKGFFTEEILSKNYPEIRLLPLNNMLETMKAVTFGKADAALGELAVFSHLLNEHMMSDLAISGEALMGDPEYSLLNIATRKDLPLLAAILRKGMKSITPGEKKELQLKWLGVSE 516          
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Match: UPI000A4E94A4 (transporter substrate-binding domain-containing protein n=1 Tax=Candidatus Terasakiella magnetica TaxID=1867952 RepID=UPI000A4E94A4)

HSP 1 Score: 182 bits (462), Expect = 5.420e-48
Identity = 86/242 (35.54%), Postives = 151/242 (62.40%), Query Frame = 1
Query:  181 AVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGEPLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTPAREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLLPERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLAITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWLSA 906
            A +  + L+ EE+ W   +PV++V +E DW P+N+ E+G PLGFS+D+M L+A+++ +++E+     W E  D +  G +DV+LN V+T  R++ +L++PPY   P  I SR +AP  SL       V+VP+GFF E +L   +P I++++ +GT+ ++ AV+ G+ADA +G      H +  +L+  +A++G+ ++ DP+L+ L  A RKD   L  +L+K +  ++  E+  I  +WL +
Sbjct:   28 AANHDIALSDEEKTWITKNPVIKVHNETDWPPFNYAENGNPLGFSIDVMNLIAEKVGLKVEYKTGPSWSEFLDMMRAGDLDVMLNIVKTADRQKYLLYTPPYADNPNTILSRTDAPFESLEQLFGKTVSVPKGFFYEEILKRDYPQIKVLLRDGTLETMKAVSFGQADAALGELAVFNHLLSKHLMTGVAVSGEVKMGDPELSLLNIATRKDLPTLASILKKGVQALTVEEKRSISIKWLQS 269          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72432.17221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A355SSZ5_9GAMM2.060e-16992.76Uncharacterized protein (Fragment) n=7 Tax=Halieac... [more]
A0A2D4TBN7_9GAMM6.660e-16893.45Uncharacterized protein (Fragment) n=2 Tax=Haliea ... [more]
UPI000F0B546E5.380e-14784.78PAS domain S-box protein n=1 Tax=Haliea alexandrii... [more]
UPI00041D01AA1.030e-14282.35PAS domain S-box protein n=1 Tax=Haliea salexigens... [more]
A0A2E3P3Q2_9PROT3.610e-11169.92Histidine kinase n=1 Tax=Magnetovibrio sp. TaxID=2... [more]
UPI001908AAF73.880e-5141.53PAS domain S-box protein n=1 Tax=Thiocystis violac... [more]
A0A1S7LMQ1_MAGMO1.290e-4836.76Histidine kinase n=1 Tax=Magnetococcus massalia (s... [more]
I3Y8B1_THIV64.430e-4839.83Histidine kinase n=3 Tax=Thiocystis TaxID=13724 Re... [more]
A0A421K7S2_9GAMM4.510e-4837.55GGDEF domain-containing protein n=1 Tax=gamma prot... [more]
UPI000A4E94A45.420e-4835.54transporter substrate-binding domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72432contigM-pyrifera_M_contig72432:197..1126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score458.4
Seed ortholog evalue2.7e-126
Seed eggNOG ortholog1121937.AUHJ01000004_gene1128
KEGG koko:K02030,ko:K19616
KEGG TC3.A.1.3
KEGG Pathwayko02020,map02020
KEGG ModuleM00236,M00771
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Bacterial periplasmic substrate-binding proteins
EggNOG OGs1NSQ1@1224,1T1YP@1236,46DDS@72275,COG0834@1,COG0834@2,COG4251@1,COG4251@2
EC2.7.13.3
COG Functional cat.T
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko02022
Exons1
Model size930
Cds size930
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816621.1241171-CDS-M-pyrifera_M_contig72432:196..11261622816621.1241171-CDS-M-pyrifera_M_contig72432:196..1126Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72432 197..1126 +
1692278081.857914-CDS-M-pyrifera_M_contig72432:196..11261692278081.857914-CDS-M-pyrifera_M_contig72432:196..1126Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72432 197..1126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72432.17221.1prot_M-pyrifera_M_contig72432.17221.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72432 197..1126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72432.17221.1

>prot_M-pyrifera_M_contig72432.17221.1 ID=prot_M-pyrifera_M_contig72432.17221.1|Name=mRNA_M-pyrifera_M_contig72432.17221.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=310bp
LCAAAIGKKVHSASWNRTVRVQSLALRLVALLLVLSRQAVRFLSTLALCL
AVFCPVAVNAAVSDQLTLTAEEEAWRQAHPVLRVGSEVDWAPYNFHEDGE
PLGFSVDIMRLVAQRLDVELEFVGPEHWPELEDRLLNGSVDVLLNTVRTP
AREQSMLFSPPYGAAPVGIASRLNAPVTSLTLGSSLRVAVPRGFFTERLL
PERHPDIELVIAEGTVASLMAVALGEADATVGAYPALRHQIRANLLGQLA
ITGDYRLPDPDLTRLRFAVRKDQVILDELLRKALDTVSRHERAEILGRWL
SADQELRPST
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mRNA from alignment at M-pyrifera_M_contig72432:197..1126+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72432.17221.1 ID=mRNA_M-pyrifera_M_contig72432.17221.1|Name=mRNA_M-pyrifera_M_contig72432.17221.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig72432:197..1126+ (Macrocystis pyrifera P11B4 male)
TTGTGCGCAGCCGCTATCGGGAAGAAGGTCCACTCCGCGAGTTGGAACCG GACAGTTAGGGTGCAATCACTCGCCCTGCGGTTAGTAGCATTGCTGCTCG TACTTTCCCGTCAGGCTGTTCGCTTTCTGTCGACTCTGGCGTTGTGTCTT GCGGTTTTTTGCCCGGTCGCAGTCAATGCGGCGGTCAGCGATCAGCTGAC CCTGACCGCAGAAGAAGAAGCCTGGCGGCAGGCGCACCCGGTACTCCGTG TGGGCAGCGAGGTTGACTGGGCACCCTACAACTTTCACGAAGACGGTGAA CCGCTCGGTTTCTCCGTTGATATCATGCGTCTGGTTGCGCAGCGTCTGGA TGTCGAGCTCGAATTTGTTGGTCCTGAGCACTGGCCGGAACTTGAAGACC GGCTGCTCAATGGCAGTGTCGATGTGTTGCTCAATACCGTGCGCACACCA GCGCGTGAGCAGTCGATGCTGTTTTCTCCCCCCTACGGCGCAGCGCCAGT GGGTATCGCCAGCCGCCTCAACGCTCCGGTAACCTCACTCACGTTGGGGA GCAGCCTGCGGGTTGCGGTGCCGCGCGGCTTTTTCACCGAGCGGCTGCTG CCTGAACGGCACCCGGATATCGAGCTGGTGATTGCCGAGGGCACGGTAGC GTCCCTGATGGCGGTAGCCCTCGGTGAGGCCGATGCGACGGTGGGGGCGT ATCCCGCCCTGCGCCACCAGATCCGGGCCAATTTGCTCGGCCAACTTGCG ATCACAGGCGATTATCGCCTGCCCGACCCGGATCTGACCCGGCTGCGGTT TGCCGTGCGCAAGGACCAGGTGATCCTCGACGAACTGCTGCGCAAGGCGC TGGATACCGTGTCCCGCCACGAGCGTGCCGAGATACTCGGACGATGGCTT TCAGCCGACCAGGAGCTGCGCCCCTCTACG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72432:197..1126+

>mRNA_M-pyrifera_M_contig72432.17221.1 ID=mRNA_M-pyrifera_M_contig72432.17221.1|Name=mRNA_M-pyrifera_M_contig72432.17221.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1860bp|location=Sequence derived from alignment at M-pyrifera_M_contig72432:197..1126+ (Macrocystis pyrifera P11B4 male)
TTGTGCGCAGCCGCTATCGGGAAGAAGGTCCACTCCGCGAGTTGGAACCG
GACAGTTAGGGTGCAATCACTCGCCCTGCGGTTAGTAGCATTGCTGCTCG
TACTTTCCCGTCAGGCTGTTCGCTTTCTGTCGACTCTGGCGTTGTGTCTT
GCGGTTTTTTGCCCGGTCGCAGTCAATGCGGCGGTCAGCGATCAGCTGAC
CCTGACCGCAGAAGAAGAAGCCTGGCGGCAGGCGCACCCGGTACTCCGTG
TGGGCAGCGAGGTTGACTGGGCACCCTACAACTTTCACGAAGACGGTGAA
CCGCTCGGTTTCTCCGTTGATATCATGCGTCTGGTTGCGCAGCGTCTGGA
TGTCGAGCTCGAATTTGTTGGTCCTGAGCACTGGCCGGAACTTGAAGACC
GGCTGCTCAATGGCAGTGTCGATGTGTTGCTCAATACCGTGCGCACACCA
GCGCGTGAGCAGTCGATGCTGTTTTCTCCCCCCTACGGCGCAGCGCCAGT
GGGTATCGCCAGCCGCCTCAACGCTCCGGTAACCTCACTCACGTTGGGGA
GCAGCCTGCGGGTTGCGGTGCCGCGCGGCTTTTTCACCGAGCGGCTGCTG
CCTGAACGGCACCCGGATATCGAGCTGGTGATTGCCGAGGGCACGGTAGC
GTCCCTGATGGCGGTAGCCCTCGGTGAGGCCGATGCGACGGTGGGGGCGT
ATCCCGCCCTGCGCCACCAGATCCGGGCCAATTTGCTCGGCCAACTTGCG
ATCACAGGCGATTATCGCCTGCCCGACCCGGATCTGACCCGGCTGCGGTT
TGCCGTGCGCAAGGACCAGGTGATCCTCGACGAACTGCTGCGCAAGGCGC
TGGATACCGTGTCCCGCCACGAGCGTGCCGAGATACTCGGACGATGGCTT
TCAGCCGACCAGGAGCTGCGCCCCTCTACGTTGTGCGCAGCCGCTATCGG
GAAGAAGGTCCACTCCGCGAGTTGGAACCGGACAGTTAGGGTGCAATCAC
TCGCCCTGCGGTTAGTAGCATTGCTGCTCGTACTTTCCCGTCAGGCTGTT
CGCTTTCTGTCGACTCTGGCGTTGTGTCTTGCGGTTTTTTGCCCGGTCGC
AGTCAATGCGGCGGTCAGCGATCAGCTGACCCTGACCGCAGAAGAAGAAG
CCTGGCGGCAGGCGCACCCGGTACTCCGTGTGGGCAGCGAGGTTGACTGG
GCACCCTACAACTTTCACGAAGACGGTGAACCGCTCGGTTTCTCCGTTGA
TATCATGCGTCTGGTTGCGCAGCGTCTGGATGTCGAGCTCGAATTTGTTG
GTCCTGAGCACTGGCCGGAACTTGAAGACCGGCTGCTCAATGGCAGTGTC
GATGTGTTGCTCAATACCGTGCGCACACCAGCGCGTGAGCAGTCGATGCT
GTTTTCTCCCCCCTACGGCGCAGCGCCAGTGGGTATCGCCAGCCGCCTCA
ACGCTCCGGTAACCTCACTCACGTTGGGGAGCAGCCTGCGGGTTGCGGTG
CCGCGCGGCTTTTTCACCGAGCGGCTGCTGCCTGAACGGCACCCGGATAT
CGAGCTGGTGATTGCCGAGGGCACGGTAGCGTCCCTGATGGCGGTAGCCC
TCGGTGAGGCCGATGCGACGGTGGGGGCGTATCCCGCCCTGCGCCACCAG
ATCCGGGCCAATTTGCTCGGCCAACTTGCGATCACAGGCGATTATCGCCT
GCCCGACCCGGATCTGACCCGGCTGCGGTTTGCCGTGCGCAAGGACCAGG
TGATCCTCGACGAACTGCTGCGCAAGGCGCTGGATACCGTGTCCCGCCAC
GAGCGTGCCGAGATACTCGGACGATGGCTTTCAGCCGACCAGGAGCTGCG
CCCCTCTACG
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