mRNA_M-pyrifera_M_contig7240.17216.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7240.17216.1
Unique NamemRNA_M-pyrifera_M_contig7240.17216.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7240.17216.1 vs. uniprot
Match: D8LQ97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ97_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 8.810e-96
Identity = 172/280 (61.43%), Postives = 197/280 (70.36%), Query Frame = 1 
Query:    1 MERDYYSADPKLVDPLXXXXXXXRALKIQGHSVFGLTSNALDLVHAPQILETLAKYKIRFSPPEVRGELPRSGALVMDHPICRGVIFIDNQQAIRHDKGEVIAEFVGLLLHNA----NEEIAAEDGGGRARR--LEPGKGVWTKFGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCVLVDNTSKKCEKALESFVRHAAAEF--LELHTLHFTEAENLVESPDAVNQLRRILGRLRARGLIGVDLVAEDILVSPGSSGRT----KTVVSAATSAEPNG 804
            MERDYY+ADPKLVDPL       RALKIQGHSVFGLTSNALD VHAP+ILETLAKYKIRFS P+VRGELPRSGAL++DHP+ RG+IF DNQQA+ HDKGE+IAE+VGLLLHNA    +E + A+  G  AR    EPG GV  K GDG                             KCVLVDNTSKKCE+A E+F RHAAA    LELHTLHFTEAEN+V+SP+A+ QLR IL RL+ RGLIGVDL+AEDILV+P    R     K   +AAT+  P+G
Sbjct:    1 MERDYYNADPKLVDPLLARVI--RALKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLHNARRAVSEHVGAKTAGDAARGGLSEPG-GV--KVGDG----------ESSGGRTALAGSLSPKRPRKCVLVDNTSKKCERAAETFARHAAAAGGGLELHTLHFTEAENMVDSPEALRQLRIILARLKERGLIGVDLIAEDILVTPVGGVRRGAGDKVKAAAATACVPDG 265
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BLAST of mRNA_M-pyrifera_M_contig7240.17216.1 vs. uniprot
Match: A0A6H5KKZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ7_9PHAE)

HSP 1 Score: 268 bits (684), Expect = 1.170e-84
Identity = 156/256 (60.94%), Postives = 180/256 (70.31%), Query Frame = 1 
Query:    1 MERDYYSADPKLVDPLXXXXXXXRALKIQGHSVFGLTSNALDLVHAPQILETLAKYKIRFSPPEVRGELPRSGALVMDHPICRGVIFIDNQQAIRHDKGEVIAEFVGLLLHNANEE----IAAEDGGGRARR--LEPGKGVWTKFGDGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCVLVDNTSKKCEKALESFVRHAAAEF--LELHTLHFTEAENLVESPDAVNQLRRILGRLRARGLIGVDLVAEDILVSP 744
            MERDYY+AD +LVDPL       R+LKIQGHSVFGLTSNALD VHAP+ILETLAKYKIRFS P+VRGELPRSGAL++DHP+ RG+IF DNQQA+ HDKGE+IAE+VGLLL          +  +  G  AR    EPG GV  K GDG                             KCVLVDNTSKKCE+A+E+F RHAA     LELHTLHFTEAEN+V+SP+A+ QLR IL RL+ RGLIGVDL+AEDILV+P
Sbjct:  128 MERDYYNADLRLVDPLLARVI--RSLKIQGHSVFGLTSNALDPVHAPRILETLAKYKIRFSAPDVRGELPRSGALMVDHPVSRGIIFGDNQQAVSHDKGEIIAEYVGLLLXXXXXXXXXXVGEKTAGDAARGGLSEPG-GV--KVGDG----------ESSGGRTALAGSLSPRRPRKCVLVDNTSKKCERAVETFARHAAMAGGGLELHTLHFTEAENMVDSPEALRQLRVILARLQERGLIGVDLIAEDILVTP 368
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BLAST of mRNA_M-pyrifera_M_contig7240.17216.1 vs. uniprot
Match: A0A835YVM2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVM2_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.040e-12
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 MERDYYSADPKLVDPLXXXXXXXRALKIQGHSVFGLTSNALDLVHAPQILETLAKYKIRFSPPEVRGELP 210
            MER+YY +D KLVDPL       R LK+QGH VFGLTSN     H+   +  LA+YKIRFS P +RGELP
Sbjct:  110 MEREYYDSDIKLVDPLLARLV--RGLKVQGHHVFGLTSNEPFSEHSITTVAALAQYKIRFSDPWIRGELP 177
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7240.17216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LQ97_ECTSI8.810e-9661.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKZ7_9PHAE1.170e-8460.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YVM2_9STRA2.040e-1257.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7240contigM-pyrifera_M_contig7240:9094..11308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_005620.1
Exons3
Model size834
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7240.17216.1prot_M-pyrifera_M_contig7240.17216.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7240 9094..11308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.6798337-CDS-M-pyrifera_M_contig7240:9093..91571622816620.6798337-CDS-M-pyrifera_M_contig7240:9093..9157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7240 9094..9157 +
1692278081.4882495-CDS-M-pyrifera_M_contig7240:9093..91571692278081.4882495-CDS-M-pyrifera_M_contig7240:9093..9157Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7240 9094..9157 +
1622816620.6953075-CDS-M-pyrifera_M_contig7240:9601..97131622816620.6953075-CDS-M-pyrifera_M_contig7240:9601..9713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7240 9602..9713 +
1692278081.5048811-CDS-M-pyrifera_M_contig7240:9601..97131692278081.5048811-CDS-M-pyrifera_M_contig7240:9601..9713Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7240 9602..9713 +
1622816620.7066958-CDS-M-pyrifera_M_contig7240:10650..113081622816620.7066958-CDS-M-pyrifera_M_contig7240:10650..11308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7240 10651..11308 +
1692278081.5143328-CDS-M-pyrifera_M_contig7240:10650..113081692278081.5143328-CDS-M-pyrifera_M_contig7240:10650..11308Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7240 10651..11308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7240.17216.1

>prot_M-pyrifera_M_contig7240.17216.1 ID=prot_M-pyrifera_M_contig7240.17216.1|Name=mRNA_M-pyrifera_M_contig7240.17216.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=278bp
MERDYYSADPKLVDPLLVRRVLIRALKIQGHSVFGLTSNALDLVHAPQIL
ETLAKYKIRFSPPEVRGELPRSGALVMDHPICRGVIFIDNQQAIRHDKGE
VIAEFVGLLLHNANEEIAAEDGGGRARRLEPGKGVWTKFGDGGGGGGNGG
GSGGGNGGGGDIGAVSRRRRRKCVLVDNTSKKCEKALESFVRHAAAEFLE
LHTLHFTEAENLVESPDAVNQLRRILGRLRARGLIGVDLVAEDILVSPGS
SGRTKTVVSAATSAEPNGEVIAAPQGE*
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mRNA from alignment at M-pyrifera_M_contig7240:9094..11308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7240.17216.1 ID=mRNA_M-pyrifera_M_contig7240.17216.1|Name=mRNA_M-pyrifera_M_contig7240.17216.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2215bp|location=Sequence derived from alignment at M-pyrifera_M_contig7240:9094..11308+ (Macrocystis pyrifera P11B4 male)
ATGGAGAGGGACTACTACAGCGCGGACCCGAAGCTCGTCGATCCCCTTTT
GGTCAGGCGCGTCCGTTTTTTGGTCGGTCAGGCACTGCGCGACATATCAC
AGATATTTTGTTTTTTCACGATGACTTGAATTTCGGATGAAACTCGTTTG
TCTCTCTGCCAGCATGGTTTCGATATTTTTTTCTGTCGCTCTGCGTCATT
CTTAGTCTTCGGGCGGGCGTACTGACTGTACAGAATGTCTTATCTATTTA
AATACGCGTAGGTATATAGCGCGTATCACTCCGACTAGTGTGGTTCTCAT
GCAGCAGCGACGCTTGTGGGCAGGGTGGGTGCAGAGCAGGCGATGTCATG
TAATTCCGAATGCACCCGCGCGTTATTTGGCGTACCCTATGCCGACACTG
CAGCGTTTACACTCGCCAAAAACTTTTTCCCTCCAATCCATTTGAGGACT
CGCTCGGACGCCATCGTCTTCCCGACCTCCCTCTCCCTCCTCCTACCGAA
ATCTAGAGTTATCCGCGCTCTGAAGATACAGGGACACAGCGTCTTCGGTT
TGACCTCCAACGCCCTGGATCTCGTGCACGCCCCGCAAATCTTGGAAACC
CTGGCCAAGTACAAAATTAGGTGAGAGCCTGGGTGCGCCTGCATGAGAGC
AAGTTTTCTGGGGGTATGTTTGCAGCGTTTCTGTTTTTTGTAGCAGCGTA
ACGCGTGTTCGCGGACGCCCGGGTAGAGGGAGCCGCTTTTTGCGCGGGCC
GTTGGGGTCAAGAAAGCCACTGAAACAAGGAGTTTGGTATCGCCTGTCAC
ACGTGAAAAATATGGGCCAGCGACACCGCCGTATCAAACGCGTTTCTGTC
GGTCCCGTTCGCTGCAGTCGGTGTTTCTTTTGGAAGCCAGGTTCAGCGCT
CAAAATAAAATTTAACTAGGGTTTTAACCCCTTTTCCTGTTGCCAAAAAA
AAGACACACACACACTGTTGTAGTTCCAAGTGGTTTGTTCCGTAAAAACG
TTGGTGCAGCTCTAGAGGAGGGTAAACAACCGACTGGTGTGAGCGCACAG
CAGCAGCGCAAGTGGTGTCATGTTACGCGCGCGTCTTCAACACTGCTTGC
ACTGCCGTACGTATGATATATCCGGGGGCCATAGTAAATAGGACCTACGG
TACACACCAAAACCTATGTATTTACCTATTTTTACTGACAATATTTGGTC
CTATGTACTATGGTCCCCTAGCCCAGCAGTCCAGTCTCTAATATGAATGG
CCATTGCCGTGATCACCGTTCATTTTCCTCACCCTTTTCCTCCATACTAT
AATATCGGTACTATAATGGTAATACTATGATCGAGTGCCGAACGGGTTGT
TGGCCATAATATAAACACGCACTTTGCAACGATGAACTTCGACGAAATTC
TCGACCTTAGCTGACAGCTGAGGTACCCTTTCTTTTTTTTCGTTACAAAC
ATCTTCCGGGCCGACCAGATGTTCAGTAGCTCTGGCGGGCTGCTCCCTGC
GTTCACCTTCCACCCCGCTGCTATGCTCGGTCCCCCAATGCTCTGGCTCA
CTACCAGATTTTCCCCGCCCGAGGTGAGGGGCGAGCTTCCCCGGAGCGGG
GCGCTGGTGATGGACCACCCGATCTGCCGGGGCGTGATTTTTATCGACAA
CCAACAGGCGATCCGCCACGACAAGGGGGAAGTCATCGCCGAATTTGTCG
GGCTTCTATTGCACAATGCGAACGAAGAAATCGCGGCGGAGGATGGGGGG
GGGCGTGCACGACGTTTAGAACCGGGGAAGGGGGTTTGGACAAAGTTTGG
CGATGGCGGTGGTGGTGGTGGCAACGGTGGCGGCAGTGGCGGTGGCAATG
GCGGTGGCGGAGACATAGGTGCCGTTTCGCGTCGTCGGCGAAGAAAGTGC
GTATTGGTCGATAACACTTCCAAAAAGTGCGAGAAGGCCTTGGAATCATT
CGTGCGGCACGCGGCCGCCGAGTTCTTGGAGCTGCACACGCTGCATTTTA
CCGAGGCTGAGAATCTCGTGGAGTCGCCCGATGCCGTCAACCAGCTGCGA
CGAATCCTTGGCAGGTTGAGAGCTCGAGGGCTTATCGGCGTGGACCTTGT
TGCCGAGGACATTCTGGTCTCGCCGGGAAGTTCTGGTCGAACTAAAACTG
TGGTTTCAGCGGCGACGAGTGCTGAACCGAACGGGGAGGTGATTGCGGCG
CCGCAAGGAGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7240:9094..11308+

>mRNA_M-pyrifera_M_contig7240.17216.1 ID=mRNA_M-pyrifera_M_contig7240.17216.1|Name=mRNA_M-pyrifera_M_contig7240.17216.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1668bp|location=Sequence derived from alignment at M-pyrifera_M_contig7240:9094..11308+ (Macrocystis pyrifera P11B4 male)
ATGGAGAGGGACTACTACAGCGCGGACCCGAAGCTCGTCGATCCCCTTTT
GGTCAGGCGCGTCCATGGAGAGGGACTACTACAGCGCGGACCCGAAGCTC
GTCGATCCCCTTTTGGTCAGGCGCGTCCTTATCCGCGCTCTGAAGATACA
GGGACACAGCGTCTTCGGTTTGACCTCCAACGCCCTGGATCTCGTGCACG
CCCCGCAAATCTTGGAAACCCTGGCCAAGTACAAAATTAGTTATCCGCGC
TCTGAAGATACAGGGACACAGCGTCTTCGGTTTGACCTCCAACGCCCTGG
ATCTCGTGCACGCCCCGCAAATCTTGGAAACCCTGGCCAAGTACAAAATT
AGATTTTCCCCGCCCGAGGTGAGGGGCGAGCTTCCCCGGAGCGGGGCGCT
GGTGATGGACCACCCGATCTGCCGGGGCGTGATTTTTATCGACAACCAAC
AGGCGATCCGCCACGACAAGGGGGAAGTCATCGCCGAATTTGTCGGGCTT
CTATTGCACAATGCGAACGAAGAAATCGCGGCGGAGGATGGGGGGGGGCG
TGCACGACGTTTAGAACCGGGGAAGGGGGTTTGGACAAAGTTTGGCGATG
GCGGTGGTGGTGGTGGCAACGGTGGCGGCAGTGGCGGTGGCAATGGCGGT
GGCGGAGACATAGGTGCCGTTTCGCGTCGTCGGCGAAGAAAGTGCGTATT
GGTCGATAACACTTCCAAAAAGTGCGAGAAGGCCTTGGAATCATTCGTGC
GGCACGCGGCCGCCGAGTTCTTGGAGCTGCACACGCTGCATTTTACCGAG
GCTGAGAATCTCGTGGAGTCGCCCGATGCCGTCAACCAGCTGCGACGAAT
CCTTGGCAGGTTGAGAGCTCGAGGGCTTATCGGCGTGGACCTTGTTGCCG
AGGACATTCTGGTCTCGCCGGGAAGTTCTGGTCGAACTAAAACTGTGGTT
TCAGCGGCGACGAGTGCTGAACCGAACGGGGAGGTGATTGCGGCGCCGCA
AGGAGAGTAAATTTTCCCCGCCCGAGGTGAGGGGCGAGCTTCCCCGGAGC
GGGGCGCTGGTGATGGACCACCCGATCTGCCGGGGCGTGATTTTTATCGA
CAACCAACAGGCGATCCGCCACGACAAGGGGGAAGTCATCGCCGAATTTG
TCGGGCTTCTATTGCACAATGCGAACGAAGAAATCGCGGCGGAGGATGGG
GGGGGGCGTGCACGACGTTTAGAACCGGGGAAGGGGGTTTGGACAAAGTT
TGGCGATGGCGGTGGTGGTGGTGGCAACGGTGGCGGCAGTGGCGGTGGCA
ATGGCGGTGGCGGAGACATAGGTGCCGTTTCGCGTCGTCGGCGAAGAAAG
TGCGTATTGGTCGATAACACTTCCAAAAAGTGCGAGAAGGCCTTGGAATC
ATTCGTGCGGCACGCGGCCGCCGAGTTCTTGGAGCTGCACACGCTGCATT
TTACCGAGGCTGAGAATCTCGTGGAGTCGCCCGATGCCGTCAACCAGCTG
CGACGAATCCTTGGCAGGTTGAGAGCTCGAGGGCTTATCGGCGTGGACCT
TGTTGCCGAGGACATTCTGGTCTCGCCGGGAAGTTCTGGTCGAACTAAAA
CTGTGGTTTCAGCGGCGACGAGTGCTGAACCGAACGGGGAGGTGATTGCG
GCGCCGCAAGGAGAGTAA
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