mRNA_M-pyrifera_M_contig72388.17209.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72388.17209.1
Unique NamemRNA_M-pyrifera_M_contig72388.17209.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: A0A7S0HW18_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HW18_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 9.140e-8
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGLLVDDMVGAF 141
            YKV  +L+VK VR K  YL+KW GY  +E +WEPE  L   D++ AF
Sbjct:   53 YKVQAILEVKKVRGKPQYLIKWEGYEEDENSWEPEDNLDCQDLLEAF 99          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: L2GLU5_VITCO (Chromo domain-containing protein n=1 Tax=Vittaforma corneae (strain ATCC 50505) TaxID=993615 RepID=L2GLU5_VITCO)

HSP 1 Score: 54.7 bits (130), Expect = 9.360e-8
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGLLVDDMVGAFND 147
            + V+ +LD +VV+ KK YL+KW GYP  E TWE E  L+ ++M+ ++ D
Sbjct:   12 FDVERILDDRVVKGKKQYLIKWIGYPDSENTWEYEENLMCEEMLKSYMD 60          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: A0A1Y3N284_PIRSE (Chromo domain-containing protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N284_PIRSE)

HSP 1 Score: 52.4 bits (124), Expect = 1.430e-7
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGLLVDDMVGAFNDN 150
            Y+V+ +LD +    K+ YL+KW GYP+ +A+WEP+  L  ++++  FN N
Sbjct:   32 YEVEEILDKRKHYGKEQYLIKWKGYPLSDASWEPKENLNCEELLKEFNKN 81          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: A0A1J9P6V5_9EURO (Chromo domain-containing protein n=1 Tax=Emergomyces pasteurianus Ep9510 TaxID=1447872 RepID=A0A1J9P6V5_9EURO)

HSP 1 Score: 54.3 bits (129), Expect = 3.900e-7
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPE 105
            Y+V+ +L  K++ + +VYLVKWAGYP+E ATWEPE
Sbjct:   28 YEVEAILAQKILSNGEVYLVKWAGYPLERATWEPE 62          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: S7XVU8_SPRLO (Chromobox protein n=1 Tax=Spraguea lophii (strain 42_110) TaxID=1358809 RepID=S7XVU8_SPRLO)

HSP 1 Score: 52.0 bits (123), Expect = 7.070e-7
Identity = 19/50 (38.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGLLVDDMVGAFNDN 150
            Y V+ ++DV+VV+ +K YL+KW GYP  E TW+  + +   D++  F ++
Sbjct:    7 YNVEKIVDVRVVKGRKQYLIKWEGYPDSENTWQFASDIFCKDLITVFEND 56          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: A0A0K0E390_STRER (Uncharacterized protein n=1 Tax=Strongyloides stercoralis TaxID=6248 RepID=A0A0K0E390_STRER)

HSP 1 Score: 53.5 bits (127), Expect = 7.210e-7
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGL 114
            Y V+ +LD++V   KK+Y +KW GYPV+E TWEP + L
Sbjct:   33 YVVEDILDIRVKNGKKLYKIKWEGYPVDECTWEPASNL 70          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: E9CT96_COCPS (Chromo domain-containing protein n=7 Tax=Coccidioides TaxID=5500 RepID=E9CT96_COCPS)

HSP 1 Score: 53.5 bits (127), Expect = 7.290e-7
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPE 105
            Y+V+C+L  +V   K++YLVKWAGYP+E +TWE E
Sbjct:   26 YEVECILAQRVYHGKEMYLVKWAGYPMERSTWETE 60          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: A0A7S2N5D7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N5D7_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 9.860e-7
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGL-LVDDMVGAFNDNMQA 159
            ++V+ ++D +VV+ KK YLVKW GY  +E TWEP A L  V DMV  F    +A
Sbjct:    9 FEVEKIVDSRVVKKKKEYLVKWKGYSAKENTWEPIAHLETVQDMVDEFEGKGKA 62          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: A0A3E2GRS2_SCYLI (Chromo domain-containing protein (Fragment) n=1 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2GRS2_SCYLI)

HSP 1 Score: 52.8 bits (125), Expect = 1.020e-6
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGLL-VDDMVGAFN-DNMQ 156
            Y+V+ ++D K+   K+ YLVKWAGYP  E TWEPE+ L  V  M+  F  DN++
Sbjct:  185 YQVEAIVDSKLKDGKRHYLVKWAGYPKSENTWEPESHLTKVRAMIKQFRRDNLE 238          
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Match: A0A2B7XBB4_9EURO (Chromo domain-containing protein n=1 Tax=Blastomyces parvus TaxID=2060905 RepID=A0A2B7XBB4_9EURO)

HSP 1 Score: 52.0 bits (123), Expect = 2.560e-6
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1
Query:    1 YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPE 105
            Y V+C+L  K + +   YLVKW GYP+E ATWEPE
Sbjct:   31 YDVECILAQKTLSTGDAYLVKWGGYPLERATWEPE 65          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72388.17209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S0HW18_9EUKA9.140e-851.06Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
L2GLU5_VITCO9.360e-844.90Chromo domain-containing protein n=1 Tax=Vittaform... [more]
A0A1Y3N284_PIRSE1.430e-740.00Chromo domain-containing protein n=1 Tax=Piromyces... [more]
A0A1J9P6V5_9EURO3.900e-760.00Chromo domain-containing protein n=1 Tax=Emergomyc... [more]
S7XVU8_SPRLO7.070e-738.00Chromobox protein n=1 Tax=Spraguea lophii (strain ... [more]
A0A0K0E390_STRER7.210e-752.63Uncharacterized protein n=1 Tax=Strongyloides ster... [more]
E9CT96_COCPS7.290e-757.14Chromo domain-containing protein n=7 Tax=Coccidioi... [more]
A0A7S2N5D7_9EUKA9.860e-748.15Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A3E2GRS2_SCYLI1.020e-648.15Chromo domain-containing protein (Fragment) n=1 Ta... [more]
A0A2B7XBB4_9EURO2.560e-657.14Chromo domain-containing protein n=1 Tax=Blastomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72388contigM-pyrifera_M_contig72388:758..919 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.4045188-CDS-M-pyrifera_M_contig72388:757..9191622816620.4045188-CDS-M-pyrifera_M_contig72388:757..919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72388 758..919 +
1692278081.3582842-CDS-M-pyrifera_M_contig72388:757..9191692278081.3582842-CDS-M-pyrifera_M_contig72388:757..919Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72388 758..919 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72388.17209.1prot_M-pyrifera_M_contig72388.17209.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72388 758..919 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72388.17209.1

>prot_M-pyrifera_M_contig72388.17209.1 ID=prot_M-pyrifera_M_contig72388.17209.1|Name=mRNA_M-pyrifera_M_contig72388.17209.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=54bp
YKVDCLLDVKVVRSKKVYLVKWAGYPVEEATWEPEAGLLVDDMVGAFNDN
MQAG
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mRNA from alignment at M-pyrifera_M_contig72388:758..919+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72388.17209.1 ID=mRNA_M-pyrifera_M_contig72388.17209.1|Name=mRNA_M-pyrifera_M_contig72388.17209.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=162bp|location=Sequence derived from alignment at M-pyrifera_M_contig72388:758..919+ (Macrocystis pyrifera P11B4 male)
TACAAGGTGGATTGTCTGCTGGACGTGAAGGTCGTCCGCAGCAAGAAGGT GTACCTAGTCAAGTGGGCTGGGTACCCTGTCGAAGAAGCGACATGGGAGC CCGAGGCGGGCTTGCTCGTCGATGACATGGTTGGTGCCTTCAACGACAAC ATGCAGGCTGGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72388:758..919+

>mRNA_M-pyrifera_M_contig72388.17209.1 ID=mRNA_M-pyrifera_M_contig72388.17209.1|Name=mRNA_M-pyrifera_M_contig72388.17209.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=324bp|location=Sequence derived from alignment at M-pyrifera_M_contig72388:758..919+ (Macrocystis pyrifera P11B4 male)
TACAAGGTGGATTGTCTGCTGGACGTGAAGGTCGTCCGCAGCAAGAAGGT
GTACCTAGTCAAGTGGGCTGGGTACCCTGTCGAAGAAGCGACATGGGAGC
CCGAGGCGGGCTTGCTCGTCGATGACATGGTTGGTGCCTTCAACGACAAC
ATGCAGGCTGGGTACAAGGTGGATTGTCTGCTGGACGTGAAGGTCGTCCG
CAGCAAGAAGGTGTACCTAGTCAAGTGGGCTGGGTACCCTGTCGAAGAAG
CGACATGGGAGCCCGAGGCGGGCTTGCTCGTCGATGACATGGTTGGTGCC
TTCAACGACAACATGCAGGCTGGG
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