mRNA_M-pyrifera_M_contig72353.17206.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72353.17206.1
Unique NamemRNA_M-pyrifera_M_contig72353.17206.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A7S0CXX3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CXX3_9EUKA)

HSP 1 Score: 70.5 bits (171), Expect = 7.790e-12
Identity = 39/115 (33.91%), Postives = 57/115 (49.57%), Query Frame = 1
Query:    1 AAHLRTKPWTKHLHAILTAQVPVIKTKVAVRHLPDSGGVGDGSEEEIVDLDITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            A HL  + W + +  I  A VP++K     R            E   + LD++  +P+HRG++T A  + L +    L PL +++K  LV  GL D Y GGL SY LVL+    L
Sbjct:  196 ARHLSKQKWVQVVKTIERAAVPIVKVTATFR------------EASGIQLDLSFDSPSHRGLSTCAFVRGLCAEFPMLVPLTMVLKQFLVTRGLNDPYSGGLSSYGLVLMLTRVL 298          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A7S1N008_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis cordata TaxID=118079 RepID=A0A7S1N008_9EUKA)

HSP 1 Score: 62.0 bits (149), Expect = 3.830e-9
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  148 LDITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            +DI++Q+P H+G+   A+ ++L+ +   L P+ L++K  L + GL  AY GGL SY L L+  +FL
Sbjct:   59 IDISVQSPNHKGLLAAAVVRELLEIFPELCPITLVIKSFLQQQGLSKAYTGGLSSYCLTLMVASFL 124          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A7S3E1C1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3E1C1_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 4.160e-9
Identity = 26/66 (39.39%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  148 LDITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            +DI++Q+P H+G+   A+ ++L+ +   L P+ L++K  L + GL  AY GGL SY L L+  +FL
Sbjct:  123 IDISVQSPNHKGLLAAAVVRELLEIFPELCPITLVIKSFLQQQGLSKAYTGGLSSYCLTLMVASFL 188          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A7J6SMQ8_PEROL (Uncharacterized protein (Fragment) n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SMQ8_PEROL)

HSP 1 Score: 60.8 bits (146), Expect = 1.950e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  142 VDLDITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            V + I++  PAH G+ T+A    L      L PLVL++KH+LV DGL   Y GG+ SY LVL+  +FL
Sbjct:  255 VKIQISVTGPAHSGIETSAYVAMLCQHYDCLRPLVLVIKHVLVCDGLVTPYDGGMSSYTLVLMVVSFL 322          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A7J6LTA8_PEROL (Peptidase_M14 domain-containing protein n=3 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LTA8_PEROL)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  142 VDLDITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            V + I++  PAH G+ T+A    L      L PLVL++KH+LV DGL   Y GG+ SY LVL+  +FL
Sbjct:  335 VKIQISVTGPAHSGIETSAYVAMLCQHYDCLRPLVLVIKHVLVCDGLVTPYDGGMSSYTLVLMVVSFL 402          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: C5LK74_PERM5 (NTP_transf_2 domain-containing protein n=2 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LK74_PERM5)

HSP 1 Score: 60.5 bits (145), Expect = 2.730e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  142 VDLDITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            V + I++  PAH G+ T+A    L      L PLVL++KH+LV DGL   Y GG+ SY LVL+  +FL
Sbjct:  385 VKVQISVTGPAHSGIETSAYVAMLCQHYDCLRPLVLVIKHVLVCDGLVTPYDGGMSSYTLVLMVVSFL 452          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A7J6MK94_PERCH (NTP_transf_2 domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MK94_PERCH)

HSP 1 Score: 60.5 bits (145), Expect = 2.730e-8
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = 1
Query:  142 VDLDITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            V + I++  PAH G+ T+A    L      L PLVL++KH+LV DGL   Y GG+ SY LVL+  +FL
Sbjct:  388 VKVQISVAGPAHSGIETSAYVAMLCQHYDCLRPLVLVIKHILVCDGLVTPYDGGMSSYTLVLMVVSFL 455          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A0A1U510_ENTIV (PAP-associated domain containing protein, putative n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U510_ENTIV)

HSP 1 Score: 51.2 bits (121), Expect = 4.270e-5
Identity = 27/74 (36.49%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  136 EIVDLDIT----LQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            +++DLD T    L      G+ ++A+T  L++ S     + L VK+++ ++ L + Y GG+GSYA+VLLT  FL
Sbjct:  119 KLLDLDTTISIDLSINCEGGIDSSALTHSLLTSSQFTQEIALFVKYLVFQNNLNEPYHGGIGSYAIVLLTATFL 192          
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Match: A0A7J6MIB9_PERCH (Homoserine dehydrogenase n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MIB9_PERCH)

HSP 1 Score: 50.8 bits (120), Expect = 6.550e-5
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1
Query:  232 LHPLVLIVKHMLVKDGLGDAYGGGLGSYALVLLTQAFL 345
            L PLVL+VKH+L+ DGL   Y GG+ SY LVL+T +FL
Sbjct:  163 LRPLVLMVKHVLLCDGLVSTYNGGVSSYTLVLMTVSFL 200          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72353.17206.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S0CXX3_9EUKA7.790e-1233.91Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S1N008_9EUKA3.830e-939.39Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S3E1C1_9CHLO4.160e-939.39Hypothetical protein (Fragment) n=1 Tax=Chloropico... [more]
A0A7J6SMQ8_PEROL1.950e-845.59Uncharacterized protein (Fragment) n=1 Tax=Perkins... [more]
A0A7J6LTA8_PEROL2.060e-845.59Peptidase_M14 domain-containing protein n=3 Tax=Pe... [more]
C5LK74_PERM52.730e-845.59NTP_transf_2 domain-containing protein n=2 Tax=Per... [more]
A0A7J6MK94_PERCH2.730e-845.59NTP_transf_2 domain-containing protein n=1 Tax=Per... [more]
A0A0A1U510_ENTIV4.270e-536.49PAP-associated domain containing protein, putative... [more]
A0A7J6MIB9_PERCH6.550e-560.53Homoserine dehydrogenase n=1 Tax=Perkinsus chesape... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72353contigM-pyrifera_M_contig72353:3..395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.7e-12
Seed eggNOG ortholog112098.XP_008616227.1
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons2
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816620.2552931-CDS-M-pyrifera_M_contig72353:2..1321622816620.2552931-CDS-M-pyrifera_M_contig72353:2..132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72353 3..132 +
1692278081.2660117-CDS-M-pyrifera_M_contig72353:2..1321692278081.2660117-CDS-M-pyrifera_M_contig72353:2..132Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72353 3..132 +
1622816620.2658644-CDS-M-pyrifera_M_contig72353:180..3951622816620.2658644-CDS-M-pyrifera_M_contig72353:180..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72353 181..395 +
1692278081.277902-CDS-M-pyrifera_M_contig72353:180..3951692278081.277902-CDS-M-pyrifera_M_contig72353:180..395Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72353 181..395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72353.17206.1prot_M-pyrifera_M_contig72353.17206.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72353 3..395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72353.17206.1

>prot_M-pyrifera_M_contig72353.17206.1 ID=prot_M-pyrifera_M_contig72353.17206.1|Name=mRNA_M-pyrifera_M_contig72353.17206.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=115bp
AAHLRTKPWTKHLHAILTAQVPVIKTKVAVRHLPDSGGVGDGSEEEIVDL
DITLQTPAHRGMATTAITKKLVSVSAPLHPLVLIVKHMLVKDGLGDAYGG
GLGSYALVLLTQAFL
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mRNA from alignment at M-pyrifera_M_contig72353:3..395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72353.17206.1 ID=mRNA_M-pyrifera_M_contig72353.17206.1|Name=mRNA_M-pyrifera_M_contig72353.17206.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=393bp|location=Sequence derived from alignment at M-pyrifera_M_contig72353:3..395+ (Macrocystis pyrifera P11B4 male)
GCTGCACATTTACGAACCAAACCTTGGACAAAGCACCTCCATGCAATCTT AACTGCCCAAGTTCCTGTCATCAAAACCAAGGTTGCAGTGAGGCACTTGC CTGATAGTGGTGGGGTTGGAGATGGAAGTGGTGAAGGTGGGGATAGAGTT GTGGGAGAAGGTGGGGGTGTGGATGAAGAGGAGGAGATTGTAGATCTTGA TATTACACTTCAAACTCCGGCACATCGTGGAATGGCGACCACTGCAATCA CAAAAAAGTTGGTTTCCGTGTCGGCACCACTTCATCCTCTTGTTCTCATT GTCAAGCACATGTTGGTGAAGGATGGATTAGGTGATGCGTATGGTGGTGG GTTAGGTTCGTATGCACTTGTGCTTCTCACACAAGCATTTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig72353:3..395+

>mRNA_M-pyrifera_M_contig72353.17206.1 ID=mRNA_M-pyrifera_M_contig72353.17206.1|Name=mRNA_M-pyrifera_M_contig72353.17206.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=690bp|location=Sequence derived from alignment at M-pyrifera_M_contig72353:3..395+ (Macrocystis pyrifera P11B4 male)
GCTGCACATTTACGAACCAAACCTTGGACAAAGCACCTCCATGCAATCTT
AACTGCCCAAGTTCCTGTCATCAAAACCAAGGTTGCAGTGAGGCACTTGC
CTGATAGTGGTGGGGTTGGAGATGGAAGTGGCTGCACATTTACGAACCAA
ACCTTGGACAAAGCACCTCCATGCAATCTTAACTGCCCAAGTTCCTGTCA
TCAAAACCAAGGTTGCAGTGAGGCACTTGCCTGATAGTGGTGGGGTTGGA
GATGGAAGTGAGGAGGAGATTGTAGATCTTGATATTACACTTCAAACTCC
GGCACATCGTGGAATGGCGACCACTGCAATCACAAAAAAGTTGGTTTCCG
TGTCGGCACCACTTCATCCTCTTGTTCTCATTGTCAAGCACATGTTGGTG
AAGGATGGATTAGGTGATGCGTATGGTGGTGGGTTAGGTTCGTATGCACT
TGTGCTTCTCACACAAGCATTTCTTAGGAGGAGATTGTAGATCTTGATAT
TACACTTCAAACTCCGGCACATCGTGGAATGGCGACCACTGCAATCACAA
AAAAGTTGGTTTCCGTGTCGGCACCACTTCATCCTCTTGTTCTCATTGTC
AAGCACATGTTGGTGAAGGATGGATTAGGTGATGCGTATGGTGGTGGGTT
AGGTTCGTATGCACTTGTGCTTCTCACACAAGCATTTCTT
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