mRNA_M-pyrifera_M_contig72342.17200.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig72342.17200.1
Unique NamemRNA_M-pyrifera_M_contig72342.17200.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: A0A7S4ME00_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ME00_9EUKA)

HSP 1 Score: 199 bits (507), Expect = 1.000e-58
Identity = 104/203 (51.23%), Postives = 145/203 (71.43%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGEVKMEAAHQELLDFLIAGDDVTIFNGEEEVFQFARAVSRLQEMRTSEYLA 609
            LLK +V  L LDSG+DYRLTG+   +VF  P NE +A ++++ FK    D      TI H+ R + +   TE+GVARF+F++LC +P+GA D+  I ++FHTVF+ +VP+M  S+KTEAKRFI+L+D +Y+++  LV  A+  P+ LFTH P +++ + A +ELLDFL   D  T+F GEEEVFQFARAVSRL+EM+T EYLA
Sbjct:  241 LLKLKVITLNLDSGIDYRLTGTMSTTVFHTPLNEEVAEKIEQLFKVLTNDNPAIPKTITHQSRKIYVPECTENGVARFNFADLCMKPMGAGDYNIICQQFHTVFVCNVPQMSLSEKTEAKRFIILIDTMYESKTKLVCSAEVPPEKLFTHDPTQLQQDNATKELLDFLHE-DSATMFTGEEEVFQFARAVSRLREMQTEEYLA 442          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: A0A6P4ZZJ2_BRABE (putative ATPase N2B n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4ZZJ2_BRABE)

HSP 1 Score: 150 bits (379), Expect = 5.290e-39
Identity = 82/215 (38.14%), Postives = 125/215 (58.14%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGE--------VKMEAAHQELLDF-LIAGDD---VTIFNGEEEVFQFARAVSRLQEMRTSEYLA 609
            LL +  +++ +DSG DYRL  S G+  + YP +      + +AFK AVG E+V  +++   GR + + +ST+SGVARF+FSELC  PLG  D++ I   F T+F+D +P+M   QK EA+RF+  +DA Y+ +  +   A   P+ LF   P E        ++ME   +   D  L+ G D   + I +G +E+F F RA+SRL EM++  Y A
Sbjct:  250 LLSESCEIVHIDSGTDYRLLQSVGQQAYFYPISPLNEDMLDQAFKAAVGTEDVTPSSVTVYGRKVKVPISTQSGVARFTFSELCRSPLGPADYLTICNNFSTIFIDHIPQMTIYQKNEARRFLSFIDAAYETRTKIFCTAQARPEDLFLLIPSEGEGREAQAMEMEMIGEMAFDMKLLRGMDARHIPILSGRDEIFSFRRAISRLNEMQSRSYQA 464          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: A0A6M2CMA9_RHIMP (Putative atpase n=9 Tax=Ixodidae TaxID=6939 RepID=A0A6M2CMA9_RHIMP)

HSP 1 Score: 144 bits (362), Expect = 2.550e-37
Identity = 82/207 (39.61%), Postives = 127/207 (61.35%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEE---VKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGEVKMEAAHQELLDFL-IAGDDVTIFNGEEEVFQFARAVSRLQEMRTSEYLA 609
            +LKK    + LDSGVDYR+     ++ F + ++E+ A +  +   + +  +E   ++   +  KGR +  H  T   +   SFSELC+  +GAVD++A+++ FHT+ + DVP +   +KT+A+RFI LVD LYDN+V LV+ AD  PD LF     +  +   ++ L+D L I+  DV+IF+GEEE+F F R VSRL EM++  Y A
Sbjct:  245 VLKKNCLPVALDSGVDYRIQKGATKTSFYFVKSESAADKELDRLFKVLASQENDIIRPRVLTIKGRNVEFH-KTCGRILDASFSELCDRAVGAVDYLALSQIFHTILIRDVPVLTLREKTQARRFITLVDTLYDNRVRLVLSADAPPDKLFQAVKSDDSLTDENRSLMDDLQISDKDVSIFSGEEEMFAFERTVSRLNEMQSENYWA 450          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: A0A367ILR8_RHIST (Uncharacterized protein n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367ILR8_RHIST)

HSP 1 Score: 140 bits (352), Expect = 1.790e-36
Identity = 79/204 (38.73%), Postives = 118/204 (57.84%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGEVKMEAA-HQELLDFLIAGD-DVTIFNGEEEVFQFARAVSRLQEMRTSEYL 606
            LL ++ DVLCLDSG DYR        VF YP N     R++E  +R    + +K   +    R L I    + GVA+  FS++C +PL A D++ I K FHTV L D+P+M    + EA+RFI  +DA+Y++QV LV  A+     +F  + G+ +ME    +E+ DF    D    +F G+EE F F RA+SRL +M+++E++
Sbjct:  167 LLLEKCDVLCLDSGTDYRKMERAQSHVFFYPLNYDTQNRIEEITRRVTQGKPMKPMELSFLSRTLKIPQQVD-GVAKVRFSDVCAQPLSAADYLEIVKNFHTVILTDIPRMTMKHRPEARRFITFIDAMYESQVTLVASAENNMMEIFNAEEGKEEMEEQMRREMGDFTDTSDVSSPLFTGQEEAFAFQRALSRLIQMQSTEWV 369          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: UPI000644FFE8 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644FFE8)

HSP 1 Score: 141 bits (356), Expect = 3.440e-36
Identity = 81/196 (41.33%), Postives = 116/196 (59.18%), Query Frame = 1
Query:   31 LDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRA-VGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGEVKMEAAH--QELLDFLIAGDDVTIFNGEEEVFQFARAVSRLQEMRTSEYLA 609
            L+SG+DYRLTG   ++V+L P       +    F     G+E V ET   +  R L +  S   G+A + F ELC+  LGA D+IAI+K+FHTVF++DVP M  S K +A+RFI LVD LY+++V L++ A+  P  LF     +V    A   Q   D  +  + ++ F GEEE F F+RAVSR+ EM++  YL+
Sbjct:  299 LNSGLDYRLTGKRSKNVYLTPLTPENKEKFYHLFDELRQGEEVVSETITINASRQLVVPRSAR-GIALYRFKELCDAALGAADYIAISKQFHTVFIEDVPSMNESTKNQARRFITLVDVLYEHKVKLIICAEAAPSRLFMSNAEDVDTTTAEFRQMTDDLKLTPEQLSRFTGEEERFMFSRAVSRMVEMQSDSYLS 493          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: UPI0015FFEE1B (putative ATPase N2B n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0015FFEE1B)

HSP 1 Score: 140 bits (353), Expect = 7.120e-36
Identity = 79/215 (36.74%), Postives = 122/215 (56.74%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGE--------VKMEAAHQELLDF-LIAGDD---VTIFNGEEEVFQFARAVSRLQEMRTSEYLA 609
            LL K  +++ +DS  DYRL  S G+  + YP +      + +AFK AVG E V  +++   GR + I +ST +GVARF+FSELC  PLG  D++ I   + T+F+D +P+M   QK EA+RF+  +DA Y+ +  +   A+   + LF   P E        ++ME   +   D  L+ G D   + + +G +E+F F RA+SRL EM++  Y A
Sbjct:  249 LLSKSCEIVHIDSEKDYRLVQSAGQQAYYYPISPLNEDLLDQAFKAAVGTENVTPSSVTVYGRQVEIPISTRTGVARFTFSELCRSPLGPADYLTICNNYSTIFVDHIPQMTIYQKNEARRFLSFIDAAYETRTKIFCTAEARAENLFLLIPSEGDGEEAQAMEMEMIGEMAFDMKLLKGMDARHIPMISGRDEIFSFRRAISRLNEMQSRGYQA 463          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: A0A1M6Z9R8_9HYPH (Cell division protein ZapE n=2 Tax=Roseibium TaxID=150830 RepID=A0A1M6Z9R8_9HYPH)

HSP 1 Score: 138 bits (348), Expect = 8.360e-36
Identity = 83/203 (40.89%), Postives = 110/203 (54.19%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGEVKMEAAHQELLDFLIAGDDVTIFNGEEEVFQFARAVSRLQEMRTSEYLA 609
            LL + VDV+ LDS  DYRL    G  V++ P     A R++  +K+         T +++KGRV+P+ M   SG ARF+F ELC +PLGA D++ IA  F TVFL++VP M  +++ EAKRFI L+D LYDN V LV+ AD  PD L+    G                            E F+F R  SRL EMR+  YLA
Sbjct:  204 LLSQNVDVVMLDSPTDYRLEKLGGADVYVSPLGSEAAERIEGLWKKLTHGVTPHSTQLENKGRVIPVRM-VASGAARFTFDELCMQPLGAADYLRIAHGFGTVFLENVPVMSKARRNEAKRFINLIDTLYDNGVRLVISADAEPDKLYQAVDGT---------------------------EAFEFDRTTSRLIEMRSEAYLA 378          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: C3ZEH4_BRAFL (Uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZEH4_BRAFL)

HSP 1 Score: 137 bits (346), Expect = 8.670e-36
Identity = 78/213 (36.62%), Postives = 120/213 (56.34%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGE--------VKMEAAHQELLDF-LIAGDD---VTIFNGEEEVFQFARAVSRLQEMRTSEY 603
            LL +  +++ +DS  DYRL  S G+  + YP +      + +AFK AVG E V  +++   GR + I +ST +GVARF+FSELC  PLG  D++ I   + T+F+D +P+M   QK EA+RF+  +DA Y+ +  +   A    + LF   P E        ++ME   +   D  L+ G D   + I +G +E+F F RA+SRL EM++  Y
Sbjct:  141 LLSESCEIVHIDSEKDYRLVQSAGQQAYYYPISPLNEDLLDQAFKAAVGKENVMPSSVTVYGRQVEIPISTHTGVARFTFSELCRSPLGPADYLTICNNYSTIFVDHIPQMTIYQKNEARRFLSFIDAAYEMRTKIFCTAQARAENLFLLIPSEGDGEEAQAMEMEMIGEMAFDMKLLKGMDARHIPIISGRDEIFSFRRAISRLNEMQSRGY 353          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: A0A545TQT7_9PROT (AFG1 family ATPase n=1 Tax=Denitrobaculum tricleocarpae TaxID=2591009 RepID=A0A545TQT7_9PROT)

HSP 1 Score: 138 bits (347), Expect = 9.000e-36
Identity = 80/203 (39.41%), Postives = 115/203 (56.65%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGEVKMEAAHQELLDFLIAGDDVTIFNGEEEVFQFARAVSRLQEMRTSEYLA 609
            LLK+R+DVL LDSGVDYR        V+  P     +  +++AFK+         T++  KGR LP+ M+   GVARF+F ELC +PLGA D++AIA +FH+V L  VP +    + +A+RF+ L+DALY+++V+LV+ A+  P+ L+    G                              F+F R VSRLQEMR+SEY+A
Sbjct:  195 LLKQRLDVLELDSGVDYRRHRMRNLPVYYAPLGPRASASLEDAFKQLTDGAVAAPTSLHFKGRSLPVSMAAR-GVARFTFDELCAKPLGAGDYLAIAVQFHSVILSGVPALGPENRDQARRFMTLIDALYEHRVNLVISAEAPPERLYPTGDG-----------------------------AFEFERTVSRLQEMRSSEYIA 367          
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Match: A0A2W5FHJ0_9PROT (Cell division protein ZapE n=1 Tax=Micavibrio aeruginosavorus TaxID=349221 RepID=A0A2W5FHJ0_9PROT)

HSP 1 Score: 138 bits (347), Expect = 9.170e-36
Identity = 78/202 (38.61%), Postives = 111/202 (54.95%), Query Frame = 1
Query:    1 LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGDEEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKFHTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTHKPGEVKMEAAHQELLDFLIAGDDVTIFNGEEEVFQFARAVSRLQEMRTSEYL 606
            L+KKR+D++ L+  +DYR    +  SV+  P     A R    F     +EE     I  K R + + +  + GVARFSF++LCE PLGA D++AIAK++HTVFL+D+PK+   ++ EAKRF+ LVD  YDN  +LV+ AD  PD L++                             G +  ++F R VSRLQEM+T  YL
Sbjct:  198 LIKKRMDIVNLNGDIDYRARKLKEMSVYFSPLGRESADRANNLFASLTENEEPYPDLISVKARTIEVPVVAK-GVARFSFAQLCERPLGAEDYLAIAKRYHTVFLEDIPKLGYDRRNEAKRFMTLVDVFYDNHRNLVITADAAPDKLYS-----------------------------GHDHAYEFERTVSRLQEMQTQSYL 369          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72342.17200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4ME00_9EUKA1.000e-5851.23Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A6P4ZZJ2_BRABE5.290e-3938.14putative ATPase N2B n=2 Tax=Branchiostoma TaxID=77... [more]
A0A6M2CMA9_RHIMP2.550e-3739.61Putative atpase n=9 Tax=Ixodidae TaxID=6939 RepID=... [more]
A0A367ILR8_RHIST1.790e-3638.73Uncharacterized protein n=1 Tax=Rhizopus stolonife... [more]
UPI000644FFE83.440e-3641.33hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
UPI0015FFEE1B7.120e-3636.74putative ATPase N2B n=1 Tax=Branchiostoma floridae... [more]
A0A1M6Z9R8_9HYPH8.360e-3640.89Cell division protein ZapE n=2 Tax=Roseibium TaxID... [more]
C3ZEH4_BRAFL8.670e-3636.62Uncharacterized protein (Fragment) n=1 Tax=Branchi... [more]
A0A545TQT7_9PROT9.000e-3639.41AFG1 family ATPase n=1 Tax=Denitrobaculum tricleoc... [more]
A0A2W5FHJ0_9PROT9.170e-3638.61Cell division protein ZapE n=1 Tax=Micavibrio aeru... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig72342contigM-pyrifera_M_contig72342:380..1064 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score141.4
Seed ortholog evalue4.8e-31
Seed eggNOG ortholog45351.EDO33877
Preferred nameLACE1
KEGG koko:K18798
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007600,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0017144,GO:0019233,GO:0019538,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0030163,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0034641,GO:0035694,GO:0042773,GO:0042775,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0050877,GO:0055086,GO:0055114,GO:0071704,GO:0071840,GO:0072521,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.lactation elevated
EggNOG OGs38DES@33154,3B9YK@33208,COG1485@1,KOG2383@2759
EC3.6.4.7
COG Functional cat.J
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Exons2
Model size609
Cds size609
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816619.9832208-CDS-M-pyrifera_M_contig72342:379..8991622816619.9832208-CDS-M-pyrifera_M_contig72342:379..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72342 380..899 -
1692278081.1055589-CDS-M-pyrifera_M_contig72342:379..8991692278081.1055589-CDS-M-pyrifera_M_contig72342:379..899Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72342 380..899 -
1622816619.9965258-CDS-M-pyrifera_M_contig72342:975..10641622816619.9965258-CDS-M-pyrifera_M_contig72342:975..1064Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72342 976..1064 -
1692278081.1226864-CDS-M-pyrifera_M_contig72342:975..10641692278081.1226864-CDS-M-pyrifera_M_contig72342:975..1064Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig72342 976..1064 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig72342.17200.1prot_M-pyrifera_M_contig72342.17200.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig72342 380..1064 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig72342.17200.1

>prot_M-pyrifera_M_contig72342.17200.1 ID=prot_M-pyrifera_M_contig72342.17200.1|Name=mRNA_M-pyrifera_M_contig72342.17200.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=203bp
LLKKRVDVLCLDSGVDYRLTGSEGESVFLYPRNEAMATRMQEAFKRAVGD
EEVKETTIQHKGRVLPIHMSTESGVARFSFSELCEEPLGAVDFIAIAKKF
HTVFLDDVPKMKASQKTEAKRFIVLVDALYDNQVHLVVRADCGPDLLFTH
KPGEVKMEAAHQELLDFLIAGDDVTIFNGEEEVFQFARAVSRLQEMRTSE
YLA
back to top

mRNA from alignment at M-pyrifera_M_contig72342:380..1064-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig72342.17200.1 ID=mRNA_M-pyrifera_M_contig72342.17200.1|Name=mRNA_M-pyrifera_M_contig72342.17200.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=685bp|location=Sequence derived from alignment at M-pyrifera_M_contig72342:380..1064- (Macrocystis pyrifera P11B4 male)
CTCCTCAAGAAGAGGGTCGATGTACTCTGTCTAGACTCTGGTGTTGACTA CAGACTTACGGGCAGCGAAGGAGAGTCCGTGTTTCTTTAGTAAGTCAGTT GCGCCTTCTCTTTCGTACTTGGCACAGCCCTCATCTCTGTGACGCCGTTG GCTTACAACTTCCAGCCCTCGTAACGAAGCCATGGCTACACGCATGCAAG AGGCCTTCAAGAGGGCCGTGGGAGACGAAGAAGTGAAGGAAACGACCATT CAGCACAAGGGCCGTGTGTTGCCCATCCACATGTCGACCGAGAGCGGCGT CGCGCGCTTCTCTTTCTCGGAGCTGTGTGAGGAGCCCTTGGGCGCCGTGG ACTTCATTGCGATTGCCAAGAAATTCCACACCGTCTTCCTCGACGACGTG CCCAAGATGAAGGCCAGCCAGAAGACCGAGGCCAAGCGCTTCATTGTGCT GGTGGACGCGCTCTACGACAACCAGGTCCACCTCGTCGTCAGGGCGGACT GTGGGCCCGACCTTCTCTTCACACACAAGCCAGGAGAGGTGAAGATGGAG GCGGCACACCAGGAGCTGCTCGACTTCCTCATCGCAGGCGACGACGTCAC CATCTTCAACGGTGAGGAGGAAGTGTTCCAGTTCGCTCGAGCCGTCTCGA GGCTGCAGGAGATGCGCACCAGCGAATACCTCGCC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig72342:380..1064-

>mRNA_M-pyrifera_M_contig72342.17200.1 ID=mRNA_M-pyrifera_M_contig72342.17200.1|Name=mRNA_M-pyrifera_M_contig72342.17200.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1218bp|location=Sequence derived from alignment at M-pyrifera_M_contig72342:380..1064- (Macrocystis pyrifera P11B4 male)
CTCCTCAAGAAGAGGGTCGATGTACTCTGTCTAGACTCTGGTGTTGACTA
CAGACTTACGGGCAGCGAAGGAGAGTCCGTGTTTCTTTACTCCTCAAGAA
GAGGGTCGATGTACTCTGTCTAGACTCTGGTGTTGACTACAGACTTACGG
GCAGCGAAGGAGAGTCCGTGTTTCTTTACCCTCGTAACGAAGCCATGGCT
ACACGCATGCAAGAGGCCTTCAAGAGGGCCGTGGGAGACGAAGAAGTGAA
GGAAACGACCATTCAGCACAAGGGCCGTGTGTTGCCCATCCACATGTCGA
CCGAGAGCGGCGTCGCGCGCTTCTCTTTCTCGGAGCTGTGTGAGGAGCCC
TTGGGCGCCGTGGACTTCATTGCGATTGCCAAGAAATTCCACACCGTCTT
CCTCGACGACGTGCCCAAGATGAAGGCCAGCCAGAAGACCGAGGCCAAGC
GCTTCATTGTGCTGGTGGACGCGCTCTACGACAACCAGGTCCACCTCGTC
GTCAGGGCGGACTGTGGGCCCGACCTTCTCTTCACACACAAGCCAGGAGA
GGTGAAGATGGAGGCGGCACACCAGGAGCTGCTCGACTTCCTCATCGCAG
GCGACGACGTCACCATCTTCAACGGTGAGGAGGAAGTGTTCCAGTTCGCT
CGAGCCGTCTCGAGGCTGCAGGAGATGCGCACCAGCGAATACCTCGCCCC
CTCGTAACGAAGCCATGGCTACACGCATGCAAGAGGCCTTCAAGAGGGCC
GTGGGAGACGAAGAAGTGAAGGAAACGACCATTCAGCACAAGGGCCGTGT
GTTGCCCATCCACATGTCGACCGAGAGCGGCGTCGCGCGCTTCTCTTTCT
CGGAGCTGTGTGAGGAGCCCTTGGGCGCCGTGGACTTCATTGCGATTGCC
AAGAAATTCCACACCGTCTTCCTCGACGACGTGCCCAAGATGAAGGCCAG
CCAGAAGACCGAGGCCAAGCGCTTCATTGTGCTGGTGGACGCGCTCTACG
ACAACCAGGTCCACCTCGTCGTCAGGGCGGACTGTGGGCCCGACCTTCTC
TTCACACACAAGCCAGGAGAGGTGAAGATGGAGGCGGCACACCAGGAGCT
GCTCGACTTCCTCATCGCAGGCGACGACGTCACCATCTTCAACGGTGAGG
AGGAAGTGTTCCAGTTCGCTCGAGCCGTCTCGAGGCTGCAGGAGATGCGC
ACCAGCGAATACCTCGCC
back to top