mRNA_M-pyrifera_M_contig72181.17173.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig72181.17173.1 vs. uniprot
Match: A0A6S7HHK7_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HHK7_PARCT) HSP 1 Score: 105 bits (263), Expect = 3.370e-24 Identity = 58/151 (38.41%), Postives = 81/151 (53.64%), Query Frame = 1 Query: 25 FLLLPGAVLACTSSMDCSLNGECVSGVCKCDRPWNGSTCGELDVDPTPVISYGHGTGNVSSWGGGPPVRWTDGAYHLLVTEIAGGCGMCTWSRMSQIAHAVSPNPQGPFKRVGTAVPTQSHNAYYAFSASDNTHLLYHIFGG---NNPESC 468 F L+ + C +S+DCSLNG+CV GVC CD W G+ C ++D+ P S H +SWGG P + DG +HL V+++ C + + S+I A S +P GPF TAVP +HN + +D T LLY I G P +C Sbjct: 11 FFLISQSKAECNNSLDCSLNGDCVQGVCACDYAWIGAACNKMDILPMNKNSGYHNHTAGASWGGIP--IYVDGKWHLFVSQMVNNCSLDYYGTNSEIIRAESDSPGGPFVYAETAVPVFAHNPTVCIT-NDGTFLLYMIGNGVSLEEPVNC 158
BLAST of mRNA_M-pyrifera_M_contig72181.17173.1 vs. uniprot
Match: A0A0G4F1S7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F1S7_9ALVE) HSP 1 Score: 100 bits (248), Expect = 1.330e-22 Identity = 58/145 (40.00%), Postives = 74/145 (51.03%), Query Frame = 1 Query: 52 ACTSSMDCSLNGECVSGVCKCDRPWNGSTCGELDVD-PTPVISYGHGTGNVSSWGGGPPVRWTDGAYHLLVTEIAGGCGMCTWSRMSQIAHAVSPNPQGPFKRVGTAVPTQSHNAYYAFSASD------NTHLLYHIFGGNNPES 465 AC+S +DCSLNG CVS C+C W G C L P + SYG G N +SWGG V G +HL V E+ G CG+ TW+ SQI HA S GPF++ AV +HN S + +L+HI G E+ Sbjct: 21 ACSSDLDCSLNGRCVSSNCECSDIWTGLACDILKTSQPARIESYG-GQKNFASWGGN--VIAFGGKFHLYVAEMVGQCGLQTWTTNSQIVHATSDTIDGPFEKEDVAVAPWAHNPQIVHVPSHLRAGGGDLFVLFHIGDGTGSET 162
BLAST of mRNA_M-pyrifera_M_contig72181.17173.1 vs. uniprot
Match: A0A8J1UU93_OWEFU (Ofus.G1949 protein n=2 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UU93_OWEFU) HSP 1 Score: 94.7 bits (234), Expect = 8.250e-20 Identity = 55/154 (35.71%), Postives = 76/154 (49.35%), Query Frame = 1 Query: 55 CTSSMDCSLNGECVSGVCKCDRPWNGSTCGELDV---DPTPVISYGHGTGNVSSWGGGPPVRWT-DGAYHLLVTEIAGGCGMCTWSRMSQIAHAVSPNPQGPFKRVGTAVPTQSHNA------------YYAFSASDNTHLLYHIFGGNNPESC 468 C S+MDCSLNGEC++G+CKCD+ W C EL++ D SSWGG P +R DG YH+ E+ CG+ +W+ S+I HAVS P G +KR+ P +H Y++ N L + G+ P SC Sbjct: 117 CRSNMDCSLNGECLNGMCKCDQAWMLHNCDELNLLKADKNTGYKQMDDGEPTSSWGG-PVIRDPIDGTYHMFPAEMTRHCGINSWTVNSRIVHAVSETPLGKYKRIEEQQPPFAHEPDVINGPRGEAIMYWSAMEHKNNDTLCNCSDGSTPPSC 269
BLAST of mRNA_M-pyrifera_M_contig72181.17173.1 vs. uniprot
Match: A0A8J1UPF6_OWEFU (Ofus.G1942 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UPF6_OWEFU) HSP 1 Score: 91.7 bits (226), Expect = 5.440e-19 Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 1 Query: 55 CTSSMDCSLNGECVSGVCKCDRPWNGSTCGELDV---DPTPVISYGHGTGNVSSWGGGPPVRW-TDGAYHLLVTEIAGGCGMCTWSRMSQIAHAVSPNPQGPFKRVGTAVPTQSHNA------------YYAFSASDNTHLLYHIFGGNNPESC 468 C S+MDCSLNGEC+ G+CKCD W C EL++ D SSWGG P +R DG YH+ E+ CG+ +W+ S+I HAVS P G +KR+ P +H Y++ + L + G+ P SC Sbjct: 15 CRSNMDCSLNGECLDGMCKCDPAWMLHNCDELNLLKADKNTGYKQMDDGEPTSSWGG-PVIRDPVDGTYHMFPAEMTRHCGINSWTVNSRIVHAVSETPLGKYKRIEEQQPPFAHEPDVINGPRGEAIMYWSAMEHKSNDTLCNCSDGSTPPSC 167
BLAST of mRNA_M-pyrifera_M_contig72181.17173.1 vs. uniprot
Match: A0A8J1UUX9_OWEFU (Ofus.G19818 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1UUX9_OWEFU) HSP 1 Score: 90.5 bits (223), Expect = 1.520e-18 Identity = 56/155 (36.13%), Postives = 74/155 (47.74%), Query Frame = 1 Query: 55 CTSSMDCSLNGECVSGVCKCDRPWNGSTCGELDVDP----TPVISYGHGTGNVSSWGGGPPVRW-TDGAYHLLVTEIAGGCGMCTWSRMSQIAHAVSPNPQGPFKRVGTAVPTQSHNA------------YYAFSASDNTHLLYHIFGGNNPESC 468 C S+MDCSLNGEC+ G+CKCD W C L++ P T G SSWGG P VR DG YH+ E+ CG+ +W S+I HA+S P G +KR+ P +H Y++ N L + G+ P SC Sbjct: 23 CRSNMDCSLNGECLDGMCKCDPAWMLHNCDVLNLLPANKNTGYKQMDDGA-PTSSWGG-PVVRDPVDGTYHMFPAEMTRHCGINSWIVNSRIVHAMSETPTGKYKRIEEQQPPFAHEPDVINGPRGEAIMYWSAMKHKNNDTLCNCSDGSTPPSC 175
BLAST of mRNA_M-pyrifera_M_contig72181.17173.1 vs. uniprot
Match: A0A348XGI3_9BACT (Uncharacterized protein n=1 Tax=Lentisphaeria bacterium TaxID=2053569 RepID=A0A348XGI3_9BACT) HSP 1 Score: 53.9 bits (128), Expect = 1.500e-5 Identity = 27/79 (34.18%), Postives = 40/79 (50.63%), Query Frame = 1 Query: 226 VRWTDGAYHLLVTEIAGGCGMCTWSRMSQIAHAVSPNPQGPFKRVGTAVPTQSHNAYYAFSA-------SDNTHLLYHI 441 ++WTDG YH G W R S+IAHAVS +P+GPF GT + + ++ + +A +D LY+I Sbjct: 41 IQWTDGKYHAYYARWPEKRGFHGWLRYSEIAHAVSDHPEGPFVTTGTVIKNRHNDGWDVVNAHNPSVCVADGKIALYYI 119 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72181.17173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig72181.17173.1 >prot_M-pyrifera_M_contig72181.17173.1 ID=prot_M-pyrifera_M_contig72181.17173.1|Name=mRNA_M-pyrifera_M_contig72181.17173.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=154bp MRISCLFLLLPGAVLACTSSMDCSLNGECVSGVCKCDRPWNGSTCGELDVback to top mRNA from alignment at M-pyrifera_M_contig72181:149..616- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig72181.17173.1 ID=mRNA_M-pyrifera_M_contig72181.17173.1|Name=mRNA_M-pyrifera_M_contig72181.17173.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=468bp|location=Sequence derived from alignment at M-pyrifera_M_contig72181:149..616- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig72181:149..616- >mRNA_M-pyrifera_M_contig72181.17173.1 ID=mRNA_M-pyrifera_M_contig72181.17173.1|Name=mRNA_M-pyrifera_M_contig72181.17173.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=924bp|location=Sequence derived from alignment at M-pyrifera_M_contig72181:149..616- (Macrocystis pyrifera P11B4 male)back to top |