mRNA_M-pyrifera_M_contig72180.17172.1 (mRNA) Macrocystis pyrifera P11B4 male
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig72180.17172.1 vs. uniprot
Match: A0A3D4UP97_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UP97_9BACT) HSP 1 Score: 426 bits (1095), Expect = 4.100e-147 Identity = 235/316 (74.37%), Postives = 267/316 (84.49%), Query Frame = 1 Query: 10 PTHAYVIEGSAYFGAPGIELATVGRVLLSDPSDVTLFAQGAVDLRFGGGDIRPGTNDLVAFENTTNALRLLDLDAGGNTLLDSIGFMDSGVAGMSYSNDGSIVYVTTTVGAFVRILEVDADTSTVIDMHNIITNAISSLAVVPEGHPTLTPGDLYGLALSGFGSLRLVQIDLDSNLIVSDQLVSGFGFEPQFETGLDFAADGTLYGIIQGYDEVSPDVFVEISSHLYTINPATGSASEIGVIEADGTWDAVTLVVDDSAAPCAADFTGEGTLDIFDVLGFIEAFNAMDAXXXXXXXXXXXXXXXXXXXXXXXAGCP 957 PT AY+IEGSAYFGAPGIEL VGRV LSDPS V + +DLRFGG D+RPGT +LVAFENTTNA+R+LD GGN L+DSIGFMDSGVAGMSYSNDGS+ YVTTTVGAFVRIL VDADT ++ M+NIIT+AISSLAVVPEGHPTL PGDLYGLAL+ GS+RLV+IDL +N I S Q VSG GF PQFETGLDFA+DGTLY +IQGYDEVSPDVFVEISSHLYTI+PA+G+A+++GV++ADGTWDAVTLV+D+ A C AD TG+G L+ FDV F+ AF A D XXXXXXXXXXXXXXXXXXXX AGCP Sbjct: 22 PTSAYIIEGSAYFGAPGIELTQVGRVDLSDPSVVDILPTAGIDLRFGGADLRPGTGELVAFENTTNAMRILDTINGGNALIDSIGFMDSGVAGMSYSNDGSLAYVTTTVGAFVRILTVDADTGAMVAMNNIITDAISSLAVVPEGHPTLNPGDLYGLALTAGGSVRLVRIDLKANTIASTQFVSGVGFSPQFETGLDFASDGTLYALIQGYDEVSPDVFVEISSHLYTIDPASGAATDLGVVQADGTWDAVTLVIDEGQAQCPADLTGDGELNFFDVSAFLNAFAANDPIAXXXXXXXXXXXXXXXXXXXXNAGCP 337
BLAST of mRNA_M-pyrifera_M_contig72180.17172.1 vs. uniprot
Match: A0A2A4RGV9_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A2A4RGV9_9BACT) HSP 1 Score: 392 bits (1008), Expect = 7.810e-134 Identity = 200/285 (70.18%), Postives = 227/285 (79.65%), Query Frame = 1 Query: 19 AYVIEGSAYFGAPGIELATVGRVLLSDPSDVTLFAQGAVDLRFGGGDIRPGTNDLVAFENTTNALRLLDLDAGGNTLLDSIGFMDSGVAGMSYSNDGSIVYVTTTVGAFVRILEVDADTSTVIDMHNIITNAISSLAVVPEGHPTLTPGDLYGLALSGFGSLRLVQIDLDSNLIVSDQLVSGFGFEPQFETGLDFAADGTLYGIIQGYDEVSPDVFVEISSHLYTINPATGSASEIGVIEADGTWDAVTLVVDDSAAPCAADFTGEGTLDIFDVLGFIEAFNAMD 873 AY+IEGS +FGAPGIEL VG V L+DPS VT A A DLRFGG DIRPGT +LVAFENTTNALR LDL GGNTL+DSIG+M+SGVAGM+YSNDGS+VYVTTTVGAF+RILEVDADT V+++HNI+ SSLAVVPEGHP L GDLYGL S GSLRLV DLD+N +VS Q + G GF P+FETGLDFA DGTLY +IQG+DEV+PD FVEISSHLYTI+P GS ++GVIE D TWDAVTLVVDD A C AD G+GTL+ FDV F+ AF A D Sbjct: 29 AYIIEGSGFFGAPGIELGRVGLVDLADPSVVTSVALAATDLRFGGADIRPGTTELVAFENTTNALRTLDLINGGNTLIDSIGYMESGVAGMAYSNDGSVVYVTTTVGAFLRILEVDADTGAVLEVHNILNFVXSSLAVVPEGHPXLXAGDLYGLXXSFGGSLRLVXXDLDTNTVVSQQSLFGIGFTPEFETGLDFAPDGTLYAVIQGFDEVTPDNFVEISSHLYTIDPLVGSVVDLGVIEGDQTWDAVTLVVDDGVAGCLADLNGDGTLNFFDVSAFLNAFAAGD 313
BLAST of mRNA_M-pyrifera_M_contig72180.17172.1 vs. uniprot
Match: A0A3M2CLN7_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2CLN7_9BACT) HSP 1 Score: 342 bits (877), Expect = 6.970e-114 Identity = 166/290 (57.24%), Postives = 221/290 (76.21%), Query Frame = 1 Query: 10 PTHAYVIEGSAYFGAPGIELATVGRVLLSDPSDVTLFAQGAVDLRFGGGDIRPGTNDLVAFENTTNALRLLDLDAGGNTLLDSIGFMDSGVAGMSYSNDGSIVYVTTTVGAFVRILEVDADTSTVIDMHNIITNAISSLAVVPEGHPTLTPGDLYGLALSGFGSLRLVQIDLDSNLIVSDQLVSGFGFEPQFETGLDFAADGTLYGIIQGYDEVSPDVFVEISSHLYTINPATGSASEIGVIEADGTWDAVTLVVDDSAAP-CAADFTGE-GTLDIFDVLGFIEAFNAMD 873 PT A++IEGSA+FGAPGIEL ++ V L +PS V + ++ AVDLRFGG D+RPGT +LV FEN+TN++R+L D+ TL+DSIG+M+SGVAG ++SNDG++ Y TT+V F RI+ DADT V+ +HNI+ ++SSLA VPEGHPT G+++GL L+ GSLRL ++DLD+N +++ V+G GF PQFETGLD+AADGTLY +IQG+ + PD FVEISS LYTINPATG+A+ +G++EAD TWDAVTL +DD P C AD GTL+IFD+ +I +NA D Sbjct: 28 PTRAFIIEGSAFFGAPGIELGSLAAVNLLNPSQVEVLSRPAVDLRFGGADVRPGTGELVGFENSTNSIRILSTDSDEQTLIDSIGWMESGVAGFTFSNDGAVAYATTSVSGFGRIVRADADTGAVLGVHNILNVSLSSLATVPEGHPTYPAGEIWGLGLTAGGSLRLYRLDLDTNSVLAQPPVTGIGFNPQFETGLDWAADGTLYALIQGFQQTGPDQFVEISSRLYTINPATGAATLVGIVEADATWDAVTLALDDQGEPPCPADLAEPFGTLNIFDIQAYIGLYNAQD 317
BLAST of mRNA_M-pyrifera_M_contig72180.17172.1 vs. uniprot
Match: A0A812Y7W5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812Y7W5_9DINO) HSP 1 Score: 347 bits (890), Expect = 3.900e-105 Identity = 178/289 (61.59%), Postives = 221/289 (76.47%), Query Frame = 1 Query: 13 THAYVIEGSAYFGAPGIELATVGRVLLSDPSDVTLFAQGAVDLRFGGGDIRPGTNDLVAFENTTNALRLLDLDAGGNTLLDSIGFMDSGVAGMSYSNDGSIVYVTTTVGAFVRILEVDADTSTVIDMHNIIT-NAISSLAVVPEGHPTLTPGDLYGLALSGFGSLRLVQIDLDSNLIVSDQLVSGFGFEPQFETGLDFAADGTLYGIIQGYDEVSPDVFVEISSHLYTINPATGSASEIGVIEADGTWDAVTLVVDDSA-APCAADFTGEGTLDIFDVLGFIEAFNAMD 873 THAY+IEGS +FGAPGIELA VGRV LSDPSDV LRFGGGD+ + +++ FENTTNALR +D+ +GGNTL+DSIGF+DSGVAGM+ +NDGS V TVGAF R + DA+T V +HNI+ +AI S+AVVPEGHP+L PGDLYGLAL+ GS+RLV+IDL +N I + + G GF QFETGLDFA+DGTLYG+IQG+DE++PD FVEISSHLYTI+ TG+ + +GV+EADGTWDAVTLV+D++ C AD TGEG L+ DV F+ A+ MD Sbjct: 1153 THAYIIEGSGFFGAPGIELAQVGRVNLSDPSDVVRTPMAGDLLRFGGGDMN-ASGEVIGFENTTNALRTVDVKSGGNTLIDSIGFIDSGVAGMTLTNDGSTAIVVGTVGAFSRFVLADAETGAVQSVHNILNFDAIGSIAVVPEGHPSLMPGDLYGLALTSGGSVRLVRIDLGANTITTVHTLFGVGFSAQFETGLDFASDGTLYGMIQGFDEIAPDQFVEISSHLYTIDTTTGALNLLGVVEADGTWDAVTLVIDEAPDTSCPADLTGEGDLNFLDVSAFLAAYGKMD 1440 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig72180.17172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig72180.17172.1 >prot_M-pyrifera_M_contig72180.17172.1 ID=prot_M-pyrifera_M_contig72180.17172.1|Name=mRNA_M-pyrifera_M_contig72180.17172.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=320bp APSPTHAYVIEGSAYFGAPGIELATVGRVLLSDPSDVTLFAQGAVDLRFGback to top mRNA from alignment at M-pyrifera_M_contig72180:23..982+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig72180.17172.1 ID=mRNA_M-pyrifera_M_contig72180.17172.1|Name=mRNA_M-pyrifera_M_contig72180.17172.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig72180:23..982+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig72180:23..982+ >mRNA_M-pyrifera_M_contig72180.17172.1 ID=mRNA_M-pyrifera_M_contig72180.17172.1|Name=mRNA_M-pyrifera_M_contig72180.17172.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1920bp|location=Sequence derived from alignment at M-pyrifera_M_contig72180:23..982+ (Macrocystis pyrifera P11B4 male)back to top |