Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Bacteria |
Seed ortholog score | 85.5 |
Seed ortholog evalue | 5.3e-14 |
Seed eggNOG ortholog | 1210884.HG799462_gene8300 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | unidirectional conjugation |
EggNOG OGs | COG3505@1,COG3505@2 |
COG Functional cat. | U |
Best tax level | Bacteria |
Best eggNOG OG | NA|NA|NA |
Exons | 1 |
Model size | 1035 |
Cds size | 1035 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816615.0976367-CDS-M-pyrifera_M_contig71937:42..1077 | 1622816615.0976367-CDS-M-pyrifera_M_contig71937:42..1077 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig71937 43..1077 - |
1692278078.7338853-CDS-M-pyrifera_M_contig71937:42..1077 | 1692278078.7338853-CDS-M-pyrifera_M_contig71937:42..1077 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig71937 43..1077 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig71937.17133.1 >prot_M-pyrifera_M_contig71937.17133.1 ID=prot_M-pyrifera_M_contig71937.17133.1|Name=mRNA_M-pyrifera_M_contig71937.17133.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=345bp
VLLAEELRVNGLWLLGAMRSGKTALATSLGVQLARRNHGPLILVDLKGDD ETMQTYRWEADRLGRPFQLFSTVPEHPTHLFNVLGQRHLDGLTPSEIAQL IMLSADLDHGSGHGPSFFRGQSWTGLSEGLVAETGRGWRPSQTRERVQSF VELSRRLPEVAKARKELKHLEALTVVVNQLCQVATLNGIRGLKWFPEEAM RESIQIRNLFFPNAEGKYPIVYLYLRAESDPIVAPMIARLFLNLTKNGLR QFTDARKQGRVQAPPVLVDVIIDEAAYVLDRSLRNLIDQGASMGFRMILA NQDISQIAGDDPNFARTLFENIGNKVLFTCRDATWQDTLMKLSGE back to topmRNA from alignment at M-pyrifera_M_contig71937:43..1077- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig71937.17133.1 ID=mRNA_M-pyrifera_M_contig71937.17133.1|Name=mRNA_M-pyrifera_M_contig71937.17133.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at M-pyrifera_M_contig71937:43..1077- (Macrocystis pyrifera P11B4 male) GTCCTGCTCGCTGAGGAACTCCGCGTCAACGGCCTGTGGCTGTTGGGAGC
CATGCGGTCCGGCAAGACAGCCTTAGCGACGAGTCTGGGCGTGCAGTTGG
CCCGCCGCAATCACGGGCCTCTGATCCTCGTCGATCTTAAAGGGGACGAC
GAAACCATGCAGACCTACCGGTGGGAGGCCGACCGGCTCGGCCGACCGTT
TCAGTTATTCAGCACTGTCCCCGAACATCCGACACACCTCTTCAATGTGC
TCGGCCAACGTCACCTCGACGGACTGACTCCATCCGAGATCGCACAACTC
ATCATGCTCTCGGCCGATCTCGATCACGGCTCGGGACATGGTCCAAGTTT
CTTTCGTGGACAGTCCTGGACGGGACTCTCGGAAGGACTGGTCGCCGAGA
CGGGTCGTGGCTGGAGACCTTCCCAGACGCGGGAGCGGGTTCAGAGCTTC
GTCGAACTGAGCCGACGCCTGCCCGAAGTCGCTAAAGCTCGCAAGGAACT
CAAACATCTGGAAGCGTTGACAGTCGTTGTGAATCAACTCTGTCAGGTGG
CCACCTTGAACGGTATACGCGGACTGAAGTGGTTTCCCGAAGAGGCGATG
CGAGAGTCCATACAGATCAGAAATCTGTTCTTCCCGAATGCCGAGGGAAA
GTACCCCATCGTCTACCTCTATCTGCGGGCCGAGTCGGATCCGATCGTGG
CACCGATGATTGCCCGCCTGTTCCTCAATCTGACGAAGAACGGACTGCGA
CAGTTTACGGACGCTCGCAAACAGGGTCGTGTGCAGGCTCCGCCGGTACT
CGTGGACGTAATCATCGACGAGGCAGCGTATGTCCTGGACCGGTCGCTTC
GCAATTTGATCGACCAGGGAGCCTCCATGGGCTTTCGGATGATTCTGGCG
AATCAGGACATCAGCCAGATTGCTGGCGATGATCCGAACTTCGCCCGGAC
GCTGTTTGAGAACATTGGCAACAAAGTCCTCTTCACCTGCCGTGACGCCA
CCTGGCAGGACACGCTGATGAAGCTCTCTGGGGAG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig71937:43..1077- >mRNA_M-pyrifera_M_contig71937.17133.1 ID=mRNA_M-pyrifera_M_contig71937.17133.1|Name=mRNA_M-pyrifera_M_contig71937.17133.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2070bp|location=Sequence derived from alignment at M-pyrifera_M_contig71937:43..1077- (Macrocystis pyrifera P11B4 male) GTCCTGCTCGCTGAGGAACTCCGCGTCAACGGCCTGTGGCTGTTGGGAGC CATGCGGTCCGGCAAGACAGCCTTAGCGACGAGTCTGGGCGTGCAGTTGG CCCGCCGCAATCACGGGCCTCTGATCCTCGTCGATCTTAAAGGGGACGAC GAAACCATGCAGACCTACCGGTGGGAGGCCGACCGGCTCGGCCGACCGTT TCAGTTATTCAGCACTGTCCCCGAACATCCGACACACCTCTTCAATGTGC TCGGCCAACGTCACCTCGACGGACTGACTCCATCCGAGATCGCACAACTC ATCATGCTCTCGGCCGATCTCGATCACGGCTCGGGACATGGTCCAAGTTT CTTTCGTGGACAGTCCTGGACGGGACTCTCGGAAGGACTGGTCGCCGAGA CGGGTCGTGGCTGGAGACCTTCCCAGACGCGGGAGCGGGTTCAGAGCTTC GTCGAACTGAGCCGACGCCTGCCCGAAGTCGCTAAAGCTCGCAAGGAACT CAAACATCTGGAAGCGTTGACAGTCGTTGTGAATCAACTCTGTCAGGTGG CCACCTTGAACGGTATACGCGGACTGAAGTGGTTTCCCGAAGAGGCGATG CGAGAGTCCATACAGATCAGAAATCTGTTCTTCCCGAATGCCGAGGGAAA GTACCCCATCGTCTACCTCTATCTGCGGGCCGAGTCGGATCCGATCGTGG CACCGATGATTGCCCGCCTGTTCCTCAATCTGACGAAGAACGGACTGCGA CAGTTTACGGACGCTCGCAAACAGGGTCGTGTGCAGGCTCCGCCGGTACT CGTGGACGTAATCATCGACGAGGCAGCGTATGTCCTGGACCGGTCGCTTC GCAATTTGATCGACCAGGGAGCCTCCATGGGCTTTCGGATGATTCTGGCG AATCAGGACATCAGCCAGATTGCTGGCGATGATCCGAACTTCGCCCGGAC GCTGTTTGAGAACATTGGCAACAAAGTCCTCTTCACCTGCCGTGACGCCA CCTGGCAGGACACGCTGATGAAGCTCTCTGGGGAGGTCCTGCTCGCTGAG GAACTCCGCGTCAACGGCCTGTGGCTGTTGGGAGCCATGCGGTCCGGCAA GACAGCCTTAGCGACGAGTCTGGGCGTGCAGTTGGCCCGCCGCAATCACG GGCCTCTGATCCTCGTCGATCTTAAAGGGGACGACGAAACCATGCAGACC TACCGGTGGGAGGCCGACCGGCTCGGCCGACCGTTTCAGTTATTCAGCAC TGTCCCCGAACATCCGACACACCTCTTCAATGTGCTCGGCCAACGTCACC TCGACGGACTGACTCCATCCGAGATCGCACAACTCATCATGCTCTCGGCC GATCTCGATCACGGCTCGGGACATGGTCCAAGTTTCTTTCGTGGACAGTC CTGGACGGGACTCTCGGAAGGACTGGTCGCCGAGACGGGTCGTGGCTGGA GACCTTCCCAGACGCGGGAGCGGGTTCAGAGCTTCGTCGAACTGAGCCGA CGCCTGCCCGAAGTCGCTAAAGCTCGCAAGGAACTCAAACATCTGGAAGC GTTGACAGTCGTTGTGAATCAACTCTGTCAGGTGGCCACCTTGAACGGTA TACGCGGACTGAAGTGGTTTCCCGAAGAGGCGATGCGAGAGTCCATACAG ATCAGAAATCTGTTCTTCCCGAATGCCGAGGGAAAGTACCCCATCGTCTA CCTCTATCTGCGGGCCGAGTCGGATCCGATCGTGGCACCGATGATTGCCC GCCTGTTCCTCAATCTGACGAAGAACGGACTGCGACAGTTTACGGACGCT CGCAAACAGGGTCGTGTGCAGGCTCCGCCGGTACTCGTGGACGTAATCAT CGACGAGGCAGCGTATGTCCTGGACCGGTCGCTTCGCAATTTGATCGACC AGGGAGCCTCCATGGGCTTTCGGATGATTCTGGCGAATCAGGACATCAGC CAGATTGCTGGCGATGATCCGAACTTCGCCCGGACGCTGTTTGAGAACAT TGGCAACAAAGTCCTCTTCACCTGCCGTGACGCCACCTGGCAGGACACGC TGATGAAGCTCTCTGGGGAG back to top
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