mRNA_M-pyrifera_M_contig71891.17121.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71891.17121.1
Unique NamemRNA_M-pyrifera_M_contig71891.17121.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71891.17121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71891contigM-pyrifera_M_contig71891:471..1139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size669
Cds size645
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.4681199-UTR-M-pyrifera_M_contig71891:470..4941622816614.4681199-UTR-M-pyrifera_M_contig71891:470..494Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71891 471..494 +
1692278078.3754926-UTR-M-pyrifera_M_contig71891:470..4941692278078.3754926-UTR-M-pyrifera_M_contig71891:470..494Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig71891 471..494 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816614.4812202-CDS-M-pyrifera_M_contig71891:494..11391622816614.4812202-CDS-M-pyrifera_M_contig71891:494..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71891 495..1139 +
1692278078.388924-CDS-M-pyrifera_M_contig71891:494..11391692278078.388924-CDS-M-pyrifera_M_contig71891:494..1139Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71891 495..1139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71891.17121.1prot_M-pyrifera_M_contig71891.17121.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71891 495..1139 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71891.17121.1

>prot_M-pyrifera_M_contig71891.17121.1 ID=prot_M-pyrifera_M_contig71891.17121.1|Name=mRNA_M-pyrifera_M_contig71891.17121.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=215bp
MVQLYDDGGEESGKYVWKRISAAGLSMSKVYGLYREAAFYAEAVDEVRKS
GVGVAHCLNAYGDGGSGEKELLVEFFGKKWIQCGYLFGEGSPLNKGKDLA
AECAKVPLLNAERVTSNAFTHLARFHSTPIKPEWRRWLRGAMWGEDVGRE
GWEKAYEEVVRMFESGKGEREWWSKEVLEVVEDVVVSTTWEKSKRRMEEA
EVGLAHGDFHPGNCL
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mRNA from alignment at M-pyrifera_M_contig71891:471..1139+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71891.17121.1 ID=mRNA_M-pyrifera_M_contig71891.17121.1|Name=mRNA_M-pyrifera_M_contig71891.17121.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=669bp|location=Sequence derived from alignment at M-pyrifera_M_contig71891:471..1139+ (Macrocystis pyrifera P11B4 male)
GGAGGGTACGTTGGGGAGGTACGGATGGTGCAATTGTACGATGATGGTGG
AGAGGAATCTGGGAAATATGTATGGAAAAGGATCTCGGCAGCCGGCTTGT
CAATGTCCAAGGTGTATGGATTGTATCGAGAAGCTGCATTTTATGCAGAG
GCAGTCGATGAGGTGAGGAAGAGTGGGGTTGGAGTAGCTCATTGTTTGAA
TGCGTATGGGGACGGTGGGAGTGGAGAGAAAGAATTGCTTGTCGAGTTCT
TTGGGAAGAAGTGGATACAATGTGGTTACTTGTTTGGTGAAGGTAGCCCG
CTAAACAAAGGTAAAGATTTAGCAGCAGAATGTGCCAAAGTACCATTACT
GAACGCAGAACGCGTGACGTCAAACGCATTCACTCACCTTGCTCGTTTCC
ATTCCACTCCCATCAAGCCAGAGTGGCGTCGTTGGCTGCGTGGCGCAATG
TGGGGTGAGGATGTGGGTAGAGAGGGGTGGGAGAAGGCGTATGAGGAGGT
GGTGAGGATGTTTGAGAGTGGGAAGGGGGAAAGGGAGTGGTGGAGTAAGG
AAGTGTTGGAAGTGGTGGAAGATGTGGTGGTGAGCACAACGTGGGAAAAA
TCAAAGCGGAGGATGGAGGAGGCAGAGGTGGGATTGGCGCACGGAGATTT
CCACCCTGGGAATTGTTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71891:471..1139+

>mRNA_M-pyrifera_M_contig71891.17121.1 ID=mRNA_M-pyrifera_M_contig71891.17121.1|Name=mRNA_M-pyrifera_M_contig71891.17121.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1290bp|location=Sequence derived from alignment at M-pyrifera_M_contig71891:471..1139+ (Macrocystis pyrifera P11B4 male)
ATGGTGCAATTGTACGATGATGGTGGAGAGGAATCTGGGAAATATGTATG
GAAAAGGATCTCGGCAGCCGGCTTGTCAATGTCCAAGGTGTATGGATTGT
ATCGAGAAGCTGCATTTTATGCAGAGGCAGTCGATGAGGTGAGGAAGAGT
GGGGTTGGAGTAGCTCATTGTTTGAATGCGTATGGGGACGGTGGGAGTGG
AGAGAAAGAATTGCTTGTCGAGTTCTTTGGGAAGAAGTGGATACAATGTG
GTTACTTGTTTGGTGAAGGTAGCCCGCTAAACAAAGGTAAAGATTTAGCA
GCAGAATGTGCCAAAGTACCATTACTGAACGCAGAACGCGTGACGTCAAA
CGCATTCACTCACCTTGCTCGTTTCCATTCCACTCCCATCAAGCCAGAGT
GGCGTCGTTGGCTGCGTGGCGCAATGTGGGGTGAGGATGTGGGTAGAGAG
GGGTGGGAGAAGGCGTATGAGGAGGTGGTGAGGATGTTTGAGAGTGGGAA
GGGGGAAAGGGAGTGGTGGAGTAAGGAAGTGTTGGAAGTGGTGGAAGATG
TGGTGGTGAGCACAACGTGGGAAAAATCAAAGCGGAGGATGGAGGAGGCA
GAGGTGGGATTGGCGCACGGAGATTTCCACCCTGGGAATTGTTTGATGGT
GCAATTGTACGATGATGGTGGAGAGGAATCTGGGAAATATGTATGGAAAA
GGATCTCGGCAGCCGGCTTGTCAATGTCCAAGGTGTATGGATTGTATCGA
GAAGCTGCATTTTATGCAGAGGCAGTCGATGAGGTGAGGAAGAGTGGGGT
TGGAGTAGCTCATTGTTTGAATGCGTATGGGGACGGTGGGAGTGGAGAGA
AAGAATTGCTTGTCGAGTTCTTTGGGAAGAAGTGGATACAATGTGGTTAC
TTGTTTGGTGAAGGTAGCCCGCTAAACAAAGGTAAAGATTTAGCAGCAGA
ATGTGCCAAAGTACCATTACTGAACGCAGAACGCGTGACGTCAAACGCAT
TCACTCACCTTGCTCGTTTCCATTCCACTCCCATCAAGCCAGAGTGGCGT
CGTTGGCTGCGTGGCGCAATGTGGGGTGAGGATGTGGGTAGAGAGGGGTG
GGAGAAGGCGTATGAGGAGGTGGTGAGGATGTTTGAGAGTGGGAAGGGGG
AAAGGGAGTGGTGGAGTAAGGAAGTGTTGGAAGTGGTGGAAGATGTGGTG
GTGAGCACAACGTGGGAAAAATCAAAGCGGAGGATGGAGGAGGCAGAGGT
GGGATTGGCGCACGGAGATTTCCACCCTGGGAATTGTTTG
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