mRNA_M-pyrifera_M_contig7174.17090.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7174.17090.1
Unique NamemRNA_M-pyrifera_M_contig7174.17090.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7174.17090.1 vs. uniprot
Match: D7G6W1_ECTSI (Spindle pole body component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6W1_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 8.110e-14
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:    6 GRDPFGMASIDDTARRYEEALSELVRLLEEKSGKTEILRFLTFRLDFND 152
            GRDPFGM +I+DTARR+EE LSEL  +LE+K GK EILRFL FRLDFN+
Sbjct:  834 GRDPFGMGNIEDTARRFEEKLSELRCMLEQKCGKMEILRFLIFRLDFNE 882
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BLAST of mRNA_M-pyrifera_M_contig7174.17090.1 vs. uniprot
Match: A0A835YR49_9STRA (Spindle pole body component n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR49_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.560e-8
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 3 
Query:    3 AGRDPFGMASIDDTARRYEEALSELVRLLEEKSGKTEILRFLTFRLDFNDYYKERRAAVVSPLPPRQDGG 212
            AG     +A + +T RRYE A SEL+ +LE +S ++EILR L FRLDFN Y+  RRAA   P P     G
Sbjct:  975 AGVQERTLAHLAETGRRYERAFSELLVMLETESVRSEILRHLVFRLDFNLYHS-RRAAAQPPAPSHAKAG 1043
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BLAST of mRNA_M-pyrifera_M_contig7174.17090.1 vs. uniprot
Match: A0A7S3H0B4_9STRA (Spindle pole body component n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H0B4_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.660e-7
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:   18 FGMASIDDTARRYEEALSELVRLLEEKSGKTEILRFLTFRLDFNDYYKERRAAVVS 185
            + ++ ID+  + Y     +L+ +L+E+S KTE LRFLTFRLDFNDY+  +RA   S
Sbjct:   87 YVVSRIDEAVKEYSTQFEKLMFMLKEQSEKTEYLRFLTFRLDFNDYHAHQRAQGAS 142
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7174.17090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6W1_ECTSI8.110e-1473.47Spindle pole body component n=2 Tax=Ectocarpus Tax... [more]
A0A835YR49_9STRA1.560e-848.57Spindle pole body component n=1 Tax=Tribonema minu... [more]
A0A7S3H0B4_9STRA1.660e-746.43Spindle pole body component n=1 Tax=Spumella elong... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7174contigM-pyrifera_M_contig7174:1329..4059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog2880.D7G6W1
Preferred nameTUBGCP3
KEGG koko:K16570
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000922,GO:0000923,GO:0000928,GO:0000930,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005824,GO:0005825,GO:0005827,GO:0005829,GO:0005856,GO:0005874,GO:0005875,GO:0005876,GO:0005881,GO:0005886,GO:0005938,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0007098,GO:0007140,GO:0007163,GO:0007276,GO:0007338,GO:0008017,GO:0008092,GO:0008150,GO:0008275,GO:0008360,GO:0009566,GO:0009605,GO:0009607,GO:0009624,GO:0009898,GO:0009987,GO:0010638,GO:0010968,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030863,GO:0030981,GO:0031023,GO:0031109,GO:0031110,GO:0031112,GO:0031113,GO:0031116,GO:0031122,GO:0031334,GO:0031967,GO:0031975,GO:0032153,GO:0032155,GO:0032271,GO:0032273,GO:0032501,GO:0032504,GO:0032886,GO:0032991,GO:0033043,GO:0034622,GO:0043015,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044450,GO:0044459,GO:0044464,GO:0044703,GO:0044732,GO:0046785,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051225,GO:0051258,GO:0051298,GO:0051321,GO:0051415,GO:0051418,GO:0051493,GO:0051495,GO:0051704,GO:0051707,GO:0055028,GO:0061496,GO:0061497,GO:0065003,GO:0065007,GO:0065008,GO:0070507,GO:0070925,GO:0071840,GO:0071944,GO:0071957,GO:0071963,GO:0090063,GO:0090307,GO:0097435,GO:0098552,GO:0098562,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0140013,GO:0140014,GO:1902850,GO:1902903,GO:1902905,GO:1903046,GO:1903047
EggNOG free text desc.microtubule nucleation by interphase microtubule organizing center
EggNOG OGsKOG2000@1,KOG2000@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04147,ko04812
Exons3
Model size273
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7174.17090.1prot_M-pyrifera_M_contig7174.17090.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7174 1352..4031 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816612.753956-UTR-M-pyrifera_M_contig7174:1328..13511622816612.753956-UTR-M-pyrifera_M_contig7174:1328..1351Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7174 1329..1351 +
1692278077.4991648-UTR-M-pyrifera_M_contig7174:1328..13511692278077.4991648-UTR-M-pyrifera_M_contig7174:1328..1351Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7174 1329..1351 +
1622816612.8102522-UTR-M-pyrifera_M_contig7174:4031..40591622816612.8102522-UTR-M-pyrifera_M_contig7174:4031..4059Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7174 4032..4059 +
1692278077.5392535-UTR-M-pyrifera_M_contig7174:4031..40591692278077.5392535-UTR-M-pyrifera_M_contig7174:4031..4059Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig7174 4032..4059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816612.765689-CDS-M-pyrifera_M_contig7174:1351..13871622816612.765689-CDS-M-pyrifera_M_contig7174:1351..1387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7174 1352..1387 +
1692278077.5104897-CDS-M-pyrifera_M_contig7174:1351..13871692278077.5104897-CDS-M-pyrifera_M_contig7174:1351..1387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7174 1352..1387 +
1622816612.781977-CDS-M-pyrifera_M_contig7174:2300..23921622816612.781977-CDS-M-pyrifera_M_contig7174:2300..2392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7174 2301..2392 +
1692278077.5188835-CDS-M-pyrifera_M_contig7174:2300..23921692278077.5188835-CDS-M-pyrifera_M_contig7174:2300..2392Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7174 2301..2392 +
1622816612.7965667-CDS-M-pyrifera_M_contig7174:3937..40311622816612.7965667-CDS-M-pyrifera_M_contig7174:3937..4031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7174 3938..4031 +
1692278077.5286603-CDS-M-pyrifera_M_contig7174:3937..40311692278077.5286603-CDS-M-pyrifera_M_contig7174:3937..4031Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7174 3938..4031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7174.17090.1

>prot_M-pyrifera_M_contig7174.17090.1 ID=prot_M-pyrifera_M_contig7174.17090.1|Name=mRNA_M-pyrifera_M_contig7174.17090.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=74bp
MASIDDTARRYEEALSELVRLLEEKSGKTEILRFLTFRLDFNDYYKERRA
AVVSPLPPRQDGGHGQISSRSKQ*
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mRNA from alignment at M-pyrifera_M_contig7174:1329..4059+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7174.17090.1 ID=mRNA_M-pyrifera_M_contig7174.17090.1|Name=mRNA_M-pyrifera_M_contig7174.17090.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2731bp|location=Sequence derived from alignment at M-pyrifera_M_contig7174:1329..4059+ (Macrocystis pyrifera P11B4 male)
CGGCGGGACGAGATCCGTTCGGCATGGCCAGCATCGACGACACCGCTAGG
CGATACGAGGCAAGGGGGTATATATGATAACGCACGGAGCGTTAAGCCTT
GCAAGAAGCCATGCTCAGATCGCAATCTCTTTGTGAAGAGTTAATGAAGG
GGTACCTGTAGACTATGTACTAAAAGTATGTGCGAAGCGAAGATGTATGA
TATGTTGCCCCTTTGCCGCTGTCGTTTACCGTACCGTACTGTGATGGCCA
ACAGTCGTACCATGCAACTGCGACCTGGATCTTTTGTTTTTCGCGTGCGC
AACCTCCCGCCCCTAGTGGTGTTCCGCGTCCTGCCGCTCTCCTATTACGG
GAGACCATAGTAAGTAGGACCCATTGTTAGTGAAACTGGGGAAAAATGTA
GGTTTTAGTGTGTACCGTAGGTCCTATTTACTATGGGCCTCCGTAATAGC
TGAAAGTGGATTGTGTTGCCTGCAGTAGGTGTTTAAGGTGTATCGACGTC
CGCCGTCTCTACGATAACTTTGTTGATTATGATACTTTTATGCCATCATG
ATCGCGTGCTGTCTGTGATTTTGGCACTTTTGTGAACGGCAGTTCCATGC
ATGCCGTGGCGAATACCATGGGCTACTTACACATGGCCAAGGATTTTCAG
TTCGCCCACCCACTCCGTGTTTAGGCCTGTTACCTGGTACAGAGTAGACC
GATAAATGGACAACCAATACTTTTTTTTTCACTGAAATTAAGTAGTTTCA
CGCGTATCCGGCGAACAGTATCATACGTAGGCGTTTTTTCGGGGAAGGCA
CCCACCCCTGCACGTCCCGTCCATTTGGCCCATGAACGAAACGCTCATCT
ATTTAACCAGGCCATTCGCCTAGAACTTGGAACAAGCCATCGTGGTGTGC
TCTGGAAAATCATCGCCCGATATGTTCCTGTGCTCCTGCGTTGTGCCTGT
TTGGCGCTGTGATACAATATAGGAGGCTTTGTCGGAGCTGGTGCGGTTGC
TGGAAGAGAAGAGCGGGAAGACGGAGATACTTCGGTTCCTCACCTTCCGG
CTGGACTTCAACGAGTGAGACACACACCATTCATCATTAACGATTCACTT
TTTATGTGTCGTGATGCATTCTACATTCTACATTATACTACATGTCCCTG
ACGGCGAACCAATAGACTACTTACTGAACACTTCTGCTGTGCGTCGGTAC
CAACGTAGCTATCGAGCTATCTTCACTATGCTTTTAATTTAGAATTGCAC
ACACGCTTCGAGGTCCAAGCAACATGGAAGTACTGTAGAGGCGTCTGTTT
TTTGCACTATGTGAAGGGGCGACGTCGACCGAAAAAAGTTGGCCGACCTA
CAGCGGTCACCGAACTTTTCAGGGCCCTTCGCGGGTCATGGCCAGAGCCG
CGAGTCGGGTCAGGAAGTGTTTGAAACCACACGCGTCGGGTCGGATCGGG
TCGGATCAGGAGGTTTTCAAACTTTAACGGATCGGGTCGGGTCACCCATA
TCCGACCCGACCCGGCCCGACCCGACCTGACCTGACCTGACCCTCGAGGT
TTGGCCCTAGTCGTGAATAGGCTTTGAAATTTCCGTGTGTAAATATGAAA
GCACATAGACAGACTAAAAAAATGTCGCCAGTGATCACTCGTCAACAGCT
GGAAACGCTGAGCCCCCATGCTTGAACTTTCACACTGGTGGCGCTGTTTC
GAGCTTTCGCCGATAAGCAAAGTCTCGGGCCACAATTCCTTGTCTGCCGT
GCGAAAGTTTCCGCGTGAACGTGCGGAAAGAGAGCCGCTCTGTTGCTGAA
ATATCTGGATGCTACAATATTGCACCAAGTATATAGCTGTCCCGAAAAAT
CTCATCTGACTAATGCGGTCAAGTTATTGGAGACGGTCTCCAAGTTGATG
CAAATGCCGAGAACAAGGCAGTCCTCCGGCAACATTCCCGACTTGTGTTG
CTGCGGACTTTCGTTCGGAATTTTGTTGATACCGGTATATTAATATGATT
TTGTATGTTTTTTCGCCAAGGATGCTACGCGAGGGATCGCACCTACTTCA
GTGCTCTTTCTGAAGCTTCTCACTTGATTATAGTATAGGAGCTCTATGCC
TCACCGCCAAAAGTGTATGTTCGATAAAAACGCTTGAACAACCCAATGGT
GTAGGTATGCAGGGAATGGACATGTACATGGCAACGGGAATTCCAACGAT
ACTGTTTAAATATAGTACAGAAATACTCTCTTAATAGCTACTTGTTCGAT
TAAGGATCTCCTTCAATCCCAGTGACGCGTTGGCCATAATTTGCCACTGT
TAGTACTATGACTACGGGGGAGCTTGTTAATAGTGATCACGACCCATCAA
ATATACGAAAACCTGTATATTCCAGTACTTTTGCCTACCAGGTATAAAGT
TTGATCCTGATTGCTATGCTCCCCCCGCACTACATGCTATTATTATTAAT
AGTACTATTAGTATGCATAAGAAAAGCATGCCCTCTCGTAGCACGCGTCG
AAGAGGTGGCCTGCCTATAATTCCTACCTGGTGTAATATATCCCTGCCTC
GAAGATCCCCTTTACCCACTTGAGCTCGTGCCTCCAAATCCCTTGTTGTG
CGTTCGCAGCTACTACAAGGAGCGGCGAGCGGCAGTGGTCTCACCGCTTC
CCCCTCGACAGGACGGAGGTCACGGTCAGATCTCCTCAAGGAGCAAGCAA
TAACGAGAGATAGCGGCCTGGCCCAACAAGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7174:1329..4059+

>mRNA_M-pyrifera_M_contig7174.17090.1 ID=mRNA_M-pyrifera_M_contig7174.17090.1|Name=mRNA_M-pyrifera_M_contig7174.17090.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=444bp|location=Sequence derived from alignment at M-pyrifera_M_contig7174:1329..4059+ (Macrocystis pyrifera P11B4 male)
ATGGCCAGCATCGACGACACCGCTAGGCGATACGAGATGGCCAGCATCGA
CGACACCGCTAGGCGATACGAGGAGGCTTTGTCGGAGCTGGTGCGGTTGC
TGGAAGAGAAGAGCGGGAAGACGGAGATACTTCGGTTCCTCACCTTCCGG
CTGGACTTCAACGAGAGGCTTTGTCGGAGCTGGTGCGGTTGCTGGAAGAG
AAGAGCGGGAAGACGGAGATACTTCGGTTCCTCACCTTCCGGCTGGACTT
CAACGACTACTACAAGGAGCGGCGAGCGGCAGTGGTCTCACCGCTTCCCC
CTCGACAGGACGGAGGTCACGGTCAGATCTCCTCAAGGAGCAAGCAATAA
CTACTACAAGGAGCGGCGAGCGGCAGTGGTCTCACCGCTTCCCCCTCGAC
AGGACGGAGGTCACGGTCAGATCTCCTCAAGGAGCAAGCAATAA
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