mRNA_M-pyrifera_M_contig7157.17057.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig7157.17057.1
Unique NamemRNA_M-pyrifera_M_contig7157.17057.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig7157.17057.1 vs. uniprot
Match: A0A6H5JZE4_9PHAE (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZE4_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 9.100e-9
Identity = 25/37 (67.57%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 VTPEILESLTEFFAPHNTRLQELLGRPLPDSWTTSTT 111
            VTPEIL+S+ +FFAP NT+L+ELLGRPLPD+W+  +T
Sbjct:  411 VTPEILQSMRDFFAPFNTQLEELLGRPLPDNWSKDST 447
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BLAST of mRNA_M-pyrifera_M_contig7157.17057.1 vs. uniprot
Match: D7G7A7_ECTSI (Sulfotransfer_1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A7_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.110e-8
Identity = 23/34 (67.65%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 VTPEILESLTEFFAPHNTRLQELLGRPLPDSWTT 102
            VTPE+L+S+ +FFA HN  L+ELLGRPLPD+W+T
Sbjct:  279 VTPELLQSMRDFFASHNAELEELLGRPLPDNWST 312
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7157.17057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZE4_9PHAE9.100e-967.57Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
D7G7A7_ECTSI4.110e-867.65Sulfotransfer_1 domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig7157contigM-pyrifera_M_contig7157:5375..5494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816610.8180509-CDS-M-pyrifera_M_contig7157:5374..54941622816610.8180509-CDS-M-pyrifera_M_contig7157:5374..5494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7157 5375..5494 -
1692278076.3867726-CDS-M-pyrifera_M_contig7157:5374..54941692278076.3867726-CDS-M-pyrifera_M_contig7157:5374..5494Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig7157 5375..5494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig7157.17057.1prot_M-pyrifera_M_contig7157.17057.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig7157 5375..5494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig7157.17057.1

>prot_M-pyrifera_M_contig7157.17057.1 ID=prot_M-pyrifera_M_contig7157.17057.1|Name=mRNA_M-pyrifera_M_contig7157.17057.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=40bp
VTPEILESLTEFFAPHNTRLQELLGRPLPDSWTTSTTAG*
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mRNA from alignment at M-pyrifera_M_contig7157:5375..5494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig7157.17057.1 ID=mRNA_M-pyrifera_M_contig7157.17057.1|Name=mRNA_M-pyrifera_M_contig7157.17057.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=120bp|location=Sequence derived from alignment at M-pyrifera_M_contig7157:5375..5494- (Macrocystis pyrifera P11B4 male)
GTCACGCCGGAAATACTGGAGTCGCTCACGGAATTCTTCGCTCCCCACAA
CACCCGGCTGCAGGAGCTTCTCGGTCGCCCGCTGCCGGACAGCTGGACGA
CGTCTACCACCGCCGGATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig7157:5375..5494-

>mRNA_M-pyrifera_M_contig7157.17057.1 ID=mRNA_M-pyrifera_M_contig7157.17057.1|Name=mRNA_M-pyrifera_M_contig7157.17057.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig7157:5375..5494- (Macrocystis pyrifera P11B4 male)
GTCACGCCGGAAATACTGGAGTCGCTCACGGAATTCTTCGCTCCCCACAA
CACCCGGCTGCAGGAGCTTCTCGGTCGCCCGCTGCCGGACAGCTGGACGA
CGTCTACCACCGCCGGATGAGTCACGCCGGAAATACTGGAGTCGCTCACG
GAATTCTTCGCTCCCCACAACACCCGGCTGCAGGAGCTTCTCGGTCGCCC
GCTGCCGGACAGCTGGACGACGTCTACCACCGCCGGATGA
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