mRNA_M-pyrifera_M_contig71239.16989.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71239.16989.1
Unique NamemRNA_M-pyrifera_M_contig71239.16989.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig71239.16989.1 vs. uniprot
Match: A0A1W2G6N2_9BACT (Ligand-binding sensor domain-containing protein n=2 Tax=Reichenbachiella faecimaris TaxID=692418 RepID=A0A1W2G6N2_9BACT)

HSP 1 Score: 94.0 bits (232), Expect = 4.690e-17
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:  991 EAGVSVLQSSGNDGDFTCTNMTKWDGIKRLDLALNAICLDRNNQIWWGHGKG 1146
            EAG+SV+Q+ G    +TCTNMTKWDG+KRLDLALN+ICLD  NQIWWGHGKG
Sbjct:  696 EAGISVIQTKGTQ--YTCTNMTKWDGLKRLDLALNSICLDDQNQIWWGHGKG 745
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71239.16989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A1W2G6N2_9BACT4.690e-1775.00Ligand-binding sensor domain-containing protein n=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71239contigM-pyrifera_M_contig71239:3..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1146
Cds size1146
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.9805925-CDS-M-pyrifera_M_contig71239:2..11481622816606.9805925-CDS-M-pyrifera_M_contig71239:2..1148Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71239 3..1148 -
1692278074.1241336-CDS-M-pyrifera_M_contig71239:2..11481692278074.1241336-CDS-M-pyrifera_M_contig71239:2..1148Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71239 3..1148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71239.16989.1prot_M-pyrifera_M_contig71239.16989.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71239 3..1148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71239.16989.1

>prot_M-pyrifera_M_contig71239.16989.1 ID=prot_M-pyrifera_M_contig71239.16989.1|Name=mRNA_M-pyrifera_M_contig71239.16989.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=382bp
KYDEKTLSLYGEKQGLPNGKILSMIQDKKGNFWLGTYGGGVIKFDRHQFS
HYTETDGLSNNTVLSILEDQSNNIWFGTNGGGVSKLKENSFNSYLGKGIL
ENNTVRSIIEDRRGNIWFCTDGAGMTKFDGQIYETYSEETGLPDGNIYCM
LEDRNGTFWFGTRGGGVFSFDGQYFVTYTEEDGLAHNNVRSMYEDINGNL
WFGTYGGGVSRFDGTSFSTISEREGLGKNIVRCIVEDKKGNLWFGTDGGG
VAKYDGTRLMNLTEESGLPSNIVMTIFEDKKGNMWFGTWGGGLCKFDGNR
FEHFTKESGLTHDLVLSIVEDRNENIWVGTEAGVSVLQSSGNDGDFTCTN
MTKWDGIKRLDLALNAICLDRNNQIWWGHGKG
back to top

mRNA from alignment at M-pyrifera_M_contig71239:3..1148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71239.16989.1 ID=mRNA_M-pyrifera_M_contig71239.16989.1|Name=mRNA_M-pyrifera_M_contig71239.16989.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig71239:3..1148- (Macrocystis pyrifera P11B4 male)
AAATATGATGAAAAAACCCTGAGTCTTTACGGAGAAAAACAAGGGCTTCC
TAATGGGAAGATCCTTTCTATGATTCAGGACAAAAAGGGGAATTTTTGGC
TAGGTACCTATGGAGGAGGCGTCATAAAATTTGACAGGCATCAATTCAGC
CATTATACAGAAACAGACGGACTTTCGAATAATACAGTTCTTAGTATTCT
AGAAGACCAAAGCAACAATATCTGGTTCGGGACTAATGGAGGTGGAGTGA
GTAAGCTAAAAGAGAATTCTTTTAACAGCTATTTAGGCAAGGGTATTCTG
GAAAACAATACCGTTAGATCAATCATAGAAGACCGAAGAGGCAATATTTG
GTTCTGCACAGATGGAGCCGGAATGACAAAATTTGACGGCCAAATCTATG
AAACTTATTCAGAGGAAACCGGCCTTCCTGATGGCAACATCTATTGTATG
TTGGAAGATAGAAATGGTACTTTTTGGTTCGGGACTAGAGGAGGAGGCGT
TTTTTCGTTTGATGGACAATATTTTGTGACCTATACGGAAGAGGATGGTT
TGGCTCATAACAACGTACGATCCATGTATGAAGATATCAACGGTAACCTG
TGGTTCGGTACTTATGGAGGGGGGGTGAGCAGGTTTGATGGCACCTCTTT
TTCAACCATAAGTGAGCGTGAGGGGTTAGGAAAAAATATAGTCAGATGTA
TCGTCGAAGATAAAAAAGGAAATCTATGGTTCGGCACTGACGGAGGGGGT
GTTGCCAAATATGATGGCACCAGATTGATGAACTTGACTGAAGAATCCGG
ACTGCCGAGTAATATAGTAATGACCATATTTGAAGATAAAAAAGGCAATA
TGTGGTTTGGGACCTGGGGAGGTGGCTTGTGCAAATTCGATGGTAATAGA
TTCGAACATTTTACTAAAGAAAGTGGATTGACTCATGATTTGGTTTTATC
CATCGTAGAAGATAGAAATGAAAATATATGGGTTGGGACGGAAGCAGGAG
TAAGTGTGCTTCAGTCGTCAGGAAATGACGGGGATTTTACCTGTACCAAT
ATGACTAAGTGGGATGGGATAAAGCGGTTAGACCTGGCACTGAATGCCAT
TTGTCTGGACAGAAACAACCAAATCTGGTGGGGACATGGCAAGGGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig71239:3..1148-

>mRNA_M-pyrifera_M_contig71239.16989.1 ID=mRNA_M-pyrifera_M_contig71239.16989.1|Name=mRNA_M-pyrifera_M_contig71239.16989.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2292bp|location=Sequence derived from alignment at M-pyrifera_M_contig71239:3..1148- (Macrocystis pyrifera P11B4 male)
AAATATGATGAAAAAACCCTGAGTCTTTACGGAGAAAAACAAGGGCTTCC
TAATGGGAAGATCCTTTCTATGATTCAGGACAAAAAGGGGAATTTTTGGC
TAGGTACCTATGGAGGAGGCGTCATAAAATTTGACAGGCATCAATTCAGC
CATTATACAGAAACAGACGGACTTTCGAATAATACAGTTCTTAGTATTCT
AGAAGACCAAAGCAACAATATCTGGTTCGGGACTAATGGAGGTGGAGTGA
GTAAGCTAAAAGAGAATTCTTTTAACAGCTATTTAGGCAAGGGTATTCTG
GAAAACAATACCGTTAGATCAATCATAGAAGACCGAAGAGGCAATATTTG
GTTCTGCACAGATGGAGCCGGAATGACAAAATTTGACGGCCAAATCTATG
AAACTTATTCAGAGGAAACCGGCCTTCCTGATGGCAACATCTATTGTATG
TTGGAAGATAGAAATGGTACTTTTTGGTTCGGGACTAGAGGAGGAGGCGT
TTTTTCGTTTGATGGACAATATTTTGTGACCTATACGGAAGAGGATGGTT
TGGCTCATAACAACGTACGATCCATGTATGAAGATATCAACGGTAACCTG
TGGTTCGGTACTTATGGAGGGGGGGTGAGCAGGTTTGATGGCACCTCTTT
TTCAACCATAAGTGAGCGTGAGGGGTTAGGAAAAAATATAGTCAGATGTA
TCGTCGAAGATAAAAAAGGAAATCTATGGTTCGGCACTGACGGAGGGGGT
GTTGCCAAATATGATGGCACCAGATTGATGAACTTGACTGAAGAATCCGG
ACTGCCGAGTAATATAGTAATGACCATATTTGAAGATAAAAAAGGCAATA
TGTGGTTTGGGACCTGGGGAGGTGGCTTGTGCAAATTCGATGGTAATAGA
TTCGAACATTTTACTAAAGAAAGTGGATTGACTCATGATTTGGTTTTATC
CATCGTAGAAGATAGAAATGAAAATATATGGGTTGGGACGGAAGCAGGAG
TAAGTGTGCTTCAGTCGTCAGGAAATGACGGGGATTTTACCTGTACCAAT
ATGACTAAGTGGGATGGGATAAAGCGGTTAGACCTGGCACTGAATGCCAT
TTGTCTGGACAGAAACAACCAAATCTGGTGGGGACATGGCAAGGGTAAAT
ATGATGAAAAAACCCTGAGTCTTTACGGAGAAAAACAAGGGCTTCCTAAT
GGGAAGATCCTTTCTATGATTCAGGACAAAAAGGGGAATTTTTGGCTAGG
TACCTATGGAGGAGGCGTCATAAAATTTGACAGGCATCAATTCAGCCATT
ATACAGAAACAGACGGACTTTCGAATAATACAGTTCTTAGTATTCTAGAA
GACCAAAGCAACAATATCTGGTTCGGGACTAATGGAGGTGGAGTGAGTAA
GCTAAAAGAGAATTCTTTTAACAGCTATTTAGGCAAGGGTATTCTGGAAA
ACAATACCGTTAGATCAATCATAGAAGACCGAAGAGGCAATATTTGGTTC
TGCACAGATGGAGCCGGAATGACAAAATTTGACGGCCAAATCTATGAAAC
TTATTCAGAGGAAACCGGCCTTCCTGATGGCAACATCTATTGTATGTTGG
AAGATAGAAATGGTACTTTTTGGTTCGGGACTAGAGGAGGAGGCGTTTTT
TCGTTTGATGGACAATATTTTGTGACCTATACGGAAGAGGATGGTTTGGC
TCATAACAACGTACGATCCATGTATGAAGATATCAACGGTAACCTGTGGT
TCGGTACTTATGGAGGGGGGGTGAGCAGGTTTGATGGCACCTCTTTTTCA
ACCATAAGTGAGCGTGAGGGGTTAGGAAAAAATATAGTCAGATGTATCGT
CGAAGATAAAAAAGGAAATCTATGGTTCGGCACTGACGGAGGGGGTGTTG
CCAAATATGATGGCACCAGATTGATGAACTTGACTGAAGAATCCGGACTG
CCGAGTAATATAGTAATGACCATATTTGAAGATAAAAAAGGCAATATGTG
GTTTGGGACCTGGGGAGGTGGCTTGTGCAAATTCGATGGTAATAGATTCG
AACATTTTACTAAAGAAAGTGGATTGACTCATGATTTGGTTTTATCCATC
GTAGAAGATAGAAATGAAAATATATGGGTTGGGACGGAAGCAGGAGTAAG
TGTGCTTCAGTCGTCAGGAAATGACGGGGATTTTACCTGTACCAATATGA
CTAAGTGGGATGGGATAAAGCGGTTAGACCTGGCACTGAATGCCATTTGT
CTGGACAGAAACAACCAAATCTGGTGGGGACATGGCAAGGGT
back to top