mRNA_M-pyrifera_M_contig71237.16988.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71237.16988.1
Unique NamemRNA_M-pyrifera_M_contig71237.16988.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71237.16988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71237contigM-pyrifera_M_contig71237:157..717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue2e-07
Seed eggNOG ortholog497965.Cyan7822_5103
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Extracellular repeat protein, HAF family
EggNOG OGs1GASM@1117,COG5563@1,COG5563@2
COG Functional cat.S
Best tax levelCyanobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.9442556-CDS-M-pyrifera_M_contig71237:156..7171622816606.9442556-CDS-M-pyrifera_M_contig71237:156..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71237 157..717 -
1692278074.1112719-CDS-M-pyrifera_M_contig71237:156..7171692278074.1112719-CDS-M-pyrifera_M_contig71237:156..717Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71237 157..717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71237.16988.1prot_M-pyrifera_M_contig71237.16988.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71237 157..717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71237.16988.1

>prot_M-pyrifera_M_contig71237.16988.1 ID=prot_M-pyrifera_M_contig71237.16988.1|Name=mRNA_M-pyrifera_M_contig71237.16988.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
YSLTPLGDIAGGDFESRALGINQSGQITGFSVDGEQLLDKQVATIFDPPG
AIENLGRLNPTDFGSYGNAINDLGYVVGRSSSLFGTFPQIPGTDDHAVLW
NPNTQSWTDLGDFEGGVISAEALGINNSNLVVGASRDADEFKAFTWTAEQ
GLFKIPTSGNFLSDGRSVAHGVTDAGLVYGSAETAAG
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mRNA from alignment at M-pyrifera_M_contig71237:157..717-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71237.16988.1 ID=mRNA_M-pyrifera_M_contig71237.16988.1|Name=mRNA_M-pyrifera_M_contig71237.16988.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig71237:157..717- (Macrocystis pyrifera P11B4 male)
TATTCTCTAACTCCGCTGGGCGATATCGCAGGGGGAGACTTTGAGAGCAG
AGCGTTGGGGATCAATCAGAGTGGACAGATAACCGGGTTTTCCGTCGATG
GTGAACAACTCCTTGACAAGCAGGTCGCAACAATTTTCGATCCGCCTGGA
GCCATTGAAAACCTTGGAAGGCTTAACCCGACTGATTTCGGTTCGTATGG
AAATGCGATCAACGACCTTGGCTACGTAGTCGGACGAAGTTCCAGCCTCT
TCGGTACTTTTCCACAGATCCCTGGTACCGACGACCATGCAGTACTCTGG
AACCCGAACACTCAAAGTTGGACAGACTTGGGTGATTTCGAAGGGGGTGT
GATCTCCGCGGAAGCCTTAGGCATCAACAATAGCAATTTGGTTGTCGGTG
CCAGCAGGGACGCTGACGAGTTCAAAGCGTTCACCTGGACGGCCGAGCAA
GGGCTATTCAAAATTCCGACGTCCGGAAACTTCTTGAGTGATGGCCGCAG
TGTTGCCCACGGCGTGACTGACGCAGGGCTGGTCTATGGTTCTGCAGAAA
CTGCCGCGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71237:157..717-

>mRNA_M-pyrifera_M_contig71237.16988.1 ID=mRNA_M-pyrifera_M_contig71237.16988.1|Name=mRNA_M-pyrifera_M_contig71237.16988.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig71237:157..717- (Macrocystis pyrifera P11B4 male)
TATTCTCTAACTCCGCTGGGCGATATCGCAGGGGGAGACTTTGAGAGCAG
AGCGTTGGGGATCAATCAGAGTGGACAGATAACCGGGTTTTCCGTCGATG
GTGAACAACTCCTTGACAAGCAGGTCGCAACAATTTTCGATCCGCCTGGA
GCCATTGAAAACCTTGGAAGGCTTAACCCGACTGATTTCGGTTCGTATGG
AAATGCGATCAACGACCTTGGCTACGTAGTCGGACGAAGTTCCAGCCTCT
TCGGTACTTTTCCACAGATCCCTGGTACCGACGACCATGCAGTACTCTGG
AACCCGAACACTCAAAGTTGGACAGACTTGGGTGATTTCGAAGGGGGTGT
GATCTCCGCGGAAGCCTTAGGCATCAACAATAGCAATTTGGTTGTCGGTG
CCAGCAGGGACGCTGACGAGTTCAAAGCGTTCACCTGGACGGCCGAGCAA
GGGCTATTCAAAATTCCGACGTCCGGAAACTTCTTGAGTGATGGCCGCAG
TGTTGCCCACGGCGTGACTGACGCAGGGCTGGTCTATGGTTCTGCAGAAA
CTGCCGCGGGCTATTCTCTAACTCCGCTGGGCGATATCGCAGGGGGAGAC
TTTGAGAGCAGAGCGTTGGGGATCAATCAGAGTGGACAGATAACCGGGTT
TTCCGTCGATGGTGAACAACTCCTTGACAAGCAGGTCGCAACAATTTTCG
ATCCGCCTGGAGCCATTGAAAACCTTGGAAGGCTTAACCCGACTGATTTC
GGTTCGTATGGAAATGCGATCAACGACCTTGGCTACGTAGTCGGACGAAG
TTCCAGCCTCTTCGGTACTTTTCCACAGATCCCTGGTACCGACGACCATG
CAGTACTCTGGAACCCGAACACTCAAAGTTGGACAGACTTGGGTGATTTC
GAAGGGGGTGTGATCTCCGCGGAAGCCTTAGGCATCAACAATAGCAATTT
GGTTGTCGGTGCCAGCAGGGACGCTGACGAGTTCAAAGCGTTCACCTGGA
CGGCCGAGCAAGGGCTATTCAAAATTCCGACGTCCGGAAACTTCTTGAGT
GATGGCCGCAGTGTTGCCCACGGCGTGACTGACGCAGGGCTGGTCTATGG
TTCTGCAGAAACTGCCGCGGGC
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