mRNA_M-pyrifera_M_contig71156.16971.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig71156.16971.1
Unique NamemRNA_M-pyrifera_M_contig71156.16971.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig71156.16971.1 vs. uniprot
Match: A0A7S2U2J4_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2U2J4_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 1.460e-17
Identity = 65/194 (33.51%), Postives = 94/194 (48.45%), Query Frame = 1 
Query:   16 PALLLVLMYSASMTVRSTLSFPFLRTLVECKHHTPSNFDRSSRDWSGSAKCNNSATVIETAQLYRGFASGTDLAVQCVTLPAAGHLADSLGRR---TMAMHSIWMFFFASALFLLGAAWQDYVTY-YVGFVVQSFGGILGIVVSTQVADVIPNPDQRGLIVGLYTAISVLFGVIATVIANVAVIAMNPVDYSEP 585
            P L  V++Y+A+ T +  L F FLR+ + C   TP++FDRSS DWSGS  CN+   V   A L +G A+G +   Q   LPAAG +ADSLGR    T++         A A+  L +     V    V  +++ F     ++    V D+  +   RG + G      ++   I   I    VIA N  DY+ P
Sbjct:   62 PLLSFVMVYAAANTTKGLLFFFFLRSTIVCGEETPADFDRSSSDWSGSRYCNDRCRVARDATLIKGIANGIEHFGQLFCLPAAGVIADSLGRNFPFTVSFAGFSASMLALAVAALVSRGPSVVPLAMVSSLLRGFTDSFHVMRQVSVTDMFSSAKGRGYVYGNIIVFRIICSGIVAFILTATVIAENTYDYAAP 255
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BLAST of mRNA_M-pyrifera_M_contig71156.16971.1 vs. uniprot
Match: A0A7S3YTJ5_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YTJ5_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 2.110e-15
Identity = 61/182 (33.52%), Postives = 89/182 (48.90%), Query Frame = 1 
Query:   55 TVRSTLSFPFLRTLVECKHHTPSNFDRSSRDWSGSAKCNNSATVIETAQLYRGFASGTDLAVQCVTLPAAGHLADSLGRR-TMAMHSIWMFFFASALFLLGAAWQDY-----VTYYVGFVVQSFGGILGIVVSTQVADVIPNPDQRGLIVGLYTAISVLFGVIATVIANVAVIAMNPVDYSE 582
            T R  L F FLRT ++C   TP +FDR+SRDWSGS  C++   V   AQL  G + G +   Q + LP  G L+D+ GRR T+ +  I +   AS   L  AA Q       +  +    V+ F     +  +  VAD+      RG + G+     +    +ATVI   +VI+ N  +Y +
Sbjct:   72 TCRLLLYFVFLRTTIKCTTATPDDFDRNSRDWSGSKYCSDRCEVASEAQLLMGISEGIEQVAQFLMLPFLGVLSDAFGRRLTLTITEIGLT--ASTALLAVAAMQRTGPLIAILVFSSAAVRGFTNSFTVSTNAAVADLFQETKTRGHVYGVLQVYVLSIDGLATVIITASVISQNRYNYDD 251
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig71156.16971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2U2J4_9EUKA1.460e-1733.51Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S3YTJ5_9EUKA2.110e-1533.52Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig71156contigM-pyrifera_M_contig71156:250..978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue3.3e-17
Seed eggNOG ortholog227086.JGI_V11_146924
Hectar predicted targeting categorysignal peptide
EggNOG OGs2EX1Q@1,2SYSP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size660
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816605.8819249-CDS-M-pyrifera_M_contig71156:249..7511622816605.8819249-CDS-M-pyrifera_M_contig71156:249..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71156 250..751 -
1692278073.3593426-CDS-M-pyrifera_M_contig71156:249..7511692278073.3593426-CDS-M-pyrifera_M_contig71156:249..751Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71156 250..751 -
1622816605.8923542-CDS-M-pyrifera_M_contig71156:820..9781622816605.8923542-CDS-M-pyrifera_M_contig71156:820..978Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71156 821..978 -
1692278073.3725183-CDS-M-pyrifera_M_contig71156:820..9781692278073.3725183-CDS-M-pyrifera_M_contig71156:820..978Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig71156 821..978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig71156.16971.1prot_M-pyrifera_M_contig71156.16971.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig71156 250..978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig71156.16971.1

>prot_M-pyrifera_M_contig71156.16971.1 ID=prot_M-pyrifera_M_contig71156.16971.1|Name=mRNA_M-pyrifera_M_contig71156.16971.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=220bp
LRGLIPALLLVLMYSASMTVRSTLSFPFLRTLVECKHHTPSNFDRSSRDW
SGSAKCNNSATVIETAQLYRGFASGTDLAVQCVTLPAAGHLADSLGRRTM
AMHSIWMFFFASALFLLGAAWQDYVTYYVGFVVQSFGGILGIVVSTQVAD
VIPNPDQRGLIVGLYTAISVLFGVIATVIANVAVIAMNPVDYSEPASVLF
IISCLVVIGVFVIFPETLSV
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mRNA from alignment at M-pyrifera_M_contig71156:250..978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig71156.16971.1 ID=mRNA_M-pyrifera_M_contig71156.16971.1|Name=mRNA_M-pyrifera_M_contig71156.16971.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=729bp|location=Sequence derived from alignment at M-pyrifera_M_contig71156:250..978- (Macrocystis pyrifera P11B4 male)
TTACGAGGACTCATTCCAGCTCTCTTGTTAGTGTTGATGTATTCTGCATC
AATGACTGTGCGTTCTACACTCAGTTTTCCCTTTTTACGAACATTAGTAG
AGTGCAAACACCATACACCATCGAATTTTGATAGGAGTAGTCGAGATTGG
TCTGGAAGGTAGGTGATAGGGTGATGGAGTTGGGGTGATTGTGGTTGGAG
ATGGGAGAGGAGATGTGGTTTGTGCAGTGCAAAGTGTAACAATTCTGCTA
CGGTGATTGAAACAGCCCAACTCTATCGTGGGTTTGCGAGTGGGACTGAT
TTGGCGGTACAATGTGTCACATTGCCAGCTGCTGGCCACTTGGCGGATTC
TCTAGGGCGCAGGACAATGGCGATGCATTCGATCTGGATGTTTTTCTTCG
CCTCTGCGTTGTTTTTGCTCGGGGCCGCGTGGCAAGATTACGTGACCTAC
TACGTTGGTTTCGTGGTGCAAAGCTTTGGTGGGATCTTGGGAATTGTGGT
GTCAACCCAAGTCGCTGATGTGATCCCGAATCCAGACCAGCGCGGGTTGA
TTGTGGGGTTGTACACTGCGATCAGCGTCCTGTTTGGCGTGATCGCCACT
GTCATCGCAAACGTTGCAGTCATTGCAATGAACCCGGTGGATTACAGTGA
ACCCGCGAGCGTTCTATTCATTATTTCATGTCTCGTGGTGATTGGGGTCT
TTGTCATCTTCCCGGAAACTCTGTCAGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig71156:250..978-

>mRNA_M-pyrifera_M_contig71156.16971.1 ID=mRNA_M-pyrifera_M_contig71156.16971.1|Name=mRNA_M-pyrifera_M_contig71156.16971.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1320bp|location=Sequence derived from alignment at M-pyrifera_M_contig71156:250..978- (Macrocystis pyrifera P11B4 male)
TTACGAGGACTCATTCCAGCTCTCTTGTTAGTGTTGATGTATTCTGCATC
AATGACTGTGCGTTCTACACTCAGTTTTCCCTTTTTACGAACATTAGTAG
AGTGCAAACACCATACACCATCGAATTTTGATAGGAGTAGTCGAGATTGG
TCTGGAAGTTACGAGGACTCATTCCAGCTCTCTTGTTAGTGTTGATGTAT
TCTGCATCAATGACTGTGCGTTCTACACTCAGTTTTCCCTTTTTACGAAC
ATTAGTAGAGTGCAAACACCATACACCATCGAATTTTGATAGGAGTAGTC
GAGATTGGTCTGGAAGTGCAAAGTGTAACAATTCTGCTACGGTGATTGAA
ACAGCCCAACTCTATCGTGGGTTTGCGAGTGGGACTGATTTGGCGGTACA
ATGTGTCACATTGCCAGCTGCTGGCCACTTGGCGGATTCTCTAGGGCGCA
GGACAATGGCGATGCATTCGATCTGGATGTTTTTCTTCGCCTCTGCGTTG
TTTTTGCTCGGGGCCGCGTGGCAAGATTACGTGACCTACTACGTTGGTTT
CGTGGTGCAAAGCTTTGGTGGGATCTTGGGAATTGTGGTGTCAACCCAAG
TCGCTGATGTGATCCCGAATCCAGACCAGCGCGGGTTGATTGTGGGGTTG
TACACTGCGATCAGCGTCCTGTTTGGCGTGATCGCCACTGTCATCGCAAA
CGTTGCAGTCATTGCAATGAACCCGGTGGATTACAGTGAACCCGCGAGCG
TTCTATTCATTATTTCATGTCTCGTGGTGATTGGGGTCTTTGTCATCTTC
CCGGAAACTCTGTCAGTGTGCAAAGTGTAACAATTCTGCTACGGTGATTG
AAACAGCCCAACTCTATCGTGGGTTTGCGAGTGGGACTGATTTGGCGGTA
CAATGTGTCACATTGCCAGCTGCTGGCCACTTGGCGGATTCTCTAGGGCG
CAGGACAATGGCGATGCATTCGATCTGGATGTTTTTCTTCGCCTCTGCGT
TGTTTTTGCTCGGGGCCGCGTGGCAAGATTACGTGACCTACTACGTTGGT
TTCGTGGTGCAAAGCTTTGGTGGGATCTTGGGAATTGTGGTGTCAACCCA
AGTCGCTGATGTGATCCCGAATCCAGACCAGCGCGGGTTGATTGTGGGGT
TGTACACTGCGATCAGCGTCCTGTTTGGCGTGATCGCCACTGTCATCGCA
AACGTTGCAGTCATTGCAATGAACCCGGTGGATTACAGTGAACCCGCGAG
CGTTCTATTCATTATTTCATGTCTCGTGGTGATTGGGGTCTTTGTCATCT
TCCCGGAAACTCTGTCAGTG
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