mRNA_M-pyrifera_M_contig70901.16925.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70901.16925.1
Unique NamemRNA_M-pyrifera_M_contig70901.16925.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: D8LIU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIU3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.540e-30
Identity = 58/70 (82.86%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:   13 ISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVPELRGE 222
            IS+ CFKGKRTSKQCRARFMNHLDP LRH PWTF ENAALK AA AY G   RQIKWASIVKDVPEL GE
Sbjct:  381 ISEACFKGKRTSKQCRARFMNHLDPGLRHFPWTFAENAALKKAANAYNG---RQIKWASIVKDVPELIGE 447
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: A0A6H5JFS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS7_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.380e-29
Identity = 57/69 (82.61%), Postives = 58/69 (84.06%), Query Frame = 1 
Query:   13 ISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVPELRG 219
            IS+ CFKGKRTSKQCRARFMNHLDP LRH PWTF ENAALK AA AY G   RQIKWASIVKDVPEL G
Sbjct:  209 ISEACFKGKRTSKQCRARFMNHLDPGLRHLPWTFAENAALKKAANAYNG---RQIKWASIVKDVPELIG 274
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: A0A7S3PFE6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFE6_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.860e-7
Identity = 28/60 (46.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:   28 FKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            +KG R++KQCR R+MNHLDP L+ S W+  E+ AL   A+AY        KWA I +++P
Sbjct:  226 YKG-RSAKQCRERWMNHLDPGLKKSEWSVEEDFALLQFASAYPK------KWARIAREIP 278
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: A0A1V9ZMK9_9STRA (Myb-like DNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZMK9_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.340e-6
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:   13 ISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            +++  F  +RT KQCR R++NHLDP ++  PWT  E + ++ A    Q   G   KWA I K +P
Sbjct:   49 LNNENFGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDA----QNRLGN--KWAEISKLLP 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: A0A024TC07_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TC07_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.350e-6
Identity = 26/65 (40.00%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:   13 ISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            +++  F  +RT KQCR R++NHLDP ++  PWT  E + ++ A    Q   G   KWA I K +P
Sbjct:   57 LNNENFGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDA----QNRLGN--KWAEISKLLP 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: A0A1V9ZB05_9STRA (Myb-like DNA-binding protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZB05_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.200e-6
Identity = 26/60 (43.33%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:   28 FKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            F  +RT KQCR R++NHLDP ++  PWT  E + ++ A    Q   G   KWA I K +P
Sbjct:   56 FGNERTGKQCRTRWLNHLDPSIKKDPWTTEEESIIEDA----QNRLGN--KWAEISKLLP 109
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: A0A8J2WEX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WEX8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.060e-6
Identity = 26/69 (37.68%), Postives = 34/69 (49.28%), Query Frame = 1 
Query:    1 MFPQISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            +  Q  +T   G RT KQCR R++NHLDP ++  PW+  E        T Y        KWA I K +P
Sbjct:   69 LISQELNTQISGNRTGKQCRTRWLNHLDPRIKRDPWSPQEER------TIYDAQRQLGNKWAEIAKLLP 131
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: D7G0Z5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z5_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.520e-6
Identity = 27/68 (39.71%), Postives = 34/68 (50.00%), Query Frame = 1 
Query:    4 FPQISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            + QISD      R  KQCR R++NHLDP LRH PWT  E   L +             +WA I + +P
Sbjct:  649 WSQISD--HMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNN------QWAEIARQIP 708
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: A0A6H5L2W7_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.540e-6
Identity = 27/68 (39.71%), Postives = 34/68 (50.00%), Query Frame = 1 
Query:    4 FPQISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            + QISD      R  KQCR R++NHLDP LRH PWT  E   L +             +WA I + +P
Sbjct: 1037 WSQISD--HMPGRVGKQCRERYLNHLDPSLRHGPWTEEEERLLLSLHARLNN------QWAEIARQIP 1096
[Close]
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Match: B7G9A5_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A5_PHATC)

HSP 1 Score: 49.7 bits (117), Expect = 5.840e-6
Identity = 27/60 (45.00%), Postives = 34/60 (56.67%), Query Frame = 1 
Query:   28 FKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATAYQGNTGRQIKWASIVKDVP 207
            F   R  KQCR RF+NHLDP L+   WT  E A L  A   + GN     +WA+I K++P
Sbjct:   29 FLPGRQGKQCRERFVNHLDPELKKGEWTDDEEAIL-IAMHEHHGN-----RWANIAKNLP 82
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70901.16925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIU3_ECTSI2.540e-3082.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFS7_9PHAE4.380e-2982.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3PFE6_9STRA4.860e-746.67Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A1V9ZMK9_9STRA2.340e-640.00Myb-like DNA-binding protein n=1 Tax=Achlya hypogy... [more]
A0A024TC07_9STRA2.350e-640.00Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A1V9ZB05_9STRA3.200e-643.33Myb-like DNA-binding protein n=1 Tax=Thraustotheca... [more]
A0A8J2WEX8_9STRA4.060e-637.68Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
D7G0Z5_ECTSI4.520e-639.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L2W7_9PHAE4.540e-639.71MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
B7G9A5_PHATC5.840e-645.00Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70901contigM-pyrifera_M_contig70901:207..725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.6
Seed ortholog evalue3.2e-25
Seed eggNOG ortholog2880.D8LIU3
KEGG rclassRC00027,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00166,ko:K09422
KEGG ReactionR07599,R07600,R07601,R07602,R07603,R07604,R10996,R10997
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006082,GO:0006575,GO:0006732,GO:0006766,GO:0006767,GO:0006807,GO:0008150,GO:0008152,GO:0008677,GO:0009058,GO:0009108,GO:0009110,GO:0009987,GO:0015939,GO:0015940,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0019752,GO:0032787,GO:0034641,GO:0042364,GO:0042398,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0046394,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:0072330,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
EC1.2.4.4
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03000
Exons2
Model size225
Cds size225
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816603.3041894-CDS-M-pyrifera_M_contig70901:206..3411622816603.3041894-CDS-M-pyrifera_M_contig70901:206..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70901 207..341 +
1692278071.8860369-CDS-M-pyrifera_M_contig70901:206..3411692278071.8860369-CDS-M-pyrifera_M_contig70901:206..341Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70901 207..341 +
1622816603.3193371-CDS-M-pyrifera_M_contig70901:635..7251622816603.3193371-CDS-M-pyrifera_M_contig70901:635..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70901 636..725 +
1692278071.8999875-CDS-M-pyrifera_M_contig70901:635..7251692278071.8999875-CDS-M-pyrifera_M_contig70901:635..725Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70901 636..725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70901.16925.1prot_M-pyrifera_M_contig70901.16925.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70901 207..725 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70901.16925.1

>prot_M-pyrifera_M_contig70901.16925.1 ID=prot_M-pyrifera_M_contig70901.16925.1|Name=mRNA_M-pyrifera_M_contig70901.16925.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=75bp
MFPQISDTCFKGKRTSKQCRARFMNHLDPCLRHSPWTFTENAALKAAATA
YQGNTGRQIKWASIVKDVPELRGE*
back to top

mRNA from alignment at M-pyrifera_M_contig70901:207..725+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70901.16925.1 ID=mRNA_M-pyrifera_M_contig70901.16925.1|Name=mRNA_M-pyrifera_M_contig70901.16925.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=519bp|location=Sequence derived from alignment at M-pyrifera_M_contig70901:207..725+ (Macrocystis pyrifera P11B4 male)
ATGTTTCCCCAGATTTCGGACACGTGCTTCAAGGGCAAGCGTACGTCGAA
GCAGTGTCGGGCGCGGTTCATGAACCACCTAGACCCTTGTCTACGACACA
GTCCGTGGACATTCACCGAAAACGCCGCCCTCAAGGTTAGTGGAACAAGT
GATAAGTGTTTTGAAGCTCAGCCCTTTCAGGAGTGCTGCCTTGTCCCCAA
GACGGGCCCGCAGTAACGAAAGGGGTTAAGGGGGTCCCGGCGGTCAGATT
TTTTTCAAGCCCAAAAAGGTGTACCCATGTCGTAGCTGCCTGGCGGTATA
TACTTGAGGCCGTAACAGTTTCACACGATGTTTTCCGCCCTACCCCTCTC
ACTCCAACCCCGCTCGCGACACGCCATTTTTTTGTGAACACCTCTTTTTT
TTTTTGGAATCGGTGAAACGGTTCATCAGGCCGCCGCTACTGCTTACCAG
GGGAACACTGGGCGTCAGATCAAGTGGGCCAGCATCGTCAAGGACGTGCC
GGAGCTCAGAGGTGAGTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70901:207..725+

>mRNA_M-pyrifera_M_contig70901.16925.1 ID=mRNA_M-pyrifera_M_contig70901.16925.1|Name=mRNA_M-pyrifera_M_contig70901.16925.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=450bp|location=Sequence derived from alignment at M-pyrifera_M_contig70901:207..725+ (Macrocystis pyrifera P11B4 male)
ATGTTTCCCCAGATTTCGGACACGTGCTTCAAGGGCAAGCGTACGTCGAA
GCAGTGTCGGGCGCGGTTCATGAACCACCTAGACCCTTGTCTACGACACA
GTCCGTGGACATTCACCGAAAACGCCGCCCTCAAGATGTTTCCCCAGATT
TCGGACACGTGCTTCAAGGGCAAGCGTACGTCGAAGCAGTGTCGGGCGCG
GTTCATGAACCACCTAGACCCTTGTCTACGACACAGTCCGTGGACATTCA
CCGAAAACGCCGCCCTCAAGGCCGCCGCTACTGCTTACCAGGGGAACACT
GGGCGTCAGATCAAGTGGGCCAGCATCGTCAAGGACGTGCCGGAGCTCAG
AGGTGAGTAAGCCGCCGCTACTGCTTACCAGGGGAACACTGGGCGTCAGA
TCAAGTGGGCCAGCATCGTCAAGGACGTGCCGGAGCTCAGAGGTGAGTAA
back to top