mRNA_M-pyrifera_M_contig7090.16924.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A6H5KP68_9PHAE (Eukaryotic translation initiation factor 3 subunit H n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP68_9PHAE) HSP 1 Score: 235 bits (599), Expect = 3.650e-75 Identity = 118/126 (93.65%), Postives = 122/126 (96.83%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEGNRVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNVQRQKQ 378
QENLSDNSVVILYDPVQTANGQLT+KAYRLSKAFM+VYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQE +RVDCDFDRLDLSTNPYLEKNLE LCNWIDDLSNEQ KFNQY+RNV RQKQ
Sbjct: 130 QENLSDNSVVILYDPVQTANGQLTIKAYRLSKAFMRVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEEDRVDCDFDRLDLSTNPYLEKNLEFLCNWIDDLSNEQQKFNQYTRNVARQKQ 255
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A836CJJ9_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJJ9_9STRA) HSP 1 Score: 185 bits (470), Expect = 1.450e-55 Identity = 88/128 (68.75%), Postives = 109/128 (85.16%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQE---GNRVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNVQRQK 375
QENLSDN+VV+LYDPVQTA GQLT+KAYRLSK FM+ YRE+K++ IKPSEIL+ELPI+IRNPG++NAL++DLQ +CDF+RLDLSTNPYLEKNLE LC W+DDL+NEQ KF Y+R + +Q+
Sbjct: 141 QENLSDNAVVVLYDPVQTARGQLTLKAYRLSKEFMRAYRERKSDHIKPSEILDELPIRIRNPGLVNALVYDLQGRGGAGSAECDFERLDLSTNPYLEKNLEFLCGWVDDLANEQWKFQAYTRTLLKQR 268
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A6V1NQH4_HETAK (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NQH4_HETAK) HSP 1 Score: 163 bits (412), Expect = 5.010e-47 Identity = 79/127 (62.20%), Postives = 102/127 (80.31%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEG-NRVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNVQRQKQ 378
Q+NLSDNSVVILYDP+QT+NG LT+KA+RL++AFM+ R N I+PSEILEELP++IRNPG++NAL++D+ +G DC FDRLDL PYLEKNLE LC W+DDL+ E KF Q++R V +Q+Q
Sbjct: 127 QDNLSDNSVVILYDPIQTSNGTLTLKAFRLTQAFMERNRRGDNGFIRPSEILEELPVRIRNPGLLNALVYDVTQGPGGADCTFDRLDLGGRPYLEKNLEFLCAWVDDLAAEHQKFQQHARAVAKQRQ 253
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A7S2RWA1_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWA1_9STRA) HSP 1 Score: 160 bits (404), Expect = 8.090e-46 Identity = 75/108 (69.44%), Postives = 92/108 (85.19%), Query Frame = 1
Query: 19 NSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEGNRVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKF 342
NSVVILYDP+QTA G+LT++A+RLS+ F++ + KNE I P+EILEELPIKIRNPG+INAL+FDLQ R+DCDF+RLDLSTNP+LEKNLE L W+DDL+ EQ KF
Sbjct: 160 NSVVILYDPIQTAKGKLTLRAFRLSEKFVEAVKRDKNEFIPPAEILEELPIKIRNPGLINALLFDLQGNERLDCDFERLDLSTNPFLEKNLEYLSAWVDDLAQEQYKF 267
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A7S2LLA7_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LLA7_9STRA) HSP 1 Score: 133 bits (335), Expect = 1.440e-35 Identity = 63/121 (52.07%), Postives = 87/121 (71.90%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQ--EGNRVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSR 357
Q +LS N+VV+LYDP QT G L ++AYRLS A M ++ N I PS+ EE+PI I+N G+ NAL++DL +G R CD+++LDL + Y+EKNLEL+C+W+DDL+NEQ KF Y+R
Sbjct: 154 QTDLSPNAVVLLYDPQQTLKGNLVLRAYRLSSACMNAMLKQNNSFISPSKFFEEIPIHIKNNGLANALLYDLNANDGGRFKCDYEQLDLEKDSYVEKNLELMCSWVDDLANEQHKFQYYAR 274
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: B8C426_THAPS (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C426_THAPS) HSP 1 Score: 132 bits (332), Expect = 5.030e-35 Identity = 64/130 (49.23%), Postives = 91/130 (70.00%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDL---------QEGNRVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNV 363
Q +LS N+VVILYDP+QTA+G L +K YRL++ +++ + KN I P +I EE+P+ + NPG++ +L+ D+ EG D FDRLDLSTNPYLEK+LE LC+W+DDL+ EQ KF Y+R++
Sbjct: 132 QTDLSPNAVVILYDPMQTAHGNLVLKCYRLTEEAVQLKQSGKNNYINPRKIFEEVPVTLSNPGLVRSLLRDVGDGLHGSYDAEGTGADTTFDRLDLSTNPYLEKHLEFLCSWVDDLAAEQYKFQHYTRSL 261
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A7S0C594_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C594_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.670e-35 Identity = 67/147 (45.58%), Postives = 91/147 (61.90%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEGNR------------------------VDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNVQR 369
Q +LS N+VV+LYDPVQT +GQLT+K YRL+ M++ + KN I I +E+P+K+ NPG+I L+ D+ +G VDC FD LDLSTNPYLEK+LE LC W+DDL++EQ KF ++RN+ R
Sbjct: 131 QTDLSPNAVVVLYDPVQTTHGQLTLKCYRLTDECMELKKSGKNLYINSKNIFQEIPVKLNNPGLIQGLLLDVVDGTYNSSSPSIAVKTAATGSSDEDLDVGVDCTFDNLDLSTNPYLEKHLEFLCQWVDDLASEQHKFQYFARNLAR 277
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: K0SND2_THAOC (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SND2_THAOC) HSP 1 Score: 131 bits (330), Expect = 8.990e-35 Identity = 63/129 (48.84%), Postives = 89/129 (68.99%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEG--------NRVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNV 363
Q +LS N+VV+LYDP+QTA+G L +K YRL+ +K+ KN I P EI +E+P+ + NPG++ +L+ D+ +G D FDRLDLSTNPYLEK+LE LC W+DDL++EQ KF Y+R++
Sbjct: 131 QADLSPNAVVVLYDPMQTAHGSLVLKCYRLTDEAVKLKTSGKNTFINPREIFQEVPVTLNNPGLVRSLLRDMGDGLHGPYGEEGGPDTTFDRLDLSTNPYLEKHLEFLCTWVDDLASEQYKFQHYTRSL 259
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A7S2VDN7_9STRA (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VDN7_9STRA) HSP 1 Score: 129 bits (324), Expect = 5.800e-34 Identity = 63/137 (45.99%), Postives = 87/137 (63.50%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEGNRVDC--------------DFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNVQR 369
Q +LS N+VVILYDP+QT NG + +K YRLS + + + N I P I EE+P+ + NPG++ AL+ D+ +G+ D FDRLD+STNPYLEK+LE LC W+D+LS+EQ KF Y+R + R
Sbjct: 124 QTDLSPNAVVILYDPMQTTNGTMVLKCYRLSDECVALKERESNAFIDPKNIFEEIPVTLTNPGLVRALLTDISDGSTADSINGKNELYDMGTDTSFDRLDMSTNPYLEKHLEFLCGWVDELSSEQHKFQYYARQLSR 260
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Match: A0A7S1GHL4_CYCTE (Eukaryotic translation initiation factor 3 subunit H n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GHL4_CYCTE) HSP 1 Score: 129 bits (324), Expect = 6.820e-34 Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 1
Query: 1 QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEILEELPIKIRNPGIINALIFDLQEGN-------RVDCDFDRLDLSTNPYLEKNLELLCNWIDDLSNEQVKFNQYSRNVQR 369
Q LS N+VV+LYDP+QT++G L +K +RL++ +++ KN I PS+I EE+P+ I NPG+ L+ D+ G D FDRLDLSTNPYLEK+LE LC+W+DDL+ EQ KF ++RN R
Sbjct: 140 QTELSPNAVVVLYDPMQTSHGNLVLKCFRLTEECLQLQSSGKNTFIDPSKIFEEIPVDISNPGLTQVLLSDVATGRYGTDIVATTDTTFDRLDLSTNPYLEKHLEFLCSWVDDLATEQQKFQYFARNATR 269 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig7090.16924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig7090.16924.1 >prot_M-pyrifera_M_contig7090.16924.1 ID=prot_M-pyrifera_M_contig7090.16924.1|Name=mRNA_M-pyrifera_M_contig7090.16924.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=126bp QENLSDNSVVILYDPVQTANGQLTMKAYRLSKAFMKVYREKKNEVIKPSEback to top mRNA from alignment at M-pyrifera_M_contig7090:267..1713+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig7090.16924.1 ID=mRNA_M-pyrifera_M_contig7090.16924.1|Name=mRNA_M-pyrifera_M_contig7090.16924.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1447bp|location=Sequence derived from alignment at M-pyrifera_M_contig7090:267..1713+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig7090:267..1713+ >mRNA_M-pyrifera_M_contig7090.16924.1 ID=mRNA_M-pyrifera_M_contig7090.16924.1|Name=mRNA_M-pyrifera_M_contig7090.16924.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=756bp|location=Sequence derived from alignment at M-pyrifera_M_contig7090:267..1713+ (Macrocystis pyrifera P11B4 male)back to top |