mRNA_M-pyrifera_M_contig70874.16916.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70874.16916.1
Unique NamemRNA_M-pyrifera_M_contig70874.16916.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70874.16916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70874contigM-pyrifera_M_contig70874:2..699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size698
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70874.16916.1prot_M-pyrifera_M_contig70874.16916.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70874 243..617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.5883791-UTR-M-pyrifera_M_contig70874:1..2421622816602.5883791-UTR-M-pyrifera_M_contig70874:1..242Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70874 2..242 +
1692278071.4536715-UTR-M-pyrifera_M_contig70874:1..2421692278071.4536715-UTR-M-pyrifera_M_contig70874:1..242Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70874 2..242 +
1622816602.611889-UTR-M-pyrifera_M_contig70874:617..6991622816602.611889-UTR-M-pyrifera_M_contig70874:617..699Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70874 618..699 +
1692278071.4749017-UTR-M-pyrifera_M_contig70874:617..6991692278071.4749017-UTR-M-pyrifera_M_contig70874:617..699Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig70874 618..699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.5999186-CDS-M-pyrifera_M_contig70874:242..6171622816602.5999186-CDS-M-pyrifera_M_contig70874:242..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70874 243..617 +
1692278071.4649518-CDS-M-pyrifera_M_contig70874:242..6171692278071.4649518-CDS-M-pyrifera_M_contig70874:242..617Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70874 243..617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70874.16916.1

>prot_M-pyrifera_M_contig70874.16916.1 ID=prot_M-pyrifera_M_contig70874.16916.1|Name=mRNA_M-pyrifera_M_contig70874.16916.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=125bp
MTLSQRRGAGVFPVLGGCWEIPSLAKIVRSLSEVYCRRHTDRPVVYEFDV
VPDLAKILFTVQSFVLLKGTNCRKRISLLILISWVCTFRRESTREKVRNP
RKMQARVPEVGGEGRRVCFVTPGF*
back to top

mRNA from alignment at M-pyrifera_M_contig70874:2..699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70874.16916.1 ID=mRNA_M-pyrifera_M_contig70874.16916.1|Name=mRNA_M-pyrifera_M_contig70874.16916.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=698bp|location=Sequence derived from alignment at M-pyrifera_M_contig70874:2..699+ (Macrocystis pyrifera P11B4 male)
TATTTGTGTGCCGCTGATCGATAACGCTACACAGACCATAATCAACTAAA
AGTTACCAGAAGCACGTATTGCGAAAGGTCGAACTTATTATGTATACCAA
CACCGTCGAGGACGTCGGCATGGAAGTGGAGAGGGAGTACGAGGAGGGAG
CGGAAGCCGCAGAAAGGCGAACCCACCCGTCACACGGCAGTTAGTTGCTG
CGTTGTAAGGCCCTCGTCCTTTCATCCCCGTTGGCCCGGTCATGACGCTA
AGTCAGAGGCGAGGGGCGGGTGTTTTTCCTGTTTTGGGGGGGTGTTGGGA
AATACCGTCCCTGGCGAAAATAGTGCGGAGTTTATCCGAGGTTTACTGTC
GTAGGCATACCGATCGCCCAGTGGTCTATGAGTTCGACGTTGTGCCTGAC
CTCGCAAAGATTCTATTCACCGTACAGAGTTTTGTATTGTTGAAAGGCAC
GAACTGCCGAAAGCGTATTAGTTTGCTAATACTAATATCATGGGTATGCA
CATTTCGACGCGAATCGACAAGGGAAAAAGTGCGGAATCCTCGAAAAATG
CAAGCGCGCGTTCCCGAAGTGGGGGGGGAGGGGCGAAGAGTATGCTTTGT
GACCCCGGGTTTCTGAGTTGACTACAACTAAGAGGATGGAGCGAGAATAA
TAGTTAGGTTAAAGAAACAAAATGGAATACAACAGAAATAAAACATGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig70874:2..699+

>mRNA_M-pyrifera_M_contig70874.16916.1 ID=mRNA_M-pyrifera_M_contig70874.16916.1|Name=mRNA_M-pyrifera_M_contig70874.16916.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=750bp|location=Sequence derived from alignment at M-pyrifera_M_contig70874:2..699+ (Macrocystis pyrifera P11B4 male)
ATGACGCTAAGTCAGAGGCGAGGGGCGGGTGTTTTTCCTGTTTTGGGGGG
GTGTTGGGAAATACCGTCCCTGGCGAAAATAGTGCGGAGTTTATCCGAGG
TTTACTGTCGTAGGCATACCGATCGCCCAGTGGTCTATGAGTTCGACGTT
GTGCCTGACCTCGCAAAGATTCTATTCACCGTACAGAGTTTTGTATTGTT
GAAAGGCACGAACTGCCGAAAGCGTATTAGTTTGCTAATACTAATATCAT
GGGTATGCACATTTCGACGCGAATCGACAAGGGAAAAAGTGCGGAATCCT
CGAAAAATGCAAGCGCGCGTTCCCGAAGTGGGGGGGGAGGGGCGAAGAGT
ATGCTTTGTGACCCCGGGTTTCTGAATGACGCTAAGTCAGAGGCGAGGGG
CGGGTGTTTTTCCTGTTTTGGGGGGGTGTTGGGAAATACCGTCCCTGGCG
AAAATAGTGCGGAGTTTATCCGAGGTTTACTGTCGTAGGCATACCGATCG
CCCAGTGGTCTATGAGTTCGACGTTGTGCCTGACCTCGCAAAGATTCTAT
TCACCGTACAGAGTTTTGTATTGTTGAAAGGCACGAACTGCCGAAAGCGT
ATTAGTTTGCTAATACTAATATCATGGGTATGCACATTTCGACGCGAATC
GACAAGGGAAAAAGTGCGGAATCCTCGAAAAATGCAAGCGCGCGTTCCCG
AAGTGGGGGGGGAGGGGCGAAGAGTATGCTTTGTGACCCCGGGTTTCTGA
back to top