mRNA_M-pyrifera_M_contig70845.16909.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70845.16909.1
Unique NamemRNA_M-pyrifera_M_contig70845.16909.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: UPI001FD1BB47 (L-rhamnose mutarotase n=1 Tax=Halobacillus sp. SSBR10-3 TaxID=2932257 RepID=UPI001FD1BB47)

HSP 1 Score: 75.1 bits (183), Expect = 2.580e-16
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   13 LFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            + RKA VMY+N+G+ EEYK+RHD+LWP++ AALKE GAHNYSIFL   T
Sbjct:    1 MIRKASVMYVNKGSYEEYKRRHDELWPEMNAALKEHGAHNYSIFLNEQT 49
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: A0A841ZTC2_9LIST (L-rhamnose mutarotase n=2 Tax=Listeria aquatica TaxID=1494960 RepID=A0A841ZTC2_9LIST)

HSP 1 Score: 73.2 bits (178), Expect = 1.480e-15
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   25 AFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            A +MYL EG +EEYKKRHD+LWP++E ALKE GA NYSIFL+P+T
Sbjct:    5 ASIMYLYEGQQEEYKKRHDELWPEMEQALKEHGASNYSIFLDPAT 49
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: A0A212LE21_9HYPH (L-rhamnose mutarotase n=4 Tax=Pleomorphomonas TaxID=261933 RepID=A0A212LE21_9HYPH)

HSP 1 Score: 72.8 bits (177), Expect = 2.100e-15
Identity = 31/49 (63.27%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   13 LFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            + RKAFVM++N  A  EYK+RHD++WP+L A LK  GAHNY+I+LEPST
Sbjct:    1 MIRKAFVMWVNPDAHAEYKRRHDEIWPELSAVLKAHGAHNYAIYLEPST 49
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: A0A537IKH4_9BACT (L-rhamnose mutarotase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A537IKH4_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.710e-14
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   19 RKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            R AF M LNEG EEEYKKRHD+LWPDLEA LKE G  +YSIFL+  T
Sbjct:    3 RVAFKMKLNEGFEEEYKKRHDELWPDLEALLKESGITDYSIFLDKET 49
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: A0A353GGA8_9BACT (L-rhamnose mutarotase n=1 Tax=Candidatus Sumerlaeota bacterium TaxID=2107588 RepID=A0A353GGA8_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 2.430e-14
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:   13 LFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPS 156
            + RKAFVM++N G E EY+KRH+ +W DL A LKE G+HNYSIFL+P+
Sbjct:    1 MIRKAFVMHVNSGCEAEYEKRHNPIWEDLAAVLKEHGSHNYSIFLDPT 48
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: A0A855SE12_PHOAN (L-rhamnose mutarotase n=1 Tax=Photobacterium angustum TaxID=661 RepID=A0A855SE12_PHOAN)

HSP 1 Score: 69.7 bits (169), Expect = 3.710e-14
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   10 SLFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            +L RKAFVM LN+  E EYKKRHD++WP+L   LK  G HNYSIFL  ST
Sbjct:    3 NLIRKAFVMQLNDNCEVEYKKRHDEIWPELVDVLKSHGGHNYSIFLHEST 52
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: UPI001865C4C4 (L-rhamnose mutarotase n=2 Tax=Vibrio litoralis TaxID=335972 RepID=UPI001865C4C4)

HSP 1 Score: 69.7 bits (169), Expect = 3.810e-14
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 VGRSLFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            + + L RKAFVM +N  +  EYKKRHD++WP+L   LK  G HNYSIFLEP+T
Sbjct:    1 MSKPLIRKAFVMQVNPDSHVEYKKRHDEIWPELVEVLKAHGGHNYSIFLEPNT 53
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: A0A1B1EGB1_VIBNA (L-rhamnose mutarotase n=8 Tax=Vibrionaceae TaxID=641 RepID=A0A1B1EGB1_VIBNA)

HSP 1 Score: 69.3 bits (168), Expect = 4.890e-14
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   13 LFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            + RKAFVM LNEG + EYKKRHD++WP+L   LK  G HNYSIFL   T
Sbjct:    1 MIRKAFVMQLNEGCKAEYKKRHDEIWPELVDVLKSHGGHNYSIFLHEDT 49
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: A0A1V0LLE3_9ENTR (L-rhamnose mutarotase n=5 Tax=Enterobacteriaceae TaxID=543 RepID=A0A1V0LLE3_9ENTR)

HSP 1 Score: 68.6 bits (166), Expect = 9.830e-14
Identity = 29/46 (63.04%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:   13 LFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLE 150
            + RKAFVM +N  A EEY++RH+ +WP+LEAALKEGGAH+Y+I+L+
Sbjct:    1 MIRKAFVMQVNPEAHEEYERRHNPIWPELEAALKEGGAHHYAIYLD 46
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BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Match: W7DDS8_9LIST (L-rhamnose 1-epimerase n=4 Tax=Listeria TaxID=1637 RepID=W7DDS8_9LIST)

HSP 1 Score: 68.6 bits (166), Expect = 9.830e-14
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   25 AFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLEPST 159
            A +MYL +G  EEYK RHDDLWP++E ALK  GAHNYSIFL+ +T
Sbjct:    5 ASIMYLKDGFAEEYKARHDDLWPEMEQALKAHGAHNYSIFLDDNT 49
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70845.16909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001FD1BB472.580e-1667.35L-rhamnose mutarotase n=1 Tax=Halobacillus sp. SSB... [more]
A0A841ZTC2_9LIST1.480e-1571.11L-rhamnose mutarotase n=2 Tax=Listeria aquatica Ta... [more]
A0A212LE21_9HYPH2.100e-1563.27L-rhamnose mutarotase n=4 Tax=Pleomorphomonas TaxI... [more]
A0A537IKH4_9BACT1.710e-1472.34L-rhamnose mutarotase n=1 Tax=Bacteroidetes bacter... [more]
A0A353GGA8_9BACT2.430e-1462.50L-rhamnose mutarotase n=1 Tax=Candidatus Sumerlaeo... [more]
A0A855SE12_PHOAN3.710e-1464.00L-rhamnose mutarotase n=1 Tax=Photobacterium angus... [more]
UPI001865C4C43.810e-1458.49L-rhamnose mutarotase n=2 Tax=Vibrio litoralis Tax... [more]
A0A1B1EGB1_VIBNA4.890e-1463.27L-rhamnose mutarotase n=8 Tax=Vibrionaceae TaxID=6... [more]
A0A1V0LLE3_9ENTR9.830e-1463.04L-rhamnose mutarotase n=5 Tax=Enterobacteriaceae T... [more]
W7DDS8_9LIST9.830e-1466.67L-rhamnose 1-epimerase n=4 Tax=Listeria TaxID=1637... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70845contigM-pyrifera_M_contig70845:4..162 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.8
Seed ortholog evalue5.5e-11
Seed eggNOG ortholog1116375.VEJY3_02920
Preferred namerhaM
KEGG rclassRC00563
KEGG koko:K03534
KEGG ReactionR10819
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005975,GO:0005996,GO:0008150,GO:0008152,GO:0009056,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019299,GO:0019301,GO:0019318,GO:0019320,GO:0044238,GO:0044281,GO:0044282,GO:0046365,GO:0071704,GO:1901575
EggNOG free text desc.Involved in the anomeric conversion of L-rhamnose
EggNOG OGs1RGYV@1224,1S6AI@1236,1XXQ9@135623,COG3254@1,COG3254@2
EC5.1.3.32
COG Functional cat.G
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.2785153-CDS-M-pyrifera_M_contig70845:3..1621622816602.2785153-CDS-M-pyrifera_M_contig70845:3..162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70845 4..162 -
1692278071.2847285-CDS-M-pyrifera_M_contig70845:3..1621692278071.2847285-CDS-M-pyrifera_M_contig70845:3..162Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70845 4..162 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70845.16909.1prot_M-pyrifera_M_contig70845.16909.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70845 4..162 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70845.16909.1

>prot_M-pyrifera_M_contig70845.16909.1 ID=prot_M-pyrifera_M_contig70845.16909.1|Name=mRNA_M-pyrifera_M_contig70845.16909.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
VGRSLFRKAFVMYLNEGAEEEYKKRHDDLWPDLEAALKEGGAHNYSIFLE
PST
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mRNA from alignment at M-pyrifera_M_contig70845:4..162-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70845.16909.1 ID=mRNA_M-pyrifera_M_contig70845.16909.1|Name=mRNA_M-pyrifera_M_contig70845.16909.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig70845:4..162- (Macrocystis pyrifera P11B4 male)
GTGGGAAGGAGTTTGTTTCGAAAGGCTTTTGTGATGTATTTGAACGAAGG
AGCGGAGGAAGAGTACAAGAAAAGGCATGATGACCTTTGGCCGGATTTAG
AGGCTGCATTGAAGGAAGGTGGTGCACACAATTACTCTATATTCTTGGAA
CCATCAACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70845:4..162-

>mRNA_M-pyrifera_M_contig70845.16909.1 ID=mRNA_M-pyrifera_M_contig70845.16909.1|Name=mRNA_M-pyrifera_M_contig70845.16909.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig70845:4..162- (Macrocystis pyrifera P11B4 male)
GTGGGAAGGAGTTTGTTTCGAAAGGCTTTTGTGATGTATTTGAACGAAGG
AGCGGAGGAAGAGTACAAGAAAAGGCATGATGACCTTTGGCCGGATTTAG
AGGCTGCATTGAAGGAAGGTGGTGCACACAATTACTCTATATTCTTGGAA
CCATCAACTGTGGGAAGGAGTTTGTTTCGAAAGGCTTTTGTGATGTATTT
GAACGAAGGAGCGGAGGAAGAGTACAAGAAAAGGCATGATGACCTTTGGC
CGGATTTAGAGGCTGCATTGAAGGAAGGTGGTGCACACAATTACTCTATA
TTCTTGGAACCATCAACT
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