mRNA_M-pyrifera_M_contig70831.16907.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70831.16907.1
Unique NamemRNA_M-pyrifera_M_contig70831.16907.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: D7G3X9_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X9_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 1.120e-41
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSLGAARASWGVFLAVAGWTAVSFVALAGFHTYLLWIGLGTFDWVVLQ 285
            LNTCIS RNYAHFYLLGVSGSLLYLYM+  A L  +  D+DDQ +AFGSL A+R +WG+F+AVAGW AVSFVALAGFHTYLL +GLGT+DWVV+Q
Sbjct:   99 LNTCISARNYAHFYLLGVSGSLLYLYMTVAATLTVIWADEDDQREAFGSLTASRITWGIFIAVAGWIAVSFVALAGFHTYLLLVGLGTYDWVVMQ 193          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: A0A5A8DYM4_CAFRO (Palmitoyltransferase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DYM4_CAFRO)

HSP 1 Score: 59.3 bits (142), Expect = 3.400e-8
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLV-MDKDDQEDAFGSLGAARASWGVFLAVAGWTAVSFVALAGFHTYLLWIGLGTFDWV 276
            LNTCI KRNYAHF+ L +  +L        ++L   V +++ +    +  L   +A   +  AVAG    S   L GFH YLLWIG+GT+DW+
Sbjct:  105 LNTCIGKRNYAHFFALSLCSTLQMAAQVVFSVLGMTVWIERGNDNVLYYVLVGLQA---LIAAVAGGATCS---LLGFHVYLLWIGMGTYDWM 191          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: A0A225X1Z1_9STRA (Palmitoyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1Z1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 7.010e-7
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAF-GSLGAARASWGVFLAVAGWTAVSFVALAGFHTYLLWIGLGTFDWVV 279
            LNTCI++ NY  FY L VS +   L  SA+ ++   + + + + +A  G   A  A   +  A       SFV LAGFHTYLL++G+GT+D+++
Sbjct:   93 LNTCIAESNYEAFYCLVVSATCQTLLQSALGIIMCTLWEAEVRANAVDGWETAVIALLWIHNAACLSLTNSFVLLAGFHTYLLYVGMGTYDFIL 186          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: A0A7S4ECK7_9STRA (Palmitoyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECK7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.910e-6
Identity = 31/96 (32.29%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSLGAARA-SWGVFLAVAGWTAVSFVALAGFHTYLLWIGLGTFDWVVLQ 285
            LN  + ++NY  FYLL ++G++ Y   +A+ +   +   +         +GA     +G+ LA A        AL GFHTYL ++G+GT+DW++ Q
Sbjct:  114 LNVSVGRQNYVPFYLLSMAGTVQYALHTAICVFIIVSCRRAIALGTLVVIGACGLLGFGILLAYA--------ALFGFHTYLAFLGIGTYDWIIDQ 201          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: A0A2P4Y4E9_9STRA (Palmitoyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y4E9_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.410e-6
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSLGAARASWGVFLAVAGWT--------AVSFVALAGFHTYLLWIGLGTFDWVV 279
            LNTCI++ NY  FY L VS +   L  + + +L   + + + Q +A          W   + V  W           SFV LAGFHTYLL +G+GT+D+++
Sbjct:   96 LNTCIAESNYEAFYCLVVSATCQTLLQTVLGILMCTLWESEVQTNATDG-------WETAVVVLLWIHNAACLSLTNSFVLLAGFHTYLLCVGMGTYDFIL 189          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: K3X7H4_GLOUD (Palmitoyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7H4_GLOUD)

HSP 1 Score: 52.0 bits (123), Expect = 4.710e-6
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSLGAARAS-WGVFLAVAGWT--------AVSFVALAGFHTYLLWIGLGTFDWVV 279
            LNTCI + NY  FY L VS ++  L  + + +L   +         F  + A  +S W   + V  W         A S+  LAGFHTYLLWIG GT+D+++
Sbjct:   38 LNTCIGENNYEAFYCLVVSATIQTLLQAVIGILMATLW--------FSQVKAQVSSDWHQPMLVLLWIHNAICLSLANSYFLLAGFHTYLLWIGSGTYDFIL 131          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: A0A2R5GQX8_9STRA (Palmitoyltransferase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQX8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.740e-6
Identity = 32/99 (32.32%), Postives = 53/99 (53.54%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSLGAARASWGVFLAVAGWTAV----SFVALAGFHTYLLWIGLGTFDWVVLQ 285
            L  C+  RNY  FYLL V G +   +   + L  +LV+D+  +E        ++ ++   L V    +V    S+++L  FHTYLL+IG GT+ +++ Q
Sbjct:  105 LGHCVGTRNYLQFYLLSVMGWVCAAWQCVIGL--YLVLDETSREQGIARAQGSKTTFAAILGVHFLCSVIILSSYISLWAFHTYLLYIGKGTYMYMIDQ 201          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: A0A662XL68_9STRA (Palmitoyltransferase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XL68_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.140e-5
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSLGAARASWGVFLAVAGWT--------AVSFVALAGFHTYLLWIGLGTFDWVV 279
            LNTCI++ NYA FY L VS ++  L  + V +L   +   + + +        R+ W   +    W         A SF  LAGFHTYLL +G GT+D+++
Sbjct:   58 LNTCIAESNYASFYCLVVSATVQTLLQAVVGILMCTLWYAEVEANV-------RSGWHKPVVALLWVHNVGCVSLANSFFLLAGFHTYLLCVGTGTYDFIL 151          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: A0A8J5J1W3_9STRA (Palmitoyltransferase n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J1W3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-5
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAF-GSLGAARASWGVFLAVAGWTAVSFVALAGFHTYLLWIGLGTFDWVV 279
            LNTCI++ NY  FY L VS +   L  + V +L   + + + + +A  G   A  A   +  A       SFV LAGFHTYLL +G+GT+D+++
Sbjct:   90 LNTCIAESNYEAFYWLVVSAACQTLLQTVVGILMCTLWESEVKANAADGWDKAVIALLWIHNAACISLTNSFVLLAGFHTYLLCVGVGTYDFIL 183          
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Match: D0P2Q3_PHYIT (Palmitoyltransferase n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0P2Q3_PHYIT)

HSP 1 Score: 51.6 bits (122), Expect = 1.590e-5
Identity = 35/95 (36.84%), Postives = 53/95 (55.79%), Query Frame = 1
Query:    1 LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSLGAARAS--WGVFLAVAGWTAVSFVALAGFHTYLLWIGLGTFDWVV 279
            LNTCI++ NY  FY L VS +   L  + + +L   +   + + +A      A  +  W    A    T+ SF+ LAGFHTYLL IG+GT+D+++
Sbjct:   91 LNTCIAESNYESFYCLVVSATCQTLLQTVIGILMCTLWQSEVKTNAAEGWDKALITLIWIHNAACMSLTS-SFLLLAGFHTYLLCIGMGTYDFIL 184          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70831.16907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G3X9_ECTSI1.120e-4174.74Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A5A8DYM4_CAFRO3.400e-839.78Palmitoyltransferase n=3 Tax=Cafeteria roenbergens... [more]
A0A225X1Z1_9STRA7.010e-738.30Palmitoyltransferase n=1 Tax=Phytophthora megakary... [more]
A0A7S4ECK7_9STRA2.910e-632.29Palmitoyltransferase n=1 Tax=Pelagomonas calceolat... [more]
A0A2P4Y4E9_9STRA3.410e-634.65Palmitoyltransferase n=1 Tax=Phytophthora palmivor... [more]
K3X7H4_GLOUD4.710e-636.27Palmitoyltransferase n=1 Tax=Globisporangium ultim... [more]
A0A2R5GQX8_9STRA6.740e-632.32Palmitoyltransferase n=1 Tax=Hondaea fermentalgian... [more]
A0A662XL68_9STRA1.140e-534.65Palmitoyltransferase n=2 Tax=Nothophytophthora sp.... [more]
A0A8J5J1W3_9STRA1.240e-538.30Palmitoyltransferase n=1 Tax=Phytophthora aleatori... [more]
D0P2Q3_PHYIT1.590e-536.84Palmitoyltransferase n=1 Tax=Phytophthora infestan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70831contigM-pyrifera_M_contig70831:286..570 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue7e-33
Seed eggNOG ortholog2880.D7G3X9
KEGG koko:K20027
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-19_000910.1
EC2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Exons1
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.1995037-CDS-M-pyrifera_M_contig70831:285..5701622816602.1995037-CDS-M-pyrifera_M_contig70831:285..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70831 286..570 +
1692278071.2539642-CDS-M-pyrifera_M_contig70831:285..5701692278071.2539642-CDS-M-pyrifera_M_contig70831:285..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70831 286..570 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70831.16907.1prot_M-pyrifera_M_contig70831.16907.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70831 286..570 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70831.16907.1

>prot_M-pyrifera_M_contig70831.16907.1 ID=prot_M-pyrifera_M_contig70831.16907.1|Name=mRNA_M-pyrifera_M_contig70831.16907.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=95bp
LNTCISKRNYAHFYLLGVSGSLLYLYMSAVALLAFLVMDKDDQEDAFGSL
GAARASWGVFLAVAGWTAVSFVALAGFHTYLLWIGLGTFDWVVLQ
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mRNA from alignment at M-pyrifera_M_contig70831:286..570+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70831.16907.1 ID=mRNA_M-pyrifera_M_contig70831.16907.1|Name=mRNA_M-pyrifera_M_contig70831.16907.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=285bp|location=Sequence derived from alignment at M-pyrifera_M_contig70831:286..570+ (Macrocystis pyrifera P11B4 male)
CTGAACACGTGCATCAGCAAGCGCAACTACGCTCACTTCTACCTGCTTGG TGTGTCGGGGTCTCTTCTGTACCTCTACATGTCGGCTGTGGCGCTGCTTG CCTTTTTGGTGATGGACAAGGACGATCAGGAGGACGCCTTCGGGTCGCTG GGGGCCGCTCGAGCGTCGTGGGGGGTCTTCCTTGCGGTGGCGGGATGGAC GGCGGTCAGTTTCGTGGCGCTGGCGGGCTTCCACACGTACCTGCTCTGGA TCGGCCTCGGGACGTTCGACTGGGTGGTCTTACAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70831:286..570+

>mRNA_M-pyrifera_M_contig70831.16907.1 ID=mRNA_M-pyrifera_M_contig70831.16907.1|Name=mRNA_M-pyrifera_M_contig70831.16907.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=570bp|location=Sequence derived from alignment at M-pyrifera_M_contig70831:286..570+ (Macrocystis pyrifera P11B4 male)
CTGAACACGTGCATCAGCAAGCGCAACTACGCTCACTTCTACCTGCTTGG
TGTGTCGGGGTCTCTTCTGTACCTCTACATGTCGGCTGTGGCGCTGCTTG
CCTTTTTGGTGATGGACAAGGACGATCAGGAGGACGCCTTCGGGTCGCTG
GGGGCCGCTCGAGCGTCGTGGGGGGTCTTCCTTGCGGTGGCGGGATGGAC
GGCGGTCAGTTTCGTGGCGCTGGCGGGCTTCCACACGTACCTGCTCTGGA
TCGGCCTCGGGACGTTCGACTGGGTGGTCTTACAGCTGAACACGTGCATC
AGCAAGCGCAACTACGCTCACTTCTACCTGCTTGGTGTGTCGGGGTCTCT
TCTGTACCTCTACATGTCGGCTGTGGCGCTGCTTGCCTTTTTGGTGATGG
ACAAGGACGATCAGGAGGACGCCTTCGGGTCGCTGGGGGCCGCTCGAGCG
TCGTGGGGGGTCTTCCTTGCGGTGGCGGGATGGACGGCGGTCAGTTTCGT
GGCGCTGGCGGGCTTCCACACGTACCTGCTCTGGATCGGCCTCGGGACGT
TCGACTGGGTGGTCTTACAG
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