mRNA_M-pyrifera_M_contig70806.16903.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig70806.16903.1
Unique NamemRNA_M-pyrifera_M_contig70806.16903.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Match: UPI00118C6435 (hypothetical protein n=1 Tax=Gimesia chilikensis TaxID=2605989 RepID=UPI00118C6435)

HSP 1 Score: 298 bits (764), Expect = 6.850e-101
Identity = 140/145 (96.55%), Postives = 141/145 (97.24%), Query Frame = 1
Query:    1 MKIKNTARAGMTGLLVLGISCLVISDRLEAGHKCGHCKMGGLSMFHKGACCSPWRPGFKHKCGHKXXXGSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG 435
            MKIKNTARAGMTGL VLGISCLVISDRLEAGHKCGHCKMGGLSMFHKGACCSPWRPGF+HKCGHK   GSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG
Sbjct:    1 MKIKNTARAGMTGLFVLGISCLVISDRLEAGHKCGHCKMGGLSMFHKGACCSPWRPGFQHKCGHKHKCGSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG 145          
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Match: A0A2E7K4M3_9PLAN (Uncharacterized protein n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7K4M3_9PLAN)

HSP 1 Score: 297 bits (761), Expect = 1.960e-100
Identity = 139/145 (95.86%), Postives = 141/145 (97.24%), Query Frame = 1
Query:    1 MKIKNTARAGMTGLLVLGISCLVISDRLEAGHKCGHCKMGGLSMFHKGACCSPWRPGFKHKCGHKXXXGSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG 435
            MKIKNTARAG+TGLLVLGISCLVISDRLEAGHKCGHCKMGGLSMFHKG CCSPWRPGF+HKCGHK   GSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG
Sbjct:    1 MKIKNTARAGLTGLLVLGISCLVISDRLEAGHKCGHCKMGGLSMFHKGTCCSPWRPGFQHKCGHKHKCGSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG 145          
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Match: A0A517X5E0_9PLAN (Uncharacterized protein n=7 Tax=Planctomycetaceae TaxID=126 RepID=A0A517X5E0_9PLAN)

HSP 1 Score: 176 bits (445), Expect = 1.700e-52
Identity = 95/148 (64.19%), Postives = 105/148 (70.95%), Query Frame = 1
Query:   10 KNTARAGMTGLLVLGISCLVISDRLEAGHKCGH--CKMGGLSMFHKGACCSPWRPGFKHKCGHKXXXGSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPA----VRPTILHYPG 435
            K TARA +TG+ VLG+SCL I  +LEAGHKCGH  CK GGLS+FH G CCSPW+ G KHKC       SGCG SSCG G S VD YYQG VYGMGN S+GGC+SCQSG  VA   GMPAGG + PQ GL P P     +RP ILHYPG
Sbjct:    4 KFTARAVLTGIFVLGMSCLAIPGQLEAGHKCGHGHCKGGGLSLFHSGKCCSPWKLGHKHKCN------SGCGGSSCG-GGSLVDHYYQGAVYGMGNSSRGGCQSCQSGSGVADFDGMPAGG-VSPQLGLQPMPMQAAPMRPRILHYPG 143          
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Match: A0A2E2C1Z0_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C1Z0_9PLAN)

HSP 1 Score: 169 bits (429), Expect = 4.430e-50
Identity = 91/151 (60.26%), Postives = 105/151 (69.54%), Query Frame = 1
Query:    1 MKIKNTARAGMTGLLVLGISCLVISDRLEAGHKCGH--CKMGGLSMFHKGACCSPWRPGFKHKCGHKXXXGSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGL----IPAPAVRPTILHYPG 435
            MK K TARAG+TG+L+L + CL I  +LEAGHKCGH  CK GGLS+FH G CCSPW+ G KHKC        GCG  SCG G S VDQYYQG VYGMGN S+GGC+SCQSG  +A   G+PAG  L PQ  L    + +P +RP ILHYPG
Sbjct:    1 MKKKLTARAGLTGILILSLICLAIPGQLEAGHKCGHGHCKGGGLSLFHSGKCCSPWKLGHKHKCK------PGCGGGSCGSG-SLVDQYYQGAVYGMGNSSRGGCQSCQSGSDIADFDGLPAGD-LSPQPDLQMMPVQSPPMRPRILHYPG 143          
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Match: A0A518I6F3_9PLAN (Uncharacterized protein n=2 Tax=Gimesia TaxID=1649453 RepID=A0A518I6F3_9PLAN)

HSP 1 Score: 164 bits (415), Expect = 5.430e-48
Identity = 91/152 (59.87%), Postives = 104/152 (68.42%), Query Frame = 1
Query:    1 MKIKNTARAGMTGLLVLGISCLVISDRLEAGH-KCG--HCKMGGLSMFHKGACCSPWRPGFKHKCGHKXXXGSGCGMSSCGCGD-SFVDQYYQGVVYGMGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIP---APAVRPTILHYPG 435
            M IK TA+AG+TGLLVLG+  L   +++EAGH KCG  HC  GGLS+FH G CCSPW+ G KHKC       +GCG SSCGCG  S  D YYQG VYG+GN  + GC+SCQSGG VAG  GMPAG G  P   + P   AP  RPTILHYPG
Sbjct:    2 MNIK-TAKAGLTGLLVLGLVWLASPNQVEAGHHKCGKGHCGRGGLSLFHSGKCCSPWKLGHKHKCR------TGCGESSCGCGSGSIADHYYQGAVYGLGNSPRVGCQSCQSGGGVAGFNGMPAGEGASPPLAMQPMPMAPPRRPTILHYPG 146          
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Match: A0A517WTF5_9PLAN (Uncharacterized protein n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517WTF5_9PLAN)

HSP 1 Score: 136 bits (343), Expect = 3.530e-37
Identity = 80/151 (52.98%), Postives = 101/151 (66.89%), Query Frame = 1
Query:    1 MKIKNTARAGMTGLLVLGISCLVISDRLEAGHKC--GHCKMGGLSMFHKGACCSPWRPGFKHKCGHKXXXGSGCGMSSCGCGDSFVDQYYQGVVYG-MGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPP---QAGLIPAPAVRPTILHYPG 435
            +KIK TA+AG+TGLLVLG++ + ++  LEAGHKC  GHCK  G+ +F  G CCSPW+ G KHK  HK    SGC  S  G G +  D YYQG +YG MG  S+  C+SCQ+G  +AG YGMPAGG +PP   + G+     + PTILHYPG
Sbjct:    2 IKIK-TAKAGLTGLLVLGMAWMSMASPLEAGHKCNSGHCKHRGMKLFGSGKCCSPWKLGHKHK--HKCK--SGCLDSVYGVG-AIADYYYQGAIYGGMGYNSRSSCQSCQAGSGIAGPYGMPAGGVVPPPLARRGI----QIHPTILHYPG 142          
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Match: UPI0011A76EAE (hypothetical protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=UPI0011A76EAE)

HSP 1 Score: 95.5 bits (236), Expect = 4.280e-22
Identity = 44/51 (86.27%), Postives = 48/51 (94.12%), Query Frame = 1
Query:  283 MGNVSQGGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG 435
            MGN+S+GGC+SCQSGGAVAG YGMPAGGG  PQAGLIPAPA+RPTILHYPG
Sbjct:    1 MGNISRGGCKSCQSGGAVAGPYGMPAGGGFAPQAGLIPAPAIRPTILHYPG 51          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig70806.16903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI00118C64356.850e-10196.55hypothetical protein n=1 Tax=Gimesia chilikensis T... [more]
A0A2E7K4M3_9PLAN1.960e-10095.86Uncharacterized protein n=8 Tax=Gimesia TaxID=1649... [more]
A0A517X5E0_9PLAN1.700e-5264.19Uncharacterized protein n=7 Tax=Planctomycetaceae ... [more]
A0A2E2C1Z0_9PLAN4.430e-5060.26Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A518I6F3_9PLAN5.430e-4859.87Uncharacterized protein n=2 Tax=Gimesia TaxID=1649... [more]
A0A517WTF5_9PLAN3.530e-3752.98Uncharacterized protein n=2 Tax=Gimesia aquarii Ta... [more]
UPI0011A76EAE4.280e-2286.27hypothetical protein n=1 Tax=Gimesia panareensis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig70806contigM-pyrifera_M_contig70806:735..1169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size435
Cds size435
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.92959-CDS-M-pyrifera_M_contig70806:734..11691622816601.92959-CDS-M-pyrifera_M_contig70806:734..1169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70806 735..1169 +
1692278071.0978894-CDS-M-pyrifera_M_contig70806:734..11691692278071.0978894-CDS-M-pyrifera_M_contig70806:734..1169Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig70806 735..1169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig70806.16903.1prot_M-pyrifera_M_contig70806.16903.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig70806 735..1169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig70806.16903.1

>prot_M-pyrifera_M_contig70806.16903.1 ID=prot_M-pyrifera_M_contig70806.16903.1|Name=mRNA_M-pyrifera_M_contig70806.16903.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=145bp
MKIKNTARAGMTGLLVLGISCLVISDRLEAGHKCGHCKMGGLSMFHKGAC
CSPWRPGFKHKCGHKHKCGSGCGMSSCGCGDSFVDQYYQGVVYGMGNVSQ
GGCRSCQSGGAVAGAYGMPAGGGLPPQAGLIPAPAVRPTILHYPG
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mRNA from alignment at M-pyrifera_M_contig70806:735..1169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig70806.16903.1 ID=mRNA_M-pyrifera_M_contig70806.16903.1|Name=mRNA_M-pyrifera_M_contig70806.16903.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig70806:735..1169+ (Macrocystis pyrifera P11B4 male)
ATGAAAATTAAAAATACTGCCAGGGCAGGTATGACCGGACTGCTTGTGCT GGGAATTTCCTGCCTGGTGATCTCAGACCGACTTGAAGCCGGTCACAAAT GTGGTCACTGCAAGATGGGCGGTCTGTCGATGTTCCATAAAGGAGCGTGC TGCAGTCCGTGGCGTCCGGGCTTCAAACATAAATGCGGTCATAAGCACAA ATGTGGTTCCGGTTGCGGGATGAGTTCCTGCGGCTGCGGAGACTCGTTCG TTGATCAATATTATCAGGGAGTCGTTTATGGTATGGGAAACGTTTCGCAG GGTGGCTGCCGGTCATGCCAGTCTGGAGGTGCTGTGGCTGGTGCTTATGG GATGCCAGCCGGTGGTGGTCTCCCGCCGCAAGCGGGGTTAATTCCCGCTC CGGCAGTGCGACCAACGATTCTGCATTATCCGGGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig70806:735..1169+

>mRNA_M-pyrifera_M_contig70806.16903.1 ID=mRNA_M-pyrifera_M_contig70806.16903.1|Name=mRNA_M-pyrifera_M_contig70806.16903.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=870bp|location=Sequence derived from alignment at M-pyrifera_M_contig70806:735..1169+ (Macrocystis pyrifera P11B4 male)
ATGAAAATTAAAAATACTGCCAGGGCAGGTATGACCGGACTGCTTGTGCT
GGGAATTTCCTGCCTGGTGATCTCAGACCGACTTGAAGCCGGTCACAAAT
GTGGTCACTGCAAGATGGGCGGTCTGTCGATGTTCCATAAAGGAGCGTGC
TGCAGTCCGTGGCGTCCGGGCTTCAAACATAAATGCGGTCATAAGCACAA
ATGTGGTTCCGGTTGCGGGATGAGTTCCTGCGGCTGCGGAGACTCGTTCG
TTGATCAATATTATCAGGGAGTCGTTTATGGTATGGGAAACGTTTCGCAG
GGTGGCTGCCGGTCATGCCAGTCTGGAGGTGCTGTGGCTGGTGCTTATGG
GATGCCAGCCGGTGGTGGTCTCCCGCCGCAAGCGGGGTTAATTCCCGCTC
CGGCAGTGCGACCAACGATTCTGCATTATCCGGGAATGAAAATTAAAAAT
ACTGCCAGGGCAGGTATGACCGGACTGCTTGTGCTGGGAATTTCCTGCCT
GGTGATCTCAGACCGACTTGAAGCCGGTCACAAATGTGGTCACTGCAAGA
TGGGCGGTCTGTCGATGTTCCATAAAGGAGCGTGCTGCAGTCCGTGGCGT
CCGGGCTTCAAACATAAATGCGGTCATAAGCACAAATGTGGTTCCGGTTG
CGGGATGAGTTCCTGCGGCTGCGGAGACTCGTTCGTTGATCAATATTATC
AGGGAGTCGTTTATGGTATGGGAAACGTTTCGCAGGGTGGCTGCCGGTCA
TGCCAGTCTGGAGGTGCTGTGGCTGGTGCTTATGGGATGCCAGCCGGTGG
TGGTCTCCCGCCGCAAGCGGGGTTAATTCCCGCTCCGGCAGTGCGACCAA
CGATTCTGCATTATCCGGGA
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